Wall clock time and date at job start Tue Mar 31 2020 16:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47050 * 2 1 4 4 C 1.53001 * 109.47050 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47093 * 179.97438 * 4 3 2 6 6 C 1.36843 * 119.99675 * 269.99914 * 5 4 3 7 7 H 1.08001 * 119.99508 * 141.46699 * 6 5 4 8 8 C 1.38833 * 120.00412 * 321.46319 * 6 5 4 9 9 N 1.31552 * 119.99731 * 156.93778 * 8 6 5 10 10 Si 1.86797 * 120.00208 * 336.93324 * 8 6 5 11 11 H 1.48502 * 109.47026 * 95.54944 * 10 8 6 12 12 H 1.48498 * 109.47567 * 215.55259 * 10 8 6 13 13 H 1.48503 * 109.46793 * 335.55615 * 10 8 6 14 14 C 1.38700 * 119.99852 * 90.00343 * 5 4 3 15 15 C 1.38341 * 119.24057 * 170.46968 * 14 5 4 16 16 C 1.40248 * 118.59519 * 179.97438 * 15 14 5 17 17 C 1.40576 * 121.85673 * 180.02562 * 16 15 14 18 18 C 1.35764 * 119.84887 * 179.97438 * 17 16 15 19 19 C 1.40768 * 120.85315 * 359.97438 * 18 17 16 20 20 C 1.47536 * 119.69356 * 180.02562 * 19 18 17 21 21 O 1.21497 * 120.00065 * 179.97438 * 20 19 18 22 22 O 1.34746 * 120.00075 * 0.02562 * 20 19 18 23 23 C 1.45199 * 117.00541 * 179.97438 * 22 20 19 24 24 C 1.38732 * 120.61419 * 0.04562 * 19 18 17 25 25 C 1.40016 * 119.35396 * 359.95575 * 24 19 18 26 26 C 1.40579 * 121.74123 * 180.02562 * 25 24 19 27 27 N 1.31130 * 120.17921 * 179.97438 * 26 25 24 28 28 H 1.09001 * 109.46986 * 299.99995 * 1 2 3 29 29 H 1.09002 * 109.47242 * 59.99724 * 1 2 3 30 30 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47007 * 240.00559 * 2 1 3 32 32 H 1.08994 * 109.47435 * 120.00038 * 2 1 3 33 33 H 1.09001 * 109.47222 * 60.00150 * 3 2 1 34 34 H 1.09002 * 109.47323 * 300.00225 * 3 2 1 35 35 H 1.09002 * 109.47007 * 60.00559 * 4 3 2 36 36 H 1.08994 * 109.47435 * 300.00038 * 4 3 2 37 37 H 0.96996 * 119.99510 * 179.97438 * 9 8 6 38 38 H 1.07997 * 120.70790 * 0.02562 * 15 14 5 39 39 H 1.07995 * 120.07752 * 359.95162 * 17 16 15 40 40 H 1.08000 * 119.57370 * 179.97438 * 18 17 16 41 41 H 1.08996 * 109.47246 * 179.97438 * 23 22 20 42 42 H 1.09002 * 109.46309 * 300.00257 * 23 22 20 43 43 H 1.08994 * 109.46758 * 59.98968 * 23 22 20 44 44 H 1.08000 * 120.31787 * 179.97438 * 24 19 18 45 45 H 1.08000 * 119.90906 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2869 3.4681 -1.1854 7 1 4.0388 4.5142 -1.2879 8 6 4.8378 2.7771 -2.2562 9 7 4.6514 3.2102 -3.4843 10 14 5.8437 1.2326 -1.9530 11 1 4.9740 0.0382 -2.1027 12 1 6.9534 1.1633 -2.9374 13 1 6.4032 1.2683 -0.5779 14 6 4.2891 3.4783 1.2009 15 6 4.9338 4.7022 1.1905 16 6 5.1596 5.3524 2.4125 17 6 5.8076 6.5980 2.4815 18 6 6.0045 7.1913 3.6867 19 6 5.5671 6.5756 4.8746 20 6 5.7940 7.2435 6.1704 21 8 5.4184 6.7173 7.1991 22 8 6.4168 8.4376 6.2129 23 6 6.6055 9.0365 7.5221 24 6 4.9251 5.3463 4.8382 25 6 4.7130 4.7190 3.6045 26 6 4.0676 3.4737 3.5093 27 7 3.8846 2.9140 2.3377 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8892 36 1 3.9330 0.9288 0.8908 37 1 5.0366 2.7276 -4.2323 38 1 5.2557 5.1481 0.2610 39 1 6.1482 7.0817 1.5781 40 1 6.5032 8.1481 3.7346 41 1 7.1182 9.9923 7.4140 42 1 5.6350 9.1954 7.9921 43 1 7.2052 8.3710 8.1430 44 1 4.5919 4.8780 5.7525 45 1 3.7216 2.9767 4.4036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:09 Heat of formation + Delta-G solvation = -40.680084 kcal Electronic energy + Delta-G solvation = -27155.269366 eV Core-core repulsion = 23330.245052 eV Total energy + Delta-G solvation = -3825.024314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.79180 -41.11994 -39.28892 -37.55995 -37.18862 -35.69414 -34.24272 -33.50022 -32.05254 -30.81754 -29.39503 -28.58785 -26.88630 -25.18155 -24.93038 -23.46830 -23.08360 -22.09237 -21.94915 -19.80614 -18.99798 -18.49719 -18.20447 -17.68075 -17.29110 -16.78990 -16.71265 -16.23368 -15.83636 -15.72826 -15.44855 -15.02194 -14.78446 -14.71064 -14.44387 -14.38377 -14.26012 -14.02884 -13.89876 -13.48453 -13.32411 -13.01412 -12.97704 -12.82076 -12.78495 -12.19270 -12.17556 -12.11529 -11.95624 -11.79277 -11.75052 -11.57416 -11.47351 -11.18467 -10.93239 -10.35261 -10.32710 -9.65829 -8.65535 -8.31854 -6.06449 -0.57230 -0.03703 0.94931 1.15455 1.28406 1.36347 1.48650 1.79195 2.07634 2.32785 2.46445 2.78943 3.32860 3.62152 3.80457 3.86991 3.93965 3.97045 4.07391 4.23125 4.25563 4.26904 4.29815 4.35199 4.37264 4.38997 4.53936 4.72410 4.77594 4.86140 4.90006 4.92737 4.93711 4.97436 5.00878 5.09054 5.23350 5.26797 5.32625 5.34533 5.36808 5.45473 5.50075 5.60974 5.78318 5.91261 6.00009 6.49663 6.75679 6.87627 7.10565 7.57764 8.48356 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.003030 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.858692 B = 9238.244972 C =10438.987135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.114 4.114 4 C 0.108 3.892 5 N -0.451 5.451 6 C -0.315 4.315 7 H 0.071 0.929 8 C 0.029 3.971 9 N -0.888 5.888 10 Si 0.932 3.068 11 H -0.252 1.252 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.362 3.638 15 C -0.293 4.293 16 C 0.047 3.953 17 C -0.161 4.161 18 C -0.034 4.034 19 C -0.198 4.198 20 C 0.519 3.481 21 O -0.542 6.542 22 O -0.360 6.360 23 C 0.029 3.971 24 C 0.037 3.963 25 C -0.215 4.215 26 C 0.211 3.789 27 N -0.550 5.550 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.283 0.717 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.152 0.848 41 H 0.132 0.868 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.158 0.842 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 2.500 15.554 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.153 4.153 4 C -0.014 4.014 5 N -0.141 5.141 6 C -0.444 4.444 7 H 0.088 0.912 8 C -0.177 4.177 9 N -0.523 5.523 10 Si 0.757 3.243 11 H -0.177 1.177 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.132 3.868 15 C -0.321 4.321 16 C 0.042 3.958 17 C -0.180 4.180 18 C -0.053 4.053 19 C -0.201 4.201 20 C 0.367 3.633 21 O -0.435 6.435 22 O -0.276 6.276 23 C -0.064 4.064 24 C 0.016 3.984 25 C -0.220 4.220 26 C 0.034 3.966 27 N -0.264 5.264 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.170 0.830 41 H 0.150 0.850 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.176 0.824 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.076 1.383 15.066 15.130 hybrid contribution 0.957 0.552 -0.551 1.235 sum 0.882 1.936 14.515 14.670 Atomic orbital electron populations 1.21711 0.94463 1.02348 1.01673 1.21466 0.97087 0.94869 1.02237 1.21753 0.94215 0.98141 1.01147 1.21812 0.95716 0.83047 1.00849 1.42642 1.57629 1.12103 1.01683 1.18712 1.41686 0.97269 0.86721 0.91162 1.25921 0.96391 1.01152 0.94189 1.69876 1.41110 1.42196 0.99101 0.86038 0.79382 0.80263 0.78616 1.17696 1.20858 1.19357 1.18658 0.91323 0.91063 0.85709 1.21029 1.13627 0.99503 0.97953 1.18219 0.91942 0.93667 0.91959 1.20874 1.03217 0.94965 0.98932 1.21068 0.94708 0.99301 0.90260 1.18862 1.12159 0.98323 0.90741 1.21170 0.73702 0.79258 0.89149 1.90788 1.50331 1.65894 1.36474 1.86543 1.70872 1.33633 1.36557 1.23565 1.02671 0.99220 0.80905 1.21427 0.88839 0.91163 0.96930 1.18738 1.10333 0.99573 0.93324 1.23542 0.88714 0.89442 0.94899 1.66935 1.24187 1.37179 0.98128 0.92473 0.93492 0.91008 0.92492 0.90696 0.92076 0.93997 0.92839 0.90222 0.90655 0.86710 0.84687 0.82990 0.84954 0.91874 0.91879 0.82429 0.78099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.12 -3.35 5.93 30.59 0.18 -3.17 16 3 C -0.11 -4.16 5.54 30.59 0.17 -3.99 16 4 C 0.11 4.47 4.16 86.38 0.36 4.83 16 5 N -0.45 -21.27 2.25 -518.30 -1.16 -22.44 16 6 C -0.32 -16.79 8.62 84.05 0.72 -16.07 16 7 H 0.07 4.13 7.39 -2.91 -0.02 4.11 16 8 C 0.03 1.53 5.28 84.88 0.45 1.98 16 9 N -0.89 -49.08 13.96 21.65 0.30 -48.78 16 10 Si 0.93 41.41 25.14 68.60 1.72 43.14 16 11 H -0.25 -10.27 6.67 99.48 0.66 -9.60 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 C 0.36 16.04 7.29 132.74 0.97 17.01 16 15 C -0.29 -12.71 9.04 22.78 0.21 -12.50 16 16 C 0.05 1.72 5.75 -21.24 -0.12 1.60 16 17 C -0.16 -4.99 9.77 22.27 0.22 -4.77 16 18 C -0.03 -0.91 9.51 22.31 0.21 -0.70 16 19 C -0.20 -5.40 5.87 -20.09 -0.12 -5.52 16 20 C 0.52 13.74 7.88 70.27 0.55 14.30 16 21 O -0.54 -16.25 16.09 19.84 0.32 -15.93 16 22 O -0.36 -7.93 9.77 -56.56 -0.55 -8.48 16 23 C 0.03 0.43 10.57 113.37 1.20 1.63 16 24 C 0.04 1.00 9.36 22.82 0.21 1.21 16 25 C -0.21 -6.80 5.74 -21.30 -0.12 -6.92 16 26 C 0.21 6.42 11.02 85.37 0.94 7.36 16 27 N -0.55 -20.95 9.12 -192.09 -1.75 -22.70 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 2.29 3.46 -2.39 -0.01 2.28 16 36 H 0.08 3.09 7.51 -2.39 -0.02 3.07 16 37 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 38 H 0.11 5.41 6.67 -2.91 -0.02 5.39 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.15 3.22 7.56 -2.91 -0.02 3.20 16 41 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.16 3.52 7.61 -2.91 -0.02 3.50 16 45 H 0.20 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -63.74 374.49 6.58 -57.16 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.95 Total: 24.48 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 6.74 Total: -6.45 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -2.61 Total: -93.92 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.23 Total: -24.41 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.72 Total: 43.14 kcal Total: -63.74 6.58 -57.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.483 kcal (2) G-P(sol) polarization free energy of solvation -63.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds