Wall clock time and date at job start Tue Mar 31 2020 16:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47389 * 2 1 4 4 C 1.52993 * 109.47248 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.36828 * 119.99916 * 89.99992 * 5 4 3 7 7 H 1.07991 * 120.00225 * 313.74052 * 6 5 4 8 8 C 1.38916 * 119.99783 * 133.47017 * 6 5 4 9 9 N 1.31491 * 119.99852 * 164.30135 * 8 6 5 10 10 Si 1.86799 * 119.99891 * 344.29906 * 8 6 5 11 11 H 1.48497 * 109.47057 * 95.65332 * 10 8 6 12 12 H 1.48507 * 109.46775 * 215.65213 * 10 8 6 13 13 H 1.48499 * 109.47460 * 335.64902 * 10 8 6 14 14 C 1.38398 * 120.00066 * 269.99928 * 5 4 3 15 15 C 1.40316 * 119.22721 * 167.29916 * 14 5 4 16 16 C 1.36174 * 119.83853 * 179.97438 * 15 14 5 17 17 C 1.41192 * 118.29956 * 359.97438 * 16 15 14 18 18 C 1.39956 * 121.09476 * 179.97438 * 17 16 15 19 19 C 1.38793 * 119.43274 * 180.02562 * 18 17 16 20 20 C 1.47527 * 119.81573 * 179.97438 * 19 18 17 21 21 O 1.21493 * 120.00428 * 0.03518 * 20 19 18 22 22 O 1.34755 * 119.99932 * 180.02562 * 20 19 18 23 23 C 1.45200 * 117.00167 * 179.97438 * 22 20 19 24 24 C 1.40668 * 120.36322 * 0.02562 * 19 18 17 25 25 C 1.35694 * 120.87506 * 359.97438 * 24 19 18 26 26 C 1.40810 * 120.12833 * 0.02562 * 25 24 19 27 27 N 1.31902 * 119.22203 * 347.01944 * 14 5 4 28 28 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47681 * 300.00117 * 1 2 3 30 30 H 1.09011 * 109.46815 * 60.00651 * 1 2 3 31 31 H 1.09000 * 109.47501 * 239.99561 * 2 1 3 32 32 H 1.09004 * 109.47074 * 119.99964 * 2 1 3 33 33 H 1.09006 * 109.46785 * 59.99522 * 3 2 1 34 34 H 1.08997 * 109.46694 * 299.99395 * 3 2 1 35 35 H 1.09000 * 109.47287 * 59.99779 * 4 3 2 36 36 H 1.09004 * 109.47429 * 300.00095 * 4 3 2 37 37 H 0.96999 * 120.00238 * 179.97438 * 9 8 6 38 38 H 1.08001 * 120.07840 * 359.94917 * 15 14 5 39 39 H 1.08001 * 120.85555 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.28511 * 0.02562 * 18 17 16 41 41 H 1.09002 * 109.47148 * 299.99830 * 23 22 20 42 42 H 1.08998 * 109.46995 * 59.99768 * 23 22 20 43 43 H 1.08997 * 109.47113 * 179.97438 * 23 22 20 44 44 H 1.07997 * 119.56390 * 179.97438 * 24 19 18 45 45 H 1.07998 * 119.93731 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8236 0.0013 6 6 4.2859 3.4683 1.1865 7 1 3.5518 3.4199 1.9771 8 6 5.4637 4.1804 1.3749 9 7 5.5597 5.0426 2.3630 10 14 6.9109 3.9129 0.2245 11 1 6.8911 4.9441 -0.8439 12 1 8.1785 4.0185 0.9910 13 1 6.8138 2.5636 -0.3879 14 6 4.2895 3.4764 -1.1970 15 6 4.4947 4.8645 -1.1925 16 6 4.7238 5.5193 -2.3643 17 6 4.7473 4.7662 -3.5584 18 6 4.9770 5.3795 -4.7953 19 6 4.9922 4.6061 -5.9477 20 6 5.2330 5.2438 -7.2560 21 8 5.4179 6.4427 -7.3226 22 8 5.2481 4.4965 -8.3773 23 6 5.4904 5.1910 -9.6292 24 6 4.7783 3.2177 -5.8751 25 6 4.5543 2.6090 -4.6832 26 6 4.5327 3.3660 -3.4960 27 7 4.3173 2.7782 -2.3157 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9287 0.8909 37 1 6.3822 5.5396 2.4948 38 1 4.4707 5.4122 -0.2620 39 1 4.8834 6.5873 -2.3800 40 1 5.1410 6.4454 -4.8527 41 1 4.7131 5.9389 -9.7861 42 1 6.4634 5.6808 -9.5905 43 1 5.4770 4.4746 -10.4506 44 1 4.7925 2.6283 -6.7799 45 1 4.3914 1.5421 -4.6450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:12 Heat of formation + Delta-G solvation = -40.668194 kcal Electronic energy + Delta-G solvation = -27584.878350 eV Core-core repulsion = 23759.854552 eV Total energy + Delta-G solvation = -3825.023798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.89782 -41.20736 -39.31991 -37.50180 -36.90271 -35.72956 -34.52254 -33.91754 -31.46071 -31.02054 -29.85230 -28.52957 -26.77447 -25.50443 -24.44778 -23.62039 -22.68096 -22.14059 -21.88366 -20.30503 -19.27243 -18.54474 -18.03872 -17.37725 -17.31913 -17.23337 -16.64148 -16.27139 -15.81878 -15.49812 -15.27470 -15.10971 -14.94594 -14.68195 -14.54611 -14.32004 -14.19226 -14.08362 -13.68598 -13.54159 -13.33285 -13.16427 -13.01128 -12.74896 -12.57473 -12.39088 -12.24990 -12.04643 -12.02900 -11.88636 -11.77038 -11.60589 -11.42831 -11.35815 -11.04416 -10.40288 -10.18730 -9.32106 -8.73840 -8.54473 -6.23558 -0.62439 -0.10212 0.97174 1.14432 1.24190 1.32788 1.39826 1.75515 2.06239 2.21089 2.41568 2.78394 3.29736 3.59940 3.78320 3.79163 3.97865 4.00579 4.08381 4.14044 4.19422 4.29901 4.34780 4.37369 4.37705 4.48434 4.54003 4.72990 4.74222 4.83132 4.87685 4.89794 4.96575 5.00583 5.06644 5.14550 5.21373 5.25721 5.30890 5.37674 5.38114 5.44414 5.50288 5.52076 5.67470 5.79770 5.94397 6.52775 6.73174 6.92177 7.01610 7.58482 8.43221 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.003821 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.360958 B = 7325.729430 C = 9066.294791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.112 3.888 5 N -0.442 5.442 6 C -0.324 4.324 7 H 0.088 0.912 8 C 0.055 3.945 9 N -0.882 5.882 10 Si 0.900 3.100 11 H -0.251 1.251 12 H -0.282 1.282 13 H -0.276 1.276 14 C 0.394 3.606 15 C -0.220 4.220 16 C -0.032 4.032 17 C -0.206 4.206 18 C 0.017 3.983 19 C -0.194 4.194 20 C 0.520 3.480 21 O -0.546 6.546 22 O -0.355 6.355 23 C 0.029 3.971 24 C -0.027 4.027 25 C -0.145 4.145 26 C 0.207 3.793 27 N -0.597 5.597 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.284 0.716 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.164 0.836 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -5.096 -15.803 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.154 4.154 4 C -0.010 4.010 5 N -0.135 5.135 6 C -0.453 4.453 7 H 0.105 0.895 8 C -0.153 4.153 9 N -0.516 5.516 10 Si 0.725 3.275 11 H -0.175 1.175 12 H -0.208 1.208 13 H -0.201 1.201 14 C 0.146 3.854 15 C -0.243 4.243 16 C -0.056 4.056 17 C -0.211 4.211 18 C -0.002 4.002 19 C -0.197 4.197 20 C 0.368 3.632 21 O -0.438 6.438 22 O -0.272 6.272 23 C -0.064 4.064 24 C -0.047 4.047 25 C -0.165 4.165 26 C 0.078 3.922 27 N -0.323 5.323 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.150 0.850 39 H 0.175 0.825 40 H 0.160 0.840 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.154 0.846 44 H 0.181 0.819 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.065 -5.606 -15.403 16.676 hybrid contribution 1.058 1.407 0.182 1.770 sum -2.007 -4.199 -15.221 15.917 Atomic orbital electron populations 1.21730 0.94917 1.02264 1.01518 1.21415 0.96581 0.94671 1.02549 1.21783 0.94617 0.98261 1.00735 1.21741 0.94718 0.82283 1.02269 1.42726 1.58231 1.11333 1.01186 1.18894 1.03478 1.31214 0.91719 0.89484 1.25900 0.98726 0.94366 0.96298 1.69774 1.28907 1.21910 1.31056 0.86480 0.80628 0.80152 0.80214 1.17508 1.20792 1.20123 1.19064 0.90871 0.88464 0.86960 1.21553 1.07792 0.94564 1.00358 1.21489 0.92979 1.00724 0.90450 1.18587 1.13179 0.95008 0.94354 1.21333 0.89433 0.99905 0.89563 1.18823 1.16119 0.95140 0.89622 1.21134 0.72191 0.84614 0.85228 1.90791 1.48245 1.16933 1.87865 1.86537 1.82409 1.41811 1.16394 1.23579 1.01758 0.99285 0.81767 1.21043 0.92763 0.92362 0.98506 1.20649 1.05694 1.00770 0.89424 1.19187 0.90689 0.90157 0.92153 1.67641 1.30079 1.37620 0.96946 0.91119 0.93078 0.93208 0.91366 0.91279 0.93244 0.93678 0.90360 0.90928 0.90521 0.85009 0.82509 0.83978 0.91948 0.92068 0.84625 0.81872 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.11 -2.87 5.93 30.59 0.18 -2.69 16 3 C -0.12 -3.82 5.54 30.59 0.17 -3.65 16 4 C 0.11 4.32 5.49 86.38 0.47 4.79 16 5 N -0.44 -20.25 2.17 -517.74 -1.12 -21.37 16 6 C -0.32 -16.42 9.15 84.08 0.77 -15.66 16 7 H 0.09 4.70 8.06 -2.92 -0.02 4.68 16 8 C 0.05 2.81 3.93 84.91 0.33 3.14 16 9 N -0.88 -47.13 13.96 21.66 0.30 -46.82 16 10 Si 0.90 42.59 24.59 68.60 1.69 44.27 16 11 H -0.25 -11.55 6.03 99.48 0.60 -10.95 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 14 C 0.39 17.86 5.25 133.71 0.70 18.56 16 15 C -0.22 -9.70 5.93 22.29 0.13 -9.56 16 16 C -0.03 -1.22 9.54 22.51 0.21 -1.01 16 17 C -0.21 -7.60 5.74 -21.26 -0.12 -7.72 16 18 C 0.02 0.53 9.34 22.82 0.21 0.75 16 19 C -0.19 -5.69 5.87 -20.10 -0.12 -5.80 16 20 C 0.52 14.65 7.89 70.27 0.55 15.21 16 21 O -0.55 -17.82 16.10 19.86 0.32 -17.50 16 22 O -0.36 -7.96 9.78 -56.65 -0.55 -8.51 16 23 C 0.03 0.44 10.57 113.37 1.20 1.64 16 24 C -0.03 -0.70 9.51 22.27 0.21 -0.49 16 25 C -0.15 -4.44 9.94 22.31 0.22 -4.22 16 26 C 0.21 7.93 6.61 40.38 0.27 8.20 16 27 N -0.60 -25.53 8.99 -186.02 -1.67 -27.20 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 2.98 7.20 -2.39 -0.02 2.96 16 36 H 0.07 2.70 8.04 -2.39 -0.02 2.68 16 37 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.13 6.28 5.82 -2.91 -0.02 6.26 16 39 H 0.16 4.90 8.06 -2.91 -0.02 4.87 16 40 H 0.14 4.19 7.62 -2.91 -0.02 4.16 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.16 3.19 7.57 -2.91 -0.02 3.17 16 45 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -61.40 372.09 5.96 -55.44 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.88 Total: 22.68 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 6.12 Total: -1.00 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -2.49 Total: -95.39 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.23 Total: -26.01 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.69 Total: 44.27 kcal Total: -61.40 5.96 -55.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.774 kcal (2) G-P(sol) polarization free energy of solvation -61.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds