Wall clock time and date at job start Tue Mar 31 2020 16:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47163 * 2 1 4 4 C 1.52999 * 109.47163 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47083 * 180.02562 * 4 3 2 6 6 C 1.36846 * 119.99853 * 93.55411 * 5 4 3 7 7 H 1.08008 * 119.99415 * 209.50729 * 6 5 4 8 8 C 1.38870 * 120.00380 * 29.23876 * 6 5 4 9 9 N 1.31520 * 120.00215 * 208.02216 * 8 6 5 10 10 Si 1.86796 * 119.99999 * 28.01863 * 8 6 5 11 11 H 1.48500 * 109.47046 * 359.92179 * 10 8 6 12 12 H 1.48503 * 109.47362 * 119.92454 * 10 8 6 13 13 H 1.48505 * 109.47202 * 239.92114 * 10 8 6 14 14 C 1.38563 * 120.00075 * 273.55396 * 5 4 3 15 15 C 1.40294 * 119.26040 * 187.11807 * 14 5 4 16 16 C 1.36336 * 119.80258 * 179.73351 * 15 14 5 17 17 C 1.40697 * 118.31013 * 0.54798 * 16 15 14 18 18 C 1.41484 * 119.25992 * 359.70020 * 17 16 15 19 19 C 1.40698 * 119.28141 * 179.97438 * 18 17 16 20 20 C 1.36288 * 120.21792 * 359.97438 * 19 18 17 21 21 C 1.38871 * 121.21796 * 0.02562 * 20 19 18 22 22 C 1.38852 * 120.51921 * 359.97438 * 21 20 19 23 23 C 1.47424 * 120.38104 * 180.02562 * 22 21 20 24 24 O 1.21514 * 119.99773 * 185.85118 * 23 22 21 25 25 O 1.34763 * 119.99711 * 5.85256 * 23 22 21 26 26 C 1.45199 * 116.99567 * 180.02562 * 25 23 22 27 27 N 1.31810 * 119.25335 * 7.38779 * 14 5 4 28 28 H 1.09004 * 109.47262 * 60.00188 * 1 2 3 29 29 H 1.09007 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47396 * 299.99972 * 1 2 3 31 31 H 1.08996 * 109.47396 * 240.00028 * 2 1 3 32 32 H 1.09001 * 109.46787 * 119.99965 * 2 1 3 33 33 H 1.08996 * 109.46942 * 59.99749 * 3 2 1 34 34 H 1.09004 * 109.46878 * 300.00047 * 3 2 1 35 35 H 1.08996 * 109.47396 * 60.00028 * 4 3 2 36 36 H 1.09001 * 109.46787 * 299.99965 * 4 3 2 37 37 H 0.96997 * 119.99968 * 179.97438 * 9 8 6 38 38 H 1.07997 * 120.09865 * 0.02562 * 15 14 5 39 39 H 1.07998 * 120.84221 * 180.22370 * 16 15 14 40 40 H 1.07997 * 119.89069 * 180.02562 * 19 18 17 41 41 H 1.08000 * 119.38580 * 180.02562 * 20 19 18 42 42 H 1.08002 * 119.74733 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47622 * 60.00123 * 26 25 23 44 44 H 1.09000 * 109.47249 * 179.97438 * 26 25 23 45 45 H 1.09006 * 109.47377 * 299.99678 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3562 3.4436 1.1831 7 1 4.2512 4.5148 1.2728 8 6 4.7880 2.6948 2.2699 9 7 4.5575 3.1183 3.4936 10 14 5.6961 1.0859 1.9940 11 1 5.8254 0.8342 0.5362 12 1 7.0476 1.1694 2.6037 13 1 4.9373 -0.0250 2.6228 14 6 4.2186 3.5024 -1.1974 15 6 4.8270 4.7666 -1.1929 16 6 4.9952 5.4418 -2.3653 17 6 4.5355 4.8425 -3.5523 18 6 3.9250 3.5675 -3.4919 19 6 3.4647 2.9680 -4.6786 20 6 3.6062 3.6113 -5.8717 21 6 4.2030 4.8629 -5.9483 22 6 4.6718 5.4918 -4.8026 23 6 5.3044 6.8207 -4.8873 24 8 5.8072 7.3184 -3.8993 25 8 5.3249 7.4836 -6.0605 26 6 5.9650 8.7868 -6.0700 27 7 3.7912 2.9481 -2.3142 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 4.8588 2.5950 4.2527 38 1 5.1653 5.2015 -0.2641 39 1 5.4646 6.4143 -2.3817 40 1 2.9968 1.9953 -4.6437 41 1 3.2476 3.1389 -6.7743 42 1 4.3033 5.3510 -6.9065 43 1 7.0090 8.6811 -5.7751 44 1 5.9124 9.2101 -7.0731 45 1 5.4546 9.4476 -5.3692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:15 Heat of formation + Delta-G solvation = -25.100099 kcal Electronic energy + Delta-G solvation = -27795.919368 eV Core-core repulsion = 23971.570653 eV Total energy + Delta-G solvation = -3824.348715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.00902 -40.99858 -39.31226 -37.56488 -37.10701 -35.59379 -34.24490 -33.99062 -31.49014 -30.99903 -29.67151 -28.52428 -26.72850 -25.60106 -24.70042 -23.98142 -22.76414 -22.10552 -21.84512 -19.96970 -18.74785 -18.30452 -18.23239 -17.76246 -17.40390 -17.31050 -16.79720 -16.27994 -15.72116 -15.63802 -15.60150 -14.93352 -14.85030 -14.69608 -14.67425 -14.28959 -14.13498 -13.87906 -13.65167 -13.54312 -13.25190 -13.03354 -12.96267 -12.82170 -12.63682 -12.28261 -12.14308 -12.09795 -11.90533 -11.80480 -11.65024 -11.47069 -11.44398 -11.31093 -11.08099 -10.39686 -10.09076 -9.35230 -8.68040 -8.62635 -5.96163 -0.74559 0.19963 0.78043 1.16143 1.29488 1.36697 1.61867 1.68050 2.08080 2.19665 2.43417 2.81559 3.38072 3.63722 3.75443 3.92683 4.04430 4.05268 4.08620 4.13980 4.23406 4.28389 4.32706 4.36449 4.37891 4.45851 4.55247 4.61969 4.74411 4.77578 4.88770 4.90636 4.94952 4.96978 5.10512 5.10827 5.22785 5.28166 5.33741 5.37306 5.45546 5.46539 5.47926 5.54990 5.72833 5.88370 6.01618 6.48005 6.69538 6.95762 7.12839 7.65435 8.47378 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.003755 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.782123 B = 7454.579650 C = 8884.623809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.116 4.116 4 C 0.126 3.874 5 N -0.444 5.444 6 C -0.331 4.331 7 H 0.077 0.923 8 C 0.030 3.970 9 N -0.882 5.882 10 Si 0.928 3.072 11 H -0.260 1.260 12 H -0.285 1.285 13 H -0.258 1.258 14 C 0.377 3.623 15 C -0.207 4.207 16 C -0.059 4.059 17 C -0.150 4.150 18 C 0.165 3.835 19 C -0.094 4.094 20 C -0.091 4.091 21 C -0.075 4.075 22 C -0.108 4.108 23 C 0.513 3.487 24 O -0.532 6.532 25 O -0.349 6.349 26 C 0.028 3.972 27 N -0.587 5.587 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.284 0.716 38 H 0.122 0.878 39 H 0.163 0.837 40 H 0.145 0.855 41 H 0.177 0.823 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.140 0.860 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 0.250 -19.763 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.155 4.155 4 C 0.003 3.997 5 N -0.138 5.138 6 C -0.459 4.459 7 H 0.095 0.905 8 C -0.176 4.176 9 N -0.517 5.517 10 Si 0.752 3.248 11 H -0.184 1.184 12 H -0.213 1.213 13 H -0.183 1.183 14 C 0.129 3.871 15 C -0.231 4.231 16 C -0.083 4.083 17 C -0.156 4.156 18 C 0.039 3.961 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.094 4.094 22 C -0.110 4.110 23 C 0.360 3.640 24 O -0.425 6.425 25 O -0.265 6.265 26 C -0.065 4.065 27 N -0.313 5.313 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.140 0.860 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.194 0.806 42 H 0.184 0.816 43 H 0.080 0.920 44 H 0.158 0.842 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.705 -0.506 -18.962 19.161 hybrid contribution 1.210 0.812 1.250 1.919 sum -1.495 0.306 -17.713 17.778 Atomic orbital electron populations 1.21705 0.94349 1.02395 1.01653 1.21463 0.97188 0.94728 1.02229 1.21777 0.94302 0.98292 1.01145 1.21653 0.95361 0.82744 0.99924 1.42599 1.57336 1.12117 1.01748 1.18832 1.46298 0.94384 0.86392 0.90511 1.25792 0.96258 1.01580 0.94011 1.69920 1.41037 1.41646 0.99071 0.86100 0.79059 0.80250 0.79361 1.18435 1.21251 1.18336 1.18859 0.91596 0.90254 0.86350 1.21540 1.05268 0.96452 0.99797 1.22192 0.94779 1.00481 0.90845 1.18479 1.06686 0.97115 0.93352 1.18930 0.94644 0.89997 0.92529 1.21147 0.99339 1.00935 0.90012 1.21157 0.97449 0.94071 0.98300 1.21678 0.95026 0.95168 0.97539 1.18960 1.05416 0.92183 0.94439 1.21381 0.75940 0.85611 0.81035 1.90638 1.45225 1.69202 1.37399 1.86541 1.72519 1.33867 1.33581 1.23608 0.97355 0.79683 1.05828 1.67613 1.30220 1.36671 0.96812 0.92549 0.90869 0.93465 0.90764 0.92394 0.93959 0.92102 0.90608 0.93455 0.90647 0.85960 0.82024 0.83691 0.80609 0.81588 0.92012 0.84230 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.12 -3.51 5.93 30.59 0.18 -3.32 16 3 C -0.12 -4.48 5.53 30.59 0.17 -4.31 16 4 C 0.13 5.48 3.58 86.38 0.31 5.79 16 5 N -0.44 -21.99 2.40 -517.69 -1.24 -23.23 16 6 C -0.33 -18.09 8.98 84.06 0.76 -17.33 16 7 H 0.08 4.56 6.84 -2.91 -0.02 4.54 16 8 C 0.03 1.59 5.24 84.89 0.44 2.03 16 9 N -0.88 -49.41 13.96 21.66 0.30 -49.10 16 10 Si 0.93 42.01 25.17 68.60 1.73 43.73 16 11 H -0.26 -11.74 6.23 99.48 0.62 -11.12 16 12 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 14 C 0.38 18.03 7.31 133.67 0.98 19.01 16 15 C -0.21 -9.65 9.17 22.33 0.20 -9.45 16 16 C -0.06 -2.47 9.27 22.43 0.21 -2.26 16 17 C -0.15 -5.72 5.77 -21.06 -0.12 -5.84 16 18 C 0.17 6.27 6.60 40.26 0.27 6.53 16 19 C -0.09 -2.61 9.96 22.42 0.22 -2.39 16 20 C -0.09 -1.82 9.92 21.97 0.22 -1.60 16 21 C -0.07 -1.64 9.60 22.57 0.22 -1.43 16 22 C -0.11 -3.30 5.90 -19.90 -0.12 -3.42 16 23 C 0.51 15.29 7.85 70.24 0.55 15.84 16 24 O -0.53 -18.80 13.18 19.79 0.26 -18.54 16 25 O -0.35 -7.81 9.83 -56.73 -0.56 -8.37 16 26 C 0.03 0.44 10.57 113.37 1.20 1.64 16 27 N -0.59 -25.51 9.12 -186.23 -1.70 -27.21 16 28 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.41 8.08 -2.38 -0.02 2.39 16 35 H 0.08 3.19 7.60 -2.39 -0.02 3.17 16 36 H 0.05 2.10 3.13 -2.39 -0.01 2.09 16 37 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 38 H 0.12 5.92 6.39 -2.91 -0.02 5.91 16 39 H 0.16 6.65 4.94 -3.56 -0.02 6.63 16 40 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 41 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.17 2.49 7.60 -2.91 -0.02 2.47 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -66.75 367.48 6.11 -60.65 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.92 Total: 25.43 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 6.40 Total: -3.36 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -2.64 Total: -99.54 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.30 Total: -26.91 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.73 Total: 43.73 kcal Total: -66.75 6.11 -60.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.546 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds