Wall clock time and date at job start Tue Mar 31 2020 16:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47163 * 2 1 4 4 C 1.52999 * 109.47163 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47083 * 180.02562 * 4 3 2 6 6 C 1.36846 * 119.99853 * 93.55411 * 5 4 3 7 7 H 1.08008 * 119.99415 * 209.50729 * 6 5 4 8 8 C 1.38870 * 120.00380 * 29.23876 * 6 5 4 9 9 N 1.31520 * 120.00215 * 208.02216 * 8 6 5 10 10 Si 1.86796 * 119.99999 * 28.01863 * 8 6 5 11 11 H 1.48500 * 109.47046 * 359.92179 * 10 8 6 12 12 H 1.48503 * 109.47362 * 119.92454 * 10 8 6 13 13 H 1.48505 * 109.47202 * 239.92114 * 10 8 6 14 14 C 1.38563 * 120.00075 * 273.55396 * 5 4 3 15 15 C 1.40294 * 119.26040 * 187.11807 * 14 5 4 16 16 C 1.36336 * 119.80258 * 179.73351 * 15 14 5 17 17 C 1.40697 * 118.31013 * 0.54798 * 16 15 14 18 18 C 1.41484 * 119.25992 * 359.70020 * 17 16 15 19 19 C 1.40698 * 119.28141 * 179.97438 * 18 17 16 20 20 C 1.36288 * 120.21792 * 359.97438 * 19 18 17 21 21 C 1.38871 * 121.21796 * 0.02562 * 20 19 18 22 22 C 1.38852 * 120.51921 * 359.97438 * 21 20 19 23 23 C 1.47424 * 120.38104 * 180.02562 * 22 21 20 24 24 O 1.21514 * 119.99773 * 185.85118 * 23 22 21 25 25 O 1.34763 * 119.99711 * 5.85256 * 23 22 21 26 26 C 1.45199 * 116.99567 * 180.02562 * 25 23 22 27 27 N 1.31810 * 119.25335 * 7.38779 * 14 5 4 28 28 H 1.09004 * 109.47262 * 60.00188 * 1 2 3 29 29 H 1.09007 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47396 * 299.99972 * 1 2 3 31 31 H 1.08996 * 109.47396 * 240.00028 * 2 1 3 32 32 H 1.09001 * 109.46787 * 119.99965 * 2 1 3 33 33 H 1.08996 * 109.46942 * 59.99749 * 3 2 1 34 34 H 1.09004 * 109.46878 * 300.00047 * 3 2 1 35 35 H 1.08996 * 109.47396 * 60.00028 * 4 3 2 36 36 H 1.09001 * 109.46787 * 299.99965 * 4 3 2 37 37 H 0.96997 * 119.99968 * 179.97438 * 9 8 6 38 38 H 1.07997 * 120.09865 * 0.02562 * 15 14 5 39 39 H 1.07998 * 120.84221 * 180.22370 * 16 15 14 40 40 H 1.07997 * 119.89069 * 180.02562 * 19 18 17 41 41 H 1.08000 * 119.38580 * 180.02562 * 20 19 18 42 42 H 1.08002 * 119.74733 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47622 * 60.00123 * 26 25 23 44 44 H 1.09000 * 109.47249 * 179.97438 * 26 25 23 45 45 H 1.09006 * 109.47377 * 299.99678 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3562 3.4436 1.1831 7 1 4.2512 4.5148 1.2728 8 6 4.7880 2.6948 2.2699 9 7 4.5575 3.1183 3.4936 10 14 5.6961 1.0859 1.9940 11 1 5.8254 0.8342 0.5362 12 1 7.0476 1.1694 2.6037 13 1 4.9373 -0.0250 2.6228 14 6 4.2186 3.5024 -1.1974 15 6 4.8270 4.7666 -1.1929 16 6 4.9952 5.4418 -2.3653 17 6 4.5355 4.8425 -3.5523 18 6 3.9250 3.5675 -3.4919 19 6 3.4647 2.9680 -4.6786 20 6 3.6062 3.6113 -5.8717 21 6 4.2030 4.8629 -5.9483 22 6 4.6718 5.4918 -4.8026 23 6 5.3044 6.8207 -4.8873 24 8 5.8072 7.3184 -3.8993 25 8 5.3249 7.4836 -6.0605 26 6 5.9650 8.7868 -6.0700 27 7 3.7912 2.9481 -2.3142 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 4.8588 2.5950 4.2527 38 1 5.1653 5.2015 -0.2641 39 1 5.4646 6.4143 -2.3817 40 1 2.9968 1.9953 -4.6437 41 1 3.2476 3.1389 -6.7743 42 1 4.3033 5.3510 -6.9065 43 1 7.0090 8.6811 -5.7751 44 1 5.9124 9.2101 -7.0731 45 1 5.4546 9.4476 -5.3692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:17 Heat of formation + Delta-G solvation = -11.821328 kcal Electronic energy + Delta-G solvation = -27795.343557 eV Core-core repulsion = 23971.570653 eV Total energy + Delta-G solvation = -3823.772904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.65818 -39.60425 -37.80607 -36.38561 -35.65692 -34.15191 -32.68745 -32.30223 -30.09032 -29.57332 -28.19107 -27.59267 -25.01974 -24.23173 -23.37081 -22.52671 -21.18660 -20.73884 -20.57573 -18.45102 -17.30887 -16.90851 -16.61457 -16.40496 -16.25508 -15.77703 -15.35098 -14.86123 -14.23909 -14.20633 -14.09093 -13.78087 -13.56786 -13.18610 -13.10239 -12.93764 -12.66229 -12.50620 -12.21315 -12.15253 -12.10180 -11.79865 -11.59158 -11.39458 -11.08494 -10.88099 -10.80381 -10.74995 -10.67081 -10.46620 -10.15527 -10.08819 -9.83716 -9.79465 -9.39244 -8.72895 -8.45687 -7.91433 -7.02273 -6.80623 -4.05551 0.60939 1.65188 2.26648 2.76050 2.93326 2.98738 3.09190 3.14020 3.62912 3.87406 4.08405 4.59225 4.85519 4.95428 5.03176 5.09200 5.11655 5.27551 5.32992 5.36710 5.40888 5.49039 5.50784 5.58390 5.70494 5.73348 5.88436 6.00491 6.05847 6.10590 6.16051 6.19023 6.24726 6.30986 6.36001 6.44631 6.49340 6.64128 6.71629 6.76029 6.77751 6.90500 7.00778 7.12600 7.26804 7.41420 7.82906 7.90197 8.22567 8.68483 8.90917 9.37946 10.27331 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.003755 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.782123 B = 7454.579650 C = 8884.623809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.127 4.127 4 C 0.123 3.877 5 N -0.415 5.415 6 C -0.326 4.326 7 H 0.112 0.888 8 C 0.067 3.933 9 N -0.833 5.833 10 Si 0.874 3.126 11 H -0.257 1.257 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.379 3.621 15 C -0.171 4.171 16 C -0.073 4.073 17 C -0.131 4.131 18 C 0.198 3.802 19 C -0.097 4.097 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.085 4.085 23 C 0.511 3.489 24 O -0.504 6.504 25 O -0.357 6.357 26 C 0.036 3.964 27 N -0.590 5.590 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.281 0.719 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 1.295 -14.201 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.166 4.166 4 C 0.000 4.000 5 N -0.104 5.104 6 C -0.453 4.453 7 H 0.130 0.870 8 C -0.144 4.144 9 N -0.464 5.464 10 Si 0.700 3.300 11 H -0.181 1.181 12 H -0.209 1.209 13 H -0.199 1.199 14 C 0.131 3.869 15 C -0.194 4.194 16 C -0.097 4.097 17 C -0.137 4.137 18 C 0.070 3.930 19 C -0.119 4.119 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.087 4.087 23 C 0.358 3.642 24 O -0.394 6.394 25 O -0.274 6.274 26 C -0.058 4.058 27 N -0.316 5.316 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.944 0.524 -13.288 13.440 hybrid contribution 1.004 0.223 0.232 1.054 sum -0.940 0.747 -13.056 13.111 Atomic orbital electron populations 1.21732 0.96109 1.00872 1.01784 1.21464 0.95663 0.97350 1.01527 1.21879 0.95634 0.96135 1.02930 1.21635 0.94144 0.83779 1.00469 1.42721 1.54082 1.11246 1.02399 1.19148 1.45555 0.95573 0.85050 0.87046 1.25310 0.95776 0.98847 0.94449 1.69859 1.38448 1.39698 0.98394 0.86935 0.80303 0.82844 0.79898 1.18087 1.20892 1.19941 1.18645 0.92047 0.90304 0.85854 1.21604 1.02654 0.95598 0.99581 1.22057 0.96137 1.00759 0.90697 1.18295 1.06212 0.96672 0.92542 1.18348 0.93425 0.89284 0.91962 1.20789 1.00324 1.00134 0.90606 1.20556 0.99978 0.94951 0.97533 1.21057 0.99536 0.95716 0.97126 1.18807 1.04083 0.91249 0.94575 1.21462 0.76502 0.85682 0.80554 1.90650 1.43941 1.68574 1.36197 1.86576 1.72621 1.32549 1.35607 1.23231 0.97741 0.81440 1.03352 1.67591 1.31244 1.36355 0.96452 0.92832 0.93278 0.92849 0.92132 0.92494 0.91522 0.91136 0.90720 0.92709 0.90886 0.84441 0.82213 0.85552 0.85938 0.85562 0.91937 0.88275 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.86 5.93 -26.73 -0.16 -2.02 16 3 C -0.13 -2.37 5.53 -26.73 -0.15 -2.52 16 4 C 0.12 2.59 3.58 -4.04 -0.01 2.57 16 5 N -0.42 -9.66 2.40 -114.98 -0.28 -9.93 16 6 C -0.33 -8.17 8.98 -15.08 -0.14 -8.30 16 7 H 0.11 2.94 6.84 -52.48 -0.36 2.58 16 8 C 0.07 1.68 5.24 -17.45 -0.09 1.59 16 9 N -0.83 -21.74 13.96 55.49 0.77 -20.97 16 10 Si 0.87 19.41 25.17 -169.99 -4.28 15.13 16 11 H -0.26 -5.73 6.23 56.52 0.35 -5.37 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 C 0.38 8.61 7.31 -155.51 -1.14 7.47 16 15 C -0.17 -3.70 9.17 -39.49 -0.36 -4.06 16 16 C -0.07 -1.46 9.27 -39.34 -0.36 -1.83 16 17 C -0.13 -2.54 5.77 -106.47 -0.61 -3.15 16 18 C 0.20 3.90 6.60 -84.87 -0.56 3.34 16 19 C -0.10 -1.56 9.96 -39.35 -0.39 -1.95 16 20 C -0.11 -1.48 9.92 -40.05 -0.40 -1.88 16 21 C -0.11 -1.60 9.60 -39.12 -0.38 -1.97 16 22 C -0.09 -1.43 5.90 -104.67 -0.62 -2.05 16 23 C 0.51 8.19 7.85 34.47 0.27 8.47 16 24 O -0.50 -9.00 13.18 -19.28 -0.25 -9.26 16 25 O -0.36 -4.66 9.83 -40.66 -0.40 -5.06 16 26 C 0.04 0.34 10.57 101.05 1.07 1.41 16 27 N -0.59 -12.70 9.12 -10.21 -0.09 -12.79 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 35 H 0.07 1.55 7.60 -51.93 -0.39 1.15 16 36 H 0.06 1.18 3.13 -51.93 -0.16 1.02 16 37 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.14 2.95 6.39 -52.49 -0.34 2.61 16 39 H 0.16 3.13 4.94 -52.53 -0.26 2.87 16 40 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.13 1.45 7.60 -52.49 -0.40 1.05 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -27.84 367.48 -8.81 -36.65 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.16 Total: 7.15 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -3.66 Total: -6.45 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.41 Total: -43.70 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.65 Total: -14.32 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.28 Total: 15.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.84 -8.81 -36.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.832 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds