Wall clock time and date at job start Tue Mar 31 2020 16:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47134 * 2 1 4 4 C 1.53001 * 109.47210 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47509 * 180.02562 * 4 3 2 6 6 C 1.36907 * 119.99758 * 274.79067 * 5 4 3 7 7 H 1.07998 * 119.99799 * 324.00097 * 6 5 4 8 8 C 1.38864 * 120.00097 * 144.01007 * 6 5 4 9 9 N 1.31512 * 120.00544 * 155.82490 * 8 6 5 10 10 Si 1.86806 * 119.99688 * 335.81640 * 8 6 5 11 11 H 1.48502 * 109.46664 * 90.31478 * 10 8 6 12 12 H 1.48496 * 109.46974 * 210.31338 * 10 8 6 13 13 H 1.48496 * 109.47386 * 330.31534 * 10 8 6 14 14 C 1.38166 * 120.00287 * 94.78753 * 5 4 3 15 15 N 1.31661 * 119.35205 * 275.66138 * 14 5 4 16 16 C 1.33715 * 121.65147 * 180.02562 * 15 14 5 17 17 C 1.40589 * 120.70643 * 180.02562 * 16 15 14 18 18 C 1.36141 * 119.82076 * 179.74664 * 17 16 15 19 19 C 1.39331 * 121.07847 * 0.22987 * 18 17 16 20 20 C 1.36181 * 120.84348 * 0.04710 * 19 18 17 21 21 C 1.40515 * 119.65014 * 359.97438 * 20 19 18 22 22 C 1.40576 * 121.09914 * 180.02562 * 21 20 19 23 23 C 1.38924 * 118.09673 * 179.20883 * 22 21 20 24 24 C 1.47383 * 120.31147 * 180.24534 * 23 22 21 25 25 O 1.21516 * 119.99489 * 184.69327 * 24 23 22 26 26 O 1.34758 * 120.00066 * 4.70346 * 24 23 22 27 27 C 1.45206 * 116.99691 * 179.97438 * 26 24 23 28 28 H 1.09001 * 109.47159 * 299.99948 * 1 2 3 29 29 H 1.09001 * 109.47338 * 59.99939 * 1 2 3 30 30 H 1.08996 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46739 * 239.99782 * 2 1 3 32 32 H 1.09000 * 109.47001 * 120.00485 * 2 1 3 33 33 H 1.08999 * 109.47378 * 60.00689 * 3 2 1 34 34 H 1.09000 * 109.47572 * 300.00135 * 3 2 1 35 35 H 1.09001 * 109.47433 * 59.99838 * 4 3 2 36 36 H 1.09001 * 109.46989 * 299.99893 * 4 3 2 37 37 H 0.96999 * 120.00333 * 179.97438 * 9 8 6 38 38 H 1.07996 * 120.08901 * 0.02562 * 17 16 15 39 39 H 1.08007 * 119.45962 * 180.26013 * 18 17 16 40 40 H 1.08004 * 119.57798 * 180.02562 * 19 18 17 41 41 H 1.07997 * 120.17568 * 179.97438 * 20 19 18 42 42 H 1.08001 * 120.94798 * 359.95146 * 22 21 20 43 43 H 1.08996 * 109.47014 * 59.99638 * 27 26 24 44 44 H 1.09000 * 109.47256 * 179.97438 * 27 26 24 45 45 H 1.08998 * 109.47134 * 299.99701 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1927 3.5026 -1.1812 7 1 4.5137 2.9808 -2.0706 8 6 3.9164 4.8624 -1.2357 9 7 4.4671 5.6086 -2.1682 10 14 2.7621 5.6318 0.0154 11 1 3.5437 6.0971 1.1893 12 1 2.0614 6.7863 -0.6020 13 1 1.7638 4.6235 0.4536 14 6 4.3834 3.4410 1.1925 15 7 3.4341 4.0146 1.9019 16 6 3.6970 4.6254 3.0620 17 6 2.6677 5.2312 3.8038 18 6 2.9549 5.8436 4.9853 19 6 4.2586 5.8863 5.4750 20 6 5.2834 5.3160 4.7830 21 6 5.0244 4.6755 3.5595 22 6 6.0592 4.0763 2.8202 23 6 5.7303 3.4455 1.6269 24 6 6.7759 2.7968 0.8157 25 8 6.4970 2.3214 -0.2673 26 8 8.0410 2.7306 1.2751 27 6 9.0183 2.0768 0.4231 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9287 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 4.2738 6.5583 -2.2064 38 1 1.6513 5.2069 3.4395 39 1 2.1590 6.3035 5.5524 40 1 4.4589 6.3783 6.4154 41 1 6.2899 5.3558 5.1725 42 1 7.0788 4.0952 3.1759 43 1 9.0797 2.6030 -0.5295 44 1 9.9934 2.0927 0.9100 45 1 8.7156 1.0443 0.2489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:19 Heat of formation + Delta-G solvation = -10.807257 kcal Electronic energy + Delta-G solvation = -29138.480579 eV Core-core repulsion = 25314.751648 eV Total energy + Delta-G solvation = -3823.728931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.15593 -40.89076 -39.18945 -37.13455 -37.05914 -35.45649 -34.69130 -33.74577 -31.62713 -30.89529 -29.59642 -28.52125 -26.53801 -25.64114 -24.92649 -23.18676 -22.65898 -22.38650 -21.78620 -20.24182 -19.25532 -18.51202 -17.84990 -17.46402 -17.32360 -17.07482 -16.62480 -16.28413 -15.92069 -15.48741 -15.39253 -15.16864 -15.02677 -14.76967 -14.36496 -14.23073 -14.17828 -14.12338 -13.63821 -13.39641 -13.05700 -12.95168 -12.75801 -12.68089 -12.60816 -12.27464 -12.14971 -12.03413 -11.88855 -11.78835 -11.67059 -11.44020 -11.40493 -11.32270 -10.72725 -10.29432 -9.70361 -9.19673 -9.12466 -8.35406 -5.71222 -0.80977 -0.34650 0.83896 1.18313 1.34494 1.53561 1.71094 1.80031 2.16673 2.38997 2.65386 3.01168 3.11506 3.53994 3.62585 3.73894 3.86148 4.04463 4.10236 4.20488 4.22287 4.29667 4.35617 4.37223 4.38353 4.40333 4.44211 4.69049 4.71042 4.73180 4.76960 4.88730 4.91059 4.97377 5.02933 5.08399 5.12075 5.32851 5.38421 5.38952 5.41190 5.44670 5.47821 5.56980 5.81275 5.93609 6.05949 6.81623 6.89656 6.95791 7.49036 7.79816 8.80543 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008046 B = 0.006788 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.240018 B = 4123.706089 C = 5289.254668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.127 4.127 4 C 0.158 3.842 5 N -0.544 5.544 6 C -0.216 4.216 7 H 0.054 0.946 8 C -0.019 4.019 9 N -0.931 5.931 10 Si 0.965 3.035 11 H -0.294 1.294 12 H -0.339 1.339 13 H -0.255 1.255 14 C 0.446 3.554 15 N -0.535 5.535 16 C 0.141 3.859 17 C -0.148 4.148 18 C -0.066 4.066 19 C -0.129 4.129 20 C -0.069 4.069 21 C -0.154 4.154 22 C 0.027 3.973 23 C -0.210 4.210 24 C 0.502 3.498 25 O -0.487 6.487 26 O -0.362 6.362 27 C 0.035 3.965 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.262 0.738 38 H 0.121 0.879 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.189 0.811 43 H 0.047 0.953 44 H 0.142 0.858 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -4.935 18.787 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.167 4.167 4 C 0.035 3.965 5 N -0.260 5.260 6 C -0.345 4.345 7 H 0.072 0.928 8 C -0.217 4.217 9 N -0.573 5.573 10 Si 0.801 3.199 11 H -0.222 1.222 12 H -0.272 1.272 13 H -0.180 1.180 14 C 0.205 3.795 15 N -0.251 5.251 16 C 0.019 3.981 17 C -0.167 4.167 18 C -0.085 4.085 19 C -0.147 4.147 20 C -0.087 4.087 21 C -0.156 4.156 22 C 0.002 3.998 23 C -0.217 4.217 24 C 0.345 3.655 25 O -0.374 6.374 26 O -0.279 6.279 27 C -0.058 4.058 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.182 0.818 40 H 0.190 0.810 41 H 0.189 0.811 42 H 0.206 0.794 43 H 0.066 0.934 44 H 0.160 0.840 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.654 -5.003 18.056 18.924 hybrid contribution 0.108 0.725 -0.599 0.947 sum 2.761 -4.279 17.457 18.185 Atomic orbital electron populations 1.21724 0.95094 1.02154 1.01327 1.21441 0.96552 0.95016 1.02209 1.22028 0.96783 0.97346 1.00525 1.21103 0.92770 0.82907 0.99735 1.41331 1.72959 1.12076 0.99644 1.18442 1.37512 0.91433 0.87159 0.92789 1.26019 0.99393 0.97362 0.98957 1.69977 1.43185 1.05916 1.38245 0.85338 0.82061 0.76003 0.76480 1.22228 1.27185 1.18037 1.18340 0.86799 0.88121 0.86204 1.68019 1.37177 1.12093 1.07805 1.19387 0.93857 0.94658 0.90224 1.20999 0.98106 1.01051 0.96549 1.21401 0.98914 0.94695 0.93515 1.21376 0.91609 0.99974 1.01739 1.21454 1.02068 0.94259 0.90947 1.19067 0.92770 1.04440 0.99346 1.22480 1.00912 0.87049 0.89377 1.20641 0.93876 1.08622 0.98573 1.20785 0.82300 0.77918 0.84538 1.90927 1.82019 1.43143 1.21275 1.86466 1.18361 1.73409 1.49694 1.23481 0.90737 0.96832 0.94770 0.93333 0.93495 0.90870 0.91591 0.91403 0.93859 0.94189 0.92699 0.93155 0.92914 0.86100 0.81815 0.80962 0.81124 0.79420 0.93429 0.83994 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.11 -3.45 5.93 30.59 0.18 -3.27 16 3 C -0.13 -5.14 5.51 30.59 0.17 -4.97 16 4 C 0.16 7.02 5.38 86.38 0.46 7.48 16 5 N -0.54 -28.34 0.91 -516.92 -0.47 -28.82 16 6 C -0.22 -13.18 8.34 84.05 0.70 -12.48 16 7 H 0.05 3.63 8.06 -2.91 -0.02 3.61 16 8 C -0.02 -1.23 5.30 84.89 0.45 -0.78 16 9 N -0.93 -61.65 13.96 21.65 0.30 -61.35 16 10 Si 0.97 54.58 23.86 68.60 1.64 56.22 16 11 H -0.29 -16.29 5.45 99.48 0.54 -15.75 16 12 H -0.34 -19.64 7.11 99.48 0.71 -18.94 16 13 H -0.26 -14.34 6.73 99.48 0.67 -13.67 16 14 C 0.45 21.80 4.39 134.16 0.59 22.39 16 15 N -0.53 -25.31 5.69 -185.42 -1.06 -26.37 16 16 C 0.14 5.57 5.08 40.32 0.21 5.77 16 17 C -0.15 -4.81 9.97 22.36 0.22 -4.58 16 18 C -0.07 -1.43 9.94 22.04 0.22 -1.21 16 19 C -0.13 -2.29 9.96 22.05 0.22 -2.07 16 20 C -0.07 -1.45 9.77 22.35 0.22 -1.24 16 21 C -0.15 -4.95 5.74 -21.26 -0.12 -5.08 16 22 C 0.03 0.90 9.47 23.01 0.22 1.11 16 23 C -0.21 -8.99 5.90 -19.89 -0.12 -9.10 16 24 C 0.50 21.35 7.88 70.23 0.55 21.91 16 25 O -0.49 -24.34 13.41 19.78 0.27 -24.08 16 26 O -0.36 -11.83 9.86 -56.69 -0.56 -12.39 16 27 C 0.03 0.88 10.57 113.37 1.20 2.08 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 2.46 8.08 -2.39 -0.02 2.44 16 36 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 37 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 38 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 39 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.19 4.37 7.67 -2.91 -0.02 4.35 16 43 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -84.73 369.78 6.98 -77.76 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.78 Total: 6.18 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 6.08 Total: 12.84 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -1.22 Total: -116.53 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.29 Total: -36.47 kcal Atomic # 14 Polarization: 54.58 SS G_CDS: 1.64 Total: 56.22 kcal Total: -84.73 6.98 -77.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.951 kcal (2) G-P(sol) polarization free energy of solvation -84.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds