Wall clock time and date at job start Tue Mar 31 2020 16:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46854 * 2 1 4 4 C 1.53001 * 109.46854 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47227 * 179.97438 * 4 3 2 6 6 C 1.37098 * 119.99948 * 94.53602 * 5 4 3 7 7 H 1.07995 * 120.00150 * 214.24006 * 6 5 4 8 8 C 1.38956 * 119.99736 * 34.23968 * 6 5 4 9 9 N 1.31408 * 120.00209 * 22.25497 * 8 6 5 10 10 Si 1.86801 * 119.99615 * 202.24513 * 8 6 5 11 11 H 1.48500 * 109.46644 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.47500 * 300.00462 * 10 8 6 13 13 H 1.48505 * 109.46917 * 60.00756 * 10 8 6 14 14 C 1.34770 * 119.99976 * 274.53865 * 5 4 3 15 15 O 1.21294 * 120.00264 * 359.97438 * 14 5 4 16 16 C 1.50701 * 120.00001 * 179.97438 * 14 5 4 17 17 H 1.08999 * 115.55889 * 325.74780 * 16 14 5 18 18 C 1.53134 * 117.51621 * 111.57229 * 16 14 5 19 19 C 1.52336 * 59.82653 * 107.43846 * 18 16 14 20 20 C 1.50547 * 121.91451 * 111.23531 * 19 18 16 21 21 C 1.37688 * 133.32540 * 323.69756 * 20 19 18 22 22 C 1.38373 * 119.99013 * 179.97438 * 21 20 19 23 23 C 1.38302 * 119.83404 * 0.03018 * 22 21 20 24 24 C 1.37934 * 120.34625 * 0.02562 * 23 22 21 25 25 C 1.39091 * 105.97510 * 143.67753 * 20 19 18 26 26 N 1.39613 * 110.25003 * 0.02562 * 25 20 19 27 27 C 1.34602 * 112.21878 * 0.02562 * 26 25 20 28 28 O 1.21289 * 126.61820 * 180.02562 * 27 26 25 29 29 H 1.09005 * 109.46897 * 300.00041 * 1 2 3 30 30 H 1.08995 * 109.47292 * 59.99740 * 1 2 3 31 31 H 1.09003 * 109.47410 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47203 * 240.00233 * 2 1 3 33 33 H 1.09001 * 109.46810 * 119.99530 * 2 1 3 34 34 H 1.09005 * 109.47402 * 60.00268 * 3 2 1 35 35 H 1.08995 * 109.47383 * 300.00204 * 3 2 1 36 36 H 1.08998 * 109.47203 * 60.00233 * 4 3 2 37 37 H 1.09005 * 109.47270 * 299.99714 * 4 3 2 38 38 H 0.96996 * 120.00012 * 180.02562 * 9 8 6 39 39 H 1.09005 * 117.51662 * 214.88261 * 18 16 14 40 40 H 1.09003 * 117.51605 * 359.97438 * 18 16 14 41 41 H 1.07998 * 120.00184 * 359.95441 * 21 20 19 42 42 H 1.07994 * 120.08193 * 180.02562 * 22 21 20 43 43 H 1.07994 * 119.82792 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.90609 * 179.97438 * 24 23 22 45 45 H 0.96997 * 123.89517 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3759 3.4391 1.1820 7 1 4.2006 4.4977 1.3042 8 6 4.9232 2.7006 2.2241 9 7 5.5357 1.5652 1.9740 10 14 4.7886 3.3221 3.9805 11 1 5.4486 2.3590 4.8982 12 1 5.4542 4.6451 4.0900 13 1 3.3565 3.4565 4.3497 14 6 4.1954 3.4895 -1.1650 15 8 3.9149 2.9450 -2.2119 16 6 4.6972 4.9105 -1.1656 17 1 4.3944 5.5166 -0.3117 18 6 6.0826 5.1714 -1.7637 19 6 4.8304 5.6093 -2.5127 20 6 4.4788 7.0618 -2.6942 21 6 4.6151 8.1740 -1.8940 22 6 4.1873 9.4092 -2.3478 23 6 3.6228 9.5225 -3.6053 24 6 3.4834 8.4104 -4.4094 25 6 3.9131 7.1633 -3.9608 26 7 3.8819 5.9113 -4.5779 27 6 4.3998 4.9456 -3.7963 28 8 4.5020 3.7689 -4.0720 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9329 0.9289 -0.8909 37 1 3.9337 0.9286 0.8892 38 1 5.9174 1.0496 2.7014 39 1 6.6917 5.9491 -1.3030 40 1 6.6310 4.3150 -2.1562 41 1 5.0556 8.0821 -0.9122 42 1 4.2939 10.2825 -1.7216 43 1 3.2893 10.4866 -3.9595 44 1 3.0412 8.5070 -5.3900 45 1 3.5277 5.7553 -5.4673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179428647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:03 Heat of formation + Delta-G solvation = 0.086116 kcal Electronic energy + Delta-G solvation = -28349.327688 eV Core-core repulsion = 24526.071129 eV Total energy + Delta-G solvation = -3823.256559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.38698 -38.73493 -37.89556 -36.02319 -35.28053 -34.68311 -33.87693 -31.43747 -30.73840 -29.10283 -28.48686 -25.67975 -24.86889 -24.00167 -22.44567 -21.85085 -21.29868 -20.37233 -19.72209 -18.78603 -17.61369 -17.17386 -16.33285 -15.81681 -15.58389 -14.92263 -14.71287 -14.61233 -14.45281 -14.19041 -14.08129 -13.84104 -13.58060 -13.44363 -12.83029 -12.79877 -12.40003 -12.18456 -11.99196 -11.91983 -11.73656 -11.33953 -11.21930 -11.14093 -10.95577 -10.66938 -10.57900 -10.50187 -10.45482 -10.32437 -10.12530 -9.96169 -9.65093 -9.59786 -9.03374 -8.71394 -8.19231 -7.75662 -7.45154 -6.34519 -4.01061 1.24671 1.35180 2.80370 3.11862 3.21234 3.22933 3.23711 3.77368 3.86790 4.08358 4.38294 4.45554 4.60281 4.70999 4.95929 4.97749 5.03243 5.21683 5.33079 5.46469 5.50002 5.52860 5.59409 5.66697 5.71161 5.86294 5.96365 6.05221 6.11150 6.17369 6.26866 6.28312 6.41507 6.44313 6.45372 6.52294 6.55066 6.67608 6.75863 6.79078 6.90073 7.09009 7.18552 7.21044 7.39178 7.52967 7.96359 8.39270 8.55657 9.12063 9.57871 10.02785 10.66230 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011435 B = 0.004229 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.130717 B = 6619.775292 C = 7917.152631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.118 3.882 5 N -0.434 5.434 6 C -0.339 4.339 7 H 0.088 0.912 8 C 0.045 3.955 9 N -0.857 5.857 10 Si 0.910 3.090 11 H -0.284 1.284 12 H -0.272 1.272 13 H -0.273 1.273 14 C 0.481 3.519 15 O -0.564 6.564 16 C -0.091 4.091 17 H 0.128 0.872 18 C -0.098 4.098 19 C -0.138 4.138 20 C -0.098 4.098 21 C -0.066 4.066 22 C -0.148 4.148 23 C -0.090 4.090 24 C -0.151 4.151 25 C 0.157 3.843 26 N -0.672 5.672 27 C 0.553 3.447 28 O -0.431 6.431 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.269 0.731 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 11.851 -5.684 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.006 4.006 5 N -0.153 5.153 6 C -0.467 4.467 7 H 0.106 0.894 8 C -0.161 4.161 9 N -0.493 5.493 10 Si 0.736 3.264 11 H -0.209 1.209 12 H -0.198 1.198 13 H -0.199 1.199 14 C 0.268 3.732 15 O -0.447 6.447 16 C -0.112 4.112 17 H 0.146 0.854 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.101 4.101 21 C -0.084 4.084 22 C -0.168 4.168 23 C -0.109 4.109 24 C -0.172 4.172 25 C 0.059 3.941 26 N -0.317 5.317 27 C 0.338 3.662 28 O -0.298 6.298 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.968 10.563 -6.156 12.581 hybrid contribution -0.315 0.399 0.621 0.803 sum -3.283 10.962 -5.535 12.712 Atomic orbital electron populations 1.21756 0.96720 1.00617 1.01422 1.21424 0.94900 0.97817 1.01566 1.21901 0.98083 0.95409 1.01204 1.21407 0.90932 0.84703 1.03541 1.43380 1.55405 1.12017 1.04476 1.19346 1.41889 0.95279 0.90156 0.89427 1.25276 0.94281 0.96405 1.00179 1.69937 1.31287 1.15208 1.32896 0.86279 0.78717 0.78764 0.82602 1.20949 1.19761 1.19887 1.19486 0.82447 0.86845 0.84384 1.90768 1.54199 1.69324 1.30430 1.22064 1.00181 0.96973 0.92010 0.85420 1.22780 0.89084 1.02678 0.99093 1.20160 1.07796 0.91665 0.94609 1.19111 1.03243 0.93136 0.94579 1.20299 0.98259 0.90784 0.99105 1.20961 1.02034 0.97078 0.96681 1.20784 0.98452 0.97571 0.94059 1.20283 1.05723 0.89996 1.01226 1.18228 0.97119 0.86191 0.92599 1.43787 1.61786 1.06810 1.19284 1.19261 0.77427 0.84823 0.84655 1.90907 1.51202 1.12726 1.74942 0.93078 0.93142 0.93452 0.92420 0.92276 0.92450 0.93001 0.93047 0.87578 0.92040 0.87209 0.87337 0.85465 0.85636 0.85657 0.86023 0.75476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.12 -2.10 5.93 -26.73 -0.16 -2.26 16 3 C -0.13 -2.69 5.51 -26.73 -0.15 -2.84 16 4 C 0.12 2.87 4.92 -4.04 -0.02 2.85 16 5 N -0.43 -10.97 2.55 -114.81 -0.29 -11.26 16 6 C -0.34 -8.40 8.73 -14.93 -0.13 -8.53 16 7 H 0.09 2.05 6.51 -52.49 -0.34 1.71 16 8 C 0.04 1.10 4.93 -17.47 -0.09 1.01 16 9 N -0.86 -22.33 11.35 55.50 0.63 -21.70 16 10 Si 0.91 19.01 29.61 -169.99 -5.03 13.98 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 14 C 0.48 11.94 7.39 -10.99 -0.08 11.86 16 15 O -0.56 -15.40 12.01 -19.64 -0.24 -15.64 16 16 C -0.09 -1.84 5.18 -92.04 -0.48 -2.32 16 17 H 0.13 2.41 6.74 -51.93 -0.35 2.06 16 18 C -0.10 -1.74 9.99 -27.00 -0.27 -2.01 16 19 C -0.14 -2.51 2.42 -157.53 -0.38 -2.89 16 20 C -0.10 -1.47 6.12 -104.58 -0.64 -2.11 16 21 C -0.07 -0.82 10.03 -39.73 -0.40 -1.22 16 22 C -0.15 -1.53 10.07 -39.51 -0.40 -1.93 16 23 C -0.09 -0.88 10.02 -39.67 -0.40 -1.28 16 24 C -0.15 -1.67 10.07 -39.29 -0.40 -2.07 16 25 C 0.16 2.22 7.12 -83.60 -0.59 1.63 16 26 N -0.67 -10.36 5.90 -9.79 -0.06 -10.42 16 27 C 0.55 10.96 7.77 -11.02 -0.09 10.88 16 28 O -0.43 -10.33 14.47 -19.64 -0.28 -10.62 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 1.33 7.56 -51.93 -0.39 0.94 16 37 H 0.11 2.71 5.36 -51.93 -0.28 2.43 16 38 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16 41 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.41 5.13 8.96 -40.82 -0.37 4.77 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -31.68 372.23 -10.32 -41.99 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.36 Total: 11.13 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -4.29 Total: -3.06 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.28 Total: -43.39 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.52 Total: -26.26 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.68 -10.32 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179428647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.078 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds