Wall clock time and date at job start Tue Mar 31 2020 16:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46854 * 2 1 4 4 C 1.53001 * 109.46854 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47227 * 179.97438 * 4 3 2 6 6 C 1.37098 * 119.99948 * 94.53602 * 5 4 3 7 7 H 1.07995 * 120.00150 * 214.24006 * 6 5 4 8 8 C 1.38956 * 119.99736 * 34.23968 * 6 5 4 9 9 N 1.31408 * 120.00209 * 22.25497 * 8 6 5 10 10 Si 1.86801 * 119.99615 * 202.24513 * 8 6 5 11 11 H 1.48500 * 109.46644 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.47500 * 300.00462 * 10 8 6 13 13 H 1.48505 * 109.46917 * 60.00756 * 10 8 6 14 14 C 1.34770 * 119.99976 * 274.53865 * 5 4 3 15 15 O 1.21294 * 120.00264 * 359.97438 * 14 5 4 16 16 C 1.50701 * 120.00001 * 179.97438 * 14 5 4 17 17 H 1.08999 * 115.55889 * 325.74780 * 16 14 5 18 18 C 1.53134 * 117.51621 * 111.57229 * 16 14 5 19 19 C 1.52336 * 59.82653 * 107.43846 * 18 16 14 20 20 C 1.50547 * 121.91451 * 111.23531 * 19 18 16 21 21 C 1.37688 * 133.32540 * 323.69756 * 20 19 18 22 22 C 1.38373 * 119.99013 * 179.97438 * 21 20 19 23 23 C 1.38302 * 119.83404 * 0.03018 * 22 21 20 24 24 C 1.37934 * 120.34625 * 0.02562 * 23 22 21 25 25 C 1.39091 * 105.97510 * 143.67753 * 20 19 18 26 26 N 1.39613 * 110.25003 * 0.02562 * 25 20 19 27 27 C 1.34602 * 112.21878 * 0.02562 * 26 25 20 28 28 O 1.21289 * 126.61820 * 180.02562 * 27 26 25 29 29 H 1.09005 * 109.46897 * 300.00041 * 1 2 3 30 30 H 1.08995 * 109.47292 * 59.99740 * 1 2 3 31 31 H 1.09003 * 109.47410 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47203 * 240.00233 * 2 1 3 33 33 H 1.09001 * 109.46810 * 119.99530 * 2 1 3 34 34 H 1.09005 * 109.47402 * 60.00268 * 3 2 1 35 35 H 1.08995 * 109.47383 * 300.00204 * 3 2 1 36 36 H 1.08998 * 109.47203 * 60.00233 * 4 3 2 37 37 H 1.09005 * 109.47270 * 299.99714 * 4 3 2 38 38 H 0.96996 * 120.00012 * 180.02562 * 9 8 6 39 39 H 1.09005 * 117.51662 * 214.88261 * 18 16 14 40 40 H 1.09003 * 117.51605 * 359.97438 * 18 16 14 41 41 H 1.07998 * 120.00184 * 359.95441 * 21 20 19 42 42 H 1.07994 * 120.08193 * 180.02562 * 22 21 20 43 43 H 1.07994 * 119.82792 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.90609 * 179.97438 * 24 23 22 45 45 H 0.96997 * 123.89517 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3759 3.4391 1.1820 7 1 4.2006 4.4977 1.3042 8 6 4.9232 2.7006 2.2241 9 7 5.5357 1.5652 1.9740 10 14 4.7886 3.3221 3.9805 11 1 5.4486 2.3590 4.8982 12 1 5.4542 4.6451 4.0900 13 1 3.3565 3.4565 4.3497 14 6 4.1954 3.4895 -1.1650 15 8 3.9149 2.9450 -2.2119 16 6 4.6972 4.9105 -1.1656 17 1 4.3944 5.5166 -0.3117 18 6 6.0826 5.1714 -1.7637 19 6 4.8304 5.6093 -2.5127 20 6 4.4788 7.0618 -2.6942 21 6 4.6151 8.1740 -1.8940 22 6 4.1873 9.4092 -2.3478 23 6 3.6228 9.5225 -3.6053 24 6 3.4834 8.4104 -4.4094 25 6 3.9131 7.1633 -3.9608 26 7 3.8819 5.9113 -4.5779 27 6 4.3998 4.9456 -3.7963 28 8 4.5020 3.7689 -4.0720 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9329 0.9289 -0.8909 37 1 3.9337 0.9286 0.8892 38 1 5.9174 1.0496 2.7014 39 1 6.6917 5.9491 -1.3030 40 1 6.6310 4.3150 -2.1562 41 1 5.0556 8.0821 -0.9122 42 1 4.2939 10.2825 -1.7216 43 1 3.2893 10.4866 -3.9595 44 1 3.0412 8.5070 -5.3900 45 1 3.5277 5.7553 -5.4673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179428647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:02 Heat of formation + Delta-G solvation = -16.923733 kcal Electronic energy + Delta-G solvation = -28350.065290 eV Core-core repulsion = 24526.071129 eV Total energy + Delta-G solvation = -3823.994161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.66532 -40.44188 -39.23719 -37.63400 -36.68983 -36.27528 -35.54730 -33.35796 -31.71668 -30.27991 -29.97847 -27.04749 -26.71241 -25.59281 -23.44616 -23.43664 -22.40424 -21.98750 -21.26544 -20.49817 -18.85431 -18.65263 -17.99820 -17.33047 -16.80895 -16.51764 -16.32914 -16.26176 -15.96157 -15.73423 -15.32537 -15.06315 -14.96994 -14.73451 -14.30243 -14.14154 -13.83727 -13.75498 -13.59478 -13.25196 -13.07978 -12.93100 -12.87264 -12.65114 -12.18562 -12.12527 -12.09478 -12.00153 -11.90436 -11.84263 -11.64907 -11.47300 -11.36584 -11.14484 -10.92631 -10.06930 -9.65455 -9.41628 -8.89177 -8.24401 -5.97984 0.19942 0.45017 1.41267 1.47889 1.52707 1.60550 1.97358 2.06235 2.33663 2.74898 2.89335 3.01143 3.18733 3.34926 3.43547 3.59539 3.91222 4.03084 4.07833 4.12634 4.26691 4.27286 4.39514 4.48800 4.50917 4.56836 4.61364 4.65683 4.77169 4.79838 4.85802 4.95333 4.96785 5.06913 5.12032 5.14315 5.25657 5.32762 5.39786 5.47867 5.55181 5.56644 5.64678 5.72886 5.93833 6.05387 6.17252 6.47087 7.11863 7.22317 7.65196 8.11638 8.77845 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011435 B = 0.004229 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.130717 B = 6619.775292 C = 7917.152631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.120 3.880 5 N -0.447 5.447 6 C -0.353 4.353 7 H 0.102 0.898 8 C 0.003 3.997 9 N -0.894 5.894 10 Si 0.981 3.019 11 H -0.287 1.287 12 H -0.257 1.257 13 H -0.270 1.270 14 C 0.463 3.537 15 O -0.598 6.598 16 C -0.109 4.109 17 H 0.143 0.857 18 C -0.088 4.088 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.072 4.072 22 C -0.137 4.137 23 C -0.081 4.081 24 C -0.142 4.142 25 C 0.128 3.872 26 N -0.661 5.661 27 C 0.539 3.461 28 O -0.492 6.492 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.020 0.980 37 H 0.095 0.905 38 H 0.271 0.729 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.148 0.852 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 15.955 -4.534 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.004 4.004 5 N -0.165 5.165 6 C -0.480 4.480 7 H 0.119 0.881 8 C -0.199 4.199 9 N -0.531 5.531 10 Si 0.805 3.195 11 H -0.212 1.212 12 H -0.182 1.182 13 H -0.195 1.195 14 C 0.252 3.748 15 O -0.484 6.484 16 C -0.130 4.130 17 H 0.160 0.840 18 C -0.126 4.126 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.091 4.091 22 C -0.155 4.155 23 C -0.099 4.099 24 C -0.163 4.163 25 C 0.031 3.969 26 N -0.306 5.306 27 C 0.325 3.675 28 O -0.363 6.363 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.168 0.832 40 H 0.101 0.899 41 H 0.158 0.842 42 H 0.177 0.823 43 H 0.183 0.817 44 H 0.165 0.835 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.981 14.744 -5.015 16.075 hybrid contribution 0.007 -0.759 0.178 0.780 sum -3.974 13.985 -4.837 15.322 Atomic orbital electron populations 1.21703 0.94000 1.02421 1.01727 1.21410 0.97244 0.95127 1.01603 1.21747 0.95612 0.97739 1.00019 1.21331 0.93051 0.84726 1.01265 1.43673 1.55593 1.12128 1.05148 1.19743 1.42104 0.96100 0.90084 0.88069 1.26162 0.93398 0.96408 1.03966 1.70058 1.32283 1.16658 1.34120 0.85174 0.78712 0.78585 0.77054 1.21238 1.18168 1.19464 1.20316 0.81927 0.88795 0.83730 1.90752 1.55441 1.70709 1.31467 1.21901 1.02392 0.94515 0.94226 0.83988 1.22869 0.88554 1.02769 0.98406 1.20172 1.07024 0.93680 0.92603 1.19088 1.05452 0.91811 0.95936 1.20575 0.98348 0.90735 0.99402 1.21419 0.99921 0.97061 0.97141 1.21311 0.96630 0.98588 0.93396 1.20688 1.04297 0.88797 1.02516 1.18550 0.99164 0.86446 0.92728 1.43541 1.60802 1.06892 1.19376 1.19673 0.77269 0.84665 0.85846 1.90859 1.53938 1.15178 1.76374 0.92318 0.93300 0.90903 0.92926 0.91732 0.92474 0.94975 0.96134 0.88690 0.91967 0.83210 0.89934 0.84227 0.82287 0.81738 0.83457 0.74264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.36 16 2 C -0.12 -4.17 5.93 30.59 0.18 -3.99 16 3 C -0.11 -4.99 5.51 30.59 0.17 -4.82 16 4 C 0.12 6.25 4.92 86.38 0.42 6.67 16 5 N -0.45 -23.78 2.55 -635.52 -1.62 -25.40 16 6 C -0.35 -17.84 8.73 84.04 0.73 -17.10 16 7 H 0.10 4.71 6.51 -2.91 -0.02 4.69 16 8 C 0.00 0.17 4.93 84.93 0.42 0.58 16 9 N -0.89 -47.95 11.35 21.66 0.25 -47.71 16 10 Si 0.98 38.58 29.61 68.60 2.03 40.61 16 11 H -0.29 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 13 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 14 C 0.46 24.45 7.39 87.66 0.65 25.10 16 15 O -0.60 -35.35 12.01 21.01 0.25 -35.10 16 16 C -0.11 -4.57 5.18 -11.71 -0.06 -4.63 16 17 H 0.14 5.37 6.74 -2.39 -0.02 5.36 16 18 C -0.09 -3.20 9.99 30.42 0.30 -2.90 16 19 C -0.13 -4.87 2.42 -54.14 -0.13 -5.00 16 20 C -0.12 -3.47 6.12 -19.84 -0.12 -3.59 16 21 C -0.07 -1.57 10.03 22.17 0.22 -1.34 16 22 C -0.14 -2.12 10.07 22.32 0.22 -1.90 16 23 C -0.08 -1.15 10.02 22.21 0.22 -0.93 16 24 C -0.14 -2.63 10.07 22.46 0.23 -2.40 16 25 C 0.13 3.44 7.12 38.37 0.27 3.71 16 26 N -0.66 -20.82 5.90 -303.37 -1.79 -22.61 16 27 C 0.54 22.63 7.77 87.71 0.68 23.31 16 28 O -0.49 -25.60 14.47 21.03 0.30 -25.30 16 29 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.02 1.15 7.56 -2.39 -0.02 1.13 16 37 H 0.10 5.15 5.36 -2.38 -0.01 5.13 16 38 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 39 H 0.15 4.08 8.14 -2.38 -0.02 4.06 16 40 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.42 10.82 8.96 -92.71 -0.83 9.99 16 Total: -1.00 -75.36 372.23 4.74 -70.62 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 0.18 Total: 37.46 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.13 Total: 7.42 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -3.17 Total: -95.71 kcal Atomic # 8 Polarization: -60.95 SS G_CDS: 0.56 Total: -60.40 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -75.36 4.74 -70.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179428647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.698 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds