Wall clock time and date at job start Tue Mar 31 2020 16:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47134 * 2 1 4 4 C 1.53001 * 109.47210 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47509 * 180.02562 * 4 3 2 6 6 C 1.36907 * 119.99758 * 274.79067 * 5 4 3 7 7 H 1.07998 * 119.99799 * 324.00097 * 6 5 4 8 8 C 1.38864 * 120.00097 * 144.01007 * 6 5 4 9 9 N 1.31512 * 120.00544 * 155.82490 * 8 6 5 10 10 Si 1.86806 * 119.99688 * 335.81640 * 8 6 5 11 11 H 1.48502 * 109.46664 * 90.31478 * 10 8 6 12 12 H 1.48496 * 109.46974 * 210.31338 * 10 8 6 13 13 H 1.48496 * 109.47386 * 330.31534 * 10 8 6 14 14 C 1.38166 * 120.00287 * 94.78753 * 5 4 3 15 15 N 1.31661 * 119.35205 * 275.66138 * 14 5 4 16 16 C 1.33715 * 121.65147 * 180.02562 * 15 14 5 17 17 C 1.40589 * 120.70643 * 180.02562 * 16 15 14 18 18 C 1.36141 * 119.82076 * 179.74664 * 17 16 15 19 19 C 1.39331 * 121.07847 * 0.22987 * 18 17 16 20 20 C 1.36181 * 120.84348 * 0.04710 * 19 18 17 21 21 C 1.40515 * 119.65014 * 359.97438 * 20 19 18 22 22 C 1.40576 * 121.09914 * 180.02562 * 21 20 19 23 23 C 1.38924 * 118.09673 * 179.20883 * 22 21 20 24 24 C 1.47383 * 120.31147 * 180.24534 * 23 22 21 25 25 O 1.21516 * 119.99489 * 184.69327 * 24 23 22 26 26 O 1.34758 * 120.00066 * 4.70346 * 24 23 22 27 27 C 1.45206 * 116.99691 * 179.97438 * 26 24 23 28 28 H 1.09001 * 109.47159 * 299.99948 * 1 2 3 29 29 H 1.09001 * 109.47338 * 59.99939 * 1 2 3 30 30 H 1.08996 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46739 * 239.99782 * 2 1 3 32 32 H 1.09000 * 109.47001 * 120.00485 * 2 1 3 33 33 H 1.08999 * 109.47378 * 60.00689 * 3 2 1 34 34 H 1.09000 * 109.47572 * 300.00135 * 3 2 1 35 35 H 1.09001 * 109.47433 * 59.99838 * 4 3 2 36 36 H 1.09001 * 109.46989 * 299.99893 * 4 3 2 37 37 H 0.96999 * 120.00333 * 179.97438 * 9 8 6 38 38 H 1.07996 * 120.08901 * 0.02562 * 17 16 15 39 39 H 1.08007 * 119.45962 * 180.26013 * 18 17 16 40 40 H 1.08004 * 119.57798 * 180.02562 * 19 18 17 41 41 H 1.07997 * 120.17568 * 179.97438 * 20 19 18 42 42 H 1.08001 * 120.94798 * 359.95146 * 22 21 20 43 43 H 1.08996 * 109.47014 * 59.99638 * 27 26 24 44 44 H 1.09000 * 109.47256 * 179.97438 * 27 26 24 45 45 H 1.08998 * 109.47134 * 299.99701 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1927 3.5026 -1.1812 7 1 4.5137 2.9808 -2.0706 8 6 3.9164 4.8624 -1.2357 9 7 4.4671 5.6086 -2.1682 10 14 2.7621 5.6318 0.0154 11 1 3.5437 6.0971 1.1893 12 1 2.0614 6.7863 -0.6020 13 1 1.7638 4.6235 0.4536 14 6 4.3834 3.4410 1.1925 15 7 3.4341 4.0146 1.9019 16 6 3.6970 4.6254 3.0620 17 6 2.6677 5.2312 3.8038 18 6 2.9549 5.8436 4.9853 19 6 4.2586 5.8863 5.4750 20 6 5.2834 5.3160 4.7830 21 6 5.0244 4.6755 3.5595 22 6 6.0592 4.0763 2.8202 23 6 5.7303 3.4455 1.6269 24 6 6.7759 2.7968 0.8157 25 8 6.4970 2.3214 -0.2673 26 8 8.0410 2.7306 1.2751 27 6 9.0183 2.0768 0.4231 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9287 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 4.2738 6.5583 -2.2064 38 1 1.6513 5.2069 3.4395 39 1 2.1590 6.3035 5.5524 40 1 4.4589 6.3783 6.4154 41 1 6.2899 5.3558 5.1725 42 1 7.0788 4.0952 3.1759 43 1 9.0797 2.6030 -0.5295 44 1 9.9934 2.0927 0.9100 45 1 8.7156 1.0443 0.2489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:20 Heat of formation + Delta-G solvation = 8.712278 kcal Electronic energy + Delta-G solvation = -29137.634148 eV Core-core repulsion = 25314.751648 eV Total energy + Delta-G solvation = -3822.882500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.59931 -39.39858 -37.63796 -35.59874 -35.56602 -33.91701 -33.17024 -31.83637 -30.22415 -29.49893 -28.04372 -27.29371 -24.71445 -24.21204 -23.45930 -21.81901 -21.11212 -20.93011 -20.26542 -18.53915 -17.63830 -17.06490 -16.34052 -15.83325 -15.70425 -15.35031 -15.28398 -14.83981 -14.40101 -14.09799 -13.75797 -13.72553 -13.48726 -13.07463 -13.00278 -12.91784 -12.69150 -12.41548 -12.08445 -11.95650 -11.78769 -11.50671 -11.44387 -11.28068 -10.89367 -10.70101 -10.57122 -10.51053 -10.36495 -10.25521 -10.01133 -9.86148 -9.76500 -9.68531 -8.74243 -8.46618 -8.24061 -7.78750 -7.24415 -6.24673 -3.55266 0.59914 1.11752 2.21949 2.87027 3.15834 3.52091 3.57968 3.61282 3.86850 4.34308 4.50958 4.64414 4.88074 4.96307 5.10121 5.11995 5.21170 5.33245 5.38986 5.41341 5.46841 5.49516 5.52788 5.55087 5.60278 5.71252 5.81033 5.93332 6.05948 6.16556 6.16835 6.19226 6.26554 6.29915 6.35540 6.41753 6.52708 6.58959 6.64011 6.67794 6.84208 6.87499 6.95259 7.13945 7.17877 7.84620 8.16865 8.46838 8.55865 8.80571 9.44092 9.74281 10.84073 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008046 B = 0.006788 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.240018 B = 4123.706089 C = 5289.254668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.150 3.850 5 N -0.517 5.517 6 C -0.224 4.224 7 H 0.095 0.905 8 C 0.029 3.971 9 N -0.868 5.868 10 Si 0.905 3.095 11 H -0.288 1.288 12 H -0.319 1.319 13 H -0.246 1.246 14 C 0.444 3.556 15 N -0.509 5.509 16 C 0.181 3.819 17 C -0.114 4.114 18 C -0.091 4.091 19 C -0.153 4.153 20 C -0.071 4.071 21 C -0.152 4.152 22 C 0.004 3.996 23 C -0.170 4.170 24 C 0.497 3.503 25 O -0.448 6.448 26 O -0.372 6.372 27 C 0.042 3.958 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.269 0.731 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -5.055 12.559 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.026 3.974 5 N -0.229 5.229 6 C -0.351 4.351 7 H 0.113 0.887 8 C -0.176 4.176 9 N -0.504 5.504 10 Si 0.738 3.262 11 H -0.216 1.216 12 H -0.250 1.250 13 H -0.171 1.171 14 C 0.203 3.797 15 N -0.226 5.226 16 C 0.055 3.945 17 C -0.133 4.133 18 C -0.111 4.111 19 C -0.172 4.172 20 C -0.090 4.090 21 C -0.155 4.155 22 C -0.022 4.022 23 C -0.178 4.178 24 C 0.338 3.662 25 O -0.331 6.331 26 O -0.291 6.291 27 C -0.052 4.052 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.162 0.838 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.440 -5.130 11.684 12.841 hybrid contribution 0.381 0.822 0.631 1.104 sum 1.820 -4.308 12.315 13.173 Atomic orbital electron populations 1.21750 0.96593 1.00539 1.01718 1.21494 0.95284 0.98081 1.01111 1.22186 0.98027 0.94850 1.02812 1.21213 0.91804 0.84694 0.99730 1.41479 1.69908 1.11370 1.00166 1.18981 1.37905 0.91951 0.86251 0.88712 1.25717 0.97781 0.96728 0.97417 1.69886 1.39426 1.06186 1.34937 0.86331 0.83689 0.77784 0.78419 1.21597 1.25037 1.17113 1.17985 0.85513 0.90094 0.86063 1.68222 1.36480 1.11510 1.06388 1.18780 0.91438 0.93946 0.90314 1.20803 0.98701 0.99146 0.94682 1.20807 0.96769 0.97970 0.95578 1.20680 0.92951 1.02768 1.00758 1.20916 0.99165 0.95870 0.93057 1.18624 0.94007 1.05021 0.97865 1.21982 0.98842 0.89882 0.91510 1.20489 0.94603 1.06292 0.96411 1.20717 0.81193 0.79018 0.85237 1.90930 1.81183 1.41351 1.19684 1.86501 1.19592 1.73486 1.49519 1.23100 0.89879 0.97285 0.94976 0.93113 0.92843 0.93566 0.92395 0.92875 0.92135 0.91467 0.91777 0.94248 0.92120 0.85392 0.85967 0.86179 0.85737 0.83804 0.91998 0.88862 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.83 5.93 -26.74 -0.16 -1.99 16 3 C -0.14 -2.66 5.51 -26.73 -0.15 -2.80 16 4 C 0.15 3.11 5.38 -4.04 -0.02 3.09 16 5 N -0.52 -12.63 0.91 -114.74 -0.10 -12.74 16 6 C -0.22 -6.25 8.34 -15.05 -0.13 -6.37 16 7 H 0.10 2.84 8.06 -52.49 -0.42 2.42 16 8 C 0.03 0.83 5.30 -17.46 -0.09 0.74 16 9 N -0.87 -26.41 13.96 55.49 0.77 -25.63 16 10 Si 0.90 24.26 23.86 -169.99 -4.06 20.21 16 11 H -0.29 -7.78 5.45 56.52 0.31 -7.47 16 12 H -0.32 -8.78 7.11 56.52 0.40 -8.38 16 13 H -0.25 -6.55 6.73 56.52 0.38 -6.17 16 14 C 0.44 10.51 4.39 -155.54 -0.68 9.83 16 15 N -0.51 -11.83 5.69 -9.96 -0.06 -11.89 16 16 C 0.18 3.71 5.08 -84.78 -0.43 3.28 16 17 C -0.11 -2.00 9.97 -39.45 -0.39 -2.39 16 18 C -0.09 -1.26 9.94 -39.93 -0.40 -1.66 16 19 C -0.15 -1.97 9.96 -39.91 -0.40 -2.36 16 20 C -0.07 -1.01 9.77 -39.46 -0.39 -1.39 16 21 C -0.15 -2.74 5.74 -106.78 -0.61 -3.35 16 22 C 0.00 0.07 9.47 -38.45 -0.36 -0.30 16 23 C -0.17 -3.65 5.90 -104.67 -0.62 -4.27 16 24 C 0.50 10.45 7.88 34.45 0.27 10.72 16 25 O -0.45 -10.62 13.41 -19.28 -0.26 -10.88 16 26 O -0.37 -6.41 9.86 -40.65 -0.40 -6.81 16 27 C 0.04 0.56 10.57 101.05 1.07 1.63 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 36 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 37 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 38 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 40 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.14 2.07 7.67 -52.49 -0.40 1.67 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -33.38 369.78 -8.48 -41.85 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.83 Total: -0.45 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -3.12 Total: 0.76 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.61 Total: -50.26 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.66 Total: -17.69 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -4.06 Total: 20.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.38 -8.48 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.567 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds