Wall clock time and date at job start Tue Mar 31 2020 16:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47050 * 2 1 4 4 C 1.53001 * 109.47050 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47093 * 179.97438 * 4 3 2 6 6 C 1.36843 * 119.99675 * 269.99914 * 5 4 3 7 7 H 1.08001 * 119.99508 * 141.46699 * 6 5 4 8 8 C 1.38833 * 120.00412 * 321.46319 * 6 5 4 9 9 N 1.31552 * 119.99731 * 156.93778 * 8 6 5 10 10 Si 1.86797 * 120.00208 * 336.93324 * 8 6 5 11 11 H 1.48502 * 109.47026 * 95.54944 * 10 8 6 12 12 H 1.48498 * 109.47567 * 215.55259 * 10 8 6 13 13 H 1.48503 * 109.46793 * 335.55615 * 10 8 6 14 14 C 1.38700 * 119.99852 * 90.00343 * 5 4 3 15 15 C 1.38341 * 119.24057 * 170.46968 * 14 5 4 16 16 C 1.40248 * 118.59519 * 179.97438 * 15 14 5 17 17 C 1.40576 * 121.85673 * 180.02562 * 16 15 14 18 18 C 1.35764 * 119.84887 * 179.97438 * 17 16 15 19 19 C 1.40768 * 120.85315 * 359.97438 * 18 17 16 20 20 C 1.47536 * 119.69356 * 180.02562 * 19 18 17 21 21 O 1.21497 * 120.00065 * 179.97438 * 20 19 18 22 22 O 1.34746 * 120.00075 * 0.02562 * 20 19 18 23 23 C 1.45199 * 117.00541 * 179.97438 * 22 20 19 24 24 C 1.38732 * 120.61419 * 0.04562 * 19 18 17 25 25 C 1.40016 * 119.35396 * 359.95575 * 24 19 18 26 26 C 1.40579 * 121.74123 * 180.02562 * 25 24 19 27 27 N 1.31130 * 120.17921 * 179.97438 * 26 25 24 28 28 H 1.09001 * 109.46986 * 299.99995 * 1 2 3 29 29 H 1.09002 * 109.47242 * 59.99724 * 1 2 3 30 30 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47007 * 240.00559 * 2 1 3 32 32 H 1.08994 * 109.47435 * 120.00038 * 2 1 3 33 33 H 1.09001 * 109.47222 * 60.00150 * 3 2 1 34 34 H 1.09002 * 109.47323 * 300.00225 * 3 2 1 35 35 H 1.09002 * 109.47007 * 60.00559 * 4 3 2 36 36 H 1.08994 * 109.47435 * 300.00038 * 4 3 2 37 37 H 0.96996 * 119.99510 * 179.97438 * 9 8 6 38 38 H 1.07997 * 120.70790 * 0.02562 * 15 14 5 39 39 H 1.07995 * 120.07752 * 359.95162 * 17 16 15 40 40 H 1.08000 * 119.57370 * 179.97438 * 18 17 16 41 41 H 1.08996 * 109.47246 * 179.97438 * 23 22 20 42 42 H 1.09002 * 109.46309 * 300.00257 * 23 22 20 43 43 H 1.08994 * 109.46758 * 59.98968 * 23 22 20 44 44 H 1.08000 * 120.31787 * 179.97438 * 24 19 18 45 45 H 1.08000 * 119.90906 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2869 3.4681 -1.1854 7 1 4.0388 4.5142 -1.2879 8 6 4.8378 2.7771 -2.2562 9 7 4.6514 3.2102 -3.4843 10 14 5.8437 1.2326 -1.9530 11 1 4.9740 0.0382 -2.1027 12 1 6.9534 1.1633 -2.9374 13 1 6.4032 1.2683 -0.5779 14 6 4.2891 3.4783 1.2009 15 6 4.9338 4.7022 1.1905 16 6 5.1596 5.3524 2.4125 17 6 5.8076 6.5980 2.4815 18 6 6.0045 7.1913 3.6867 19 6 5.5671 6.5756 4.8746 20 6 5.7940 7.2435 6.1704 21 8 5.4184 6.7173 7.1991 22 8 6.4168 8.4376 6.2129 23 6 6.6055 9.0365 7.5221 24 6 4.9251 5.3463 4.8382 25 6 4.7130 4.7190 3.6045 26 6 4.0676 3.4737 3.5093 27 7 3.8846 2.9140 2.3377 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8892 36 1 3.9330 0.9288 0.8908 37 1 5.0366 2.7276 -4.2323 38 1 5.2557 5.1481 0.2610 39 1 6.1482 7.0817 1.5781 40 1 6.5032 8.1481 3.7346 41 1 7.1182 9.9923 7.4140 42 1 5.6350 9.1954 7.9921 43 1 7.2052 8.3710 8.1430 44 1 4.5919 4.8780 5.7525 45 1 3.7216 2.9767 4.4036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:10 Heat of formation + Delta-G solvation = -28.495909 kcal Electronic energy + Delta-G solvation = -27154.741021 eV Core-core repulsion = 23330.245052 eV Total energy + Delta-G solvation = -3824.495968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.46372 -39.79981 -37.82559 -36.34825 -35.82808 -34.33972 -32.54473 -32.07708 -30.65100 -29.47045 -28.11641 -27.47641 -25.36877 -23.85871 -23.50092 -22.08931 -21.68676 -20.83565 -20.60189 -18.36508 -17.57106 -17.04438 -16.82076 -16.22929 -16.19186 -15.40383 -15.23368 -14.89170 -14.47475 -14.21612 -14.13797 -13.55648 -13.53065 -13.28232 -13.16159 -13.12315 -12.97508 -12.66155 -12.49824 -12.12427 -12.09764 -11.90986 -11.51681 -11.44178 -11.24083 -10.86486 -10.80340 -10.77822 -10.69124 -10.58494 -10.32785 -10.28156 -10.01313 -9.68381 -9.27488 -8.84252 -8.82917 -8.21279 -6.84236 -6.73864 -4.19746 0.75269 1.36454 2.35721 2.81645 2.84585 2.87762 3.04300 3.10713 3.71966 3.83138 4.02151 4.51608 4.82860 4.96215 4.97642 5.03743 5.10537 5.19031 5.24968 5.27089 5.32491 5.42346 5.43225 5.54292 5.64910 5.66097 5.72466 6.00068 6.03366 6.09078 6.12290 6.15326 6.23984 6.25422 6.36326 6.40464 6.46211 6.50710 6.66114 6.67464 6.69627 6.81085 6.95185 7.23538 7.30699 7.33826 7.82428 7.93056 8.15197 8.48408 8.82330 9.22867 10.23782 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.003030 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.858692 B = 9238.244972 C =10438.987135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.124 4.124 4 C 0.105 3.895 5 N -0.421 5.421 6 C -0.312 4.312 7 H 0.110 0.890 8 C 0.066 3.934 9 N -0.837 5.837 10 Si 0.881 3.119 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.258 1.258 14 C 0.363 3.637 15 C -0.267 4.267 16 C 0.057 3.943 17 C -0.151 4.151 18 C -0.051 4.051 19 C -0.204 4.204 20 C 0.514 3.486 21 O -0.527 6.527 22 O -0.358 6.358 23 C 0.038 3.962 24 C 0.033 3.967 25 C -0.215 4.215 26 C 0.200 3.800 27 N -0.536 5.536 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.282 0.718 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.132 0.868 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 2.304 11.279 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.018 4.018 5 N -0.107 5.107 6 C -0.439 4.439 7 H 0.128 0.872 8 C -0.144 4.144 9 N -0.467 5.467 10 Si 0.707 3.293 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.182 1.182 14 C 0.131 3.869 15 C -0.295 4.295 16 C 0.052 3.948 17 C -0.170 4.170 18 C -0.070 4.070 19 C -0.207 4.207 20 C 0.363 3.637 21 O -0.418 6.418 22 O -0.275 6.275 23 C -0.056 4.056 24 C 0.011 3.989 25 C -0.221 4.221 26 C 0.021 3.979 27 N -0.249 5.249 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.150 0.850 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.442 1.153 10.720 10.791 hybrid contribution 0.968 0.180 0.155 0.997 sum 0.526 1.334 10.875 10.969 Atomic orbital electron populations 1.21736 0.96081 1.00936 1.01791 1.21471 0.95681 0.97312 1.01592 1.21854 0.95476 0.96134 1.02812 1.21799 0.94556 0.84134 1.01296 1.42751 1.54431 1.11213 1.02276 1.19123 1.41047 0.98572 0.85183 0.87223 1.25447 0.95761 0.98656 0.94576 1.69804 1.38479 1.40054 0.98412 0.86838 0.80515 0.82183 0.79776 1.19633 1.20858 1.18218 1.18406 0.92064 0.91435 0.84962 1.21035 1.12004 0.98822 0.97628 1.17947 0.91885 0.92778 0.92221 1.20704 1.03099 0.95519 0.97629 1.20787 0.96242 0.98709 0.91262 1.18548 1.13645 0.98427 0.90036 1.21333 0.73871 0.78688 0.89852 1.90783 1.49706 1.65300 1.36039 1.86565 1.71793 1.34839 1.34325 1.23190 1.01973 0.97940 0.82535 1.21212 0.89490 0.91256 0.96895 1.18491 1.11029 0.99324 0.93229 1.22705 0.90899 0.89860 0.94432 1.66820 1.23247 1.36772 0.98038 0.92852 0.92812 0.93234 0.92384 0.92165 0.91525 0.91378 0.91695 0.90913 0.90757 0.84491 0.85636 0.85758 0.88376 0.92125 0.92140 0.84977 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.12 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.12 -2.21 5.54 -26.73 -0.15 -2.35 16 4 C 0.11 2.11 4.16 -4.04 -0.02 2.10 16 5 N -0.42 -9.44 2.25 -115.17 -0.26 -9.70 16 6 C -0.31 -7.65 8.62 -15.09 -0.13 -7.78 16 7 H 0.11 2.88 7.39 -52.49 -0.39 2.50 16 8 C 0.07 1.63 5.28 -17.45 -0.09 1.54 16 9 N -0.84 -21.52 13.96 55.49 0.77 -20.74 16 10 Si 0.88 19.19 25.14 -169.99 -4.27 14.92 16 11 H -0.27 -5.59 6.67 56.52 0.38 -5.21 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 13 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 14 C 0.36 7.81 7.29 -154.92 -1.13 6.69 16 15 C -0.27 -5.55 9.04 -38.79 -0.35 -5.90 16 16 C 0.06 1.05 5.75 -106.75 -0.61 0.44 16 17 C -0.15 -2.44 9.77 -39.59 -0.39 -2.83 16 18 C -0.05 -0.76 9.51 -39.51 -0.38 -1.13 16 19 C -0.20 -3.17 5.87 -104.97 -0.62 -3.78 16 20 C 0.51 7.85 7.88 34.52 0.27 8.12 16 21 O -0.53 -8.93 16.09 -19.26 -0.31 -9.24 16 22 O -0.36 -4.70 9.77 -40.62 -0.40 -5.10 16 23 C 0.04 0.35 10.57 101.05 1.07 1.42 16 24 C 0.03 0.50 9.36 -38.73 -0.36 0.14 16 25 C -0.22 -3.68 5.74 -106.83 -0.61 -4.30 16 26 C 0.20 3.32 11.02 -16.97 -0.19 3.13 16 27 N -0.54 -10.42 9.12 -12.07 -0.11 -10.53 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.35 3.46 -51.93 -0.18 1.17 16 36 H 0.07 1.41 7.51 -51.93 -0.39 1.02 16 37 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.14 2.94 6.67 -52.49 -0.35 2.59 16 39 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.12 1.58 7.56 -52.49 -0.40 1.18 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.13 1.81 7.61 -52.49 -0.40 1.41 16 45 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -27.51 374.49 -8.74 -36.25 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.34 Total: 6.40 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.47 Total: -7.91 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.41 Total: -40.96 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.71 Total: -14.33 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.27 Total: 14.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.51 -8.74 -36.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.756 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds