Wall clock time and date at job start Tue Mar 31 2020 16:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47061 * 2 1 4 4 C 1.52996 * 109.47080 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47083 * 180.02562 * 4 3 2 6 6 C 1.37095 * 119.99947 * 269.99918 * 5 4 3 7 7 H 1.08009 * 119.99773 * 145.35968 * 6 5 4 8 8 C 1.38950 * 120.00572 * 325.36136 * 6 5 4 9 9 N 1.31408 * 119.99744 * 337.27413 * 8 6 5 10 10 Si 1.86794 * 120.00132 * 157.27608 * 8 6 5 11 11 H 1.48505 * 109.47239 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47191 * 119.99979 * 10 8 6 13 13 H 1.48507 * 109.47003 * 239.99988 * 10 8 6 14 14 C 1.34778 * 119.99830 * 90.00440 * 5 4 3 15 15 O 1.21293 * 120.00108 * 4.90523 * 14 5 4 16 16 C 1.50696 * 120.00080 * 184.90314 * 14 5 4 17 17 N 1.46499 * 109.47394 * 185.37372 * 16 14 5 18 18 C 1.36532 * 118.86273 * 269.73326 * 17 16 14 19 19 C 1.34297 * 122.40740 * 179.69371 * 18 17 16 20 20 C 1.46368 * 119.41856 * 0.56784 * 19 18 17 21 21 C 1.39569 * 122.04247 * 179.68830 * 20 19 18 22 22 C 1.36727 * 119.49765 * 180.02562 * 21 20 19 23 23 C 1.38900 * 120.88300 * 0.03751 * 22 21 20 24 24 C 1.36753 * 120.88985 * 359.97438 * 23 22 21 25 25 C 1.39467 * 119.50276 * 359.97438 * 24 23 22 26 26 C 1.34787 * 118.85822 * 90.00360 * 17 16 14 27 27 O 1.21792 * 120.38632 * 359.97438 * 26 17 16 28 28 H 1.08991 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46823 * 299.99868 * 1 2 3 30 30 H 1.09006 * 109.47216 * 59.99572 * 1 2 3 31 31 H 1.09002 * 109.47391 * 240.00608 * 2 1 3 32 32 H 1.08996 * 109.47066 * 120.00315 * 2 1 3 33 33 H 1.09002 * 109.46521 * 60.00075 * 3 2 1 34 34 H 1.08996 * 109.47438 * 300.00087 * 3 2 1 35 35 H 1.09007 * 109.46799 * 60.00451 * 4 3 2 36 36 H 1.08996 * 109.47293 * 300.00466 * 4 3 2 37 37 H 0.97001 * 120.00184 * 180.40409 * 9 8 6 38 38 H 1.09003 * 109.47432 * 305.37815 * 16 14 5 39 39 H 1.09005 * 109.47158 * 65.37682 * 16 14 5 40 40 H 1.08003 * 118.79581 * 359.97438 * 18 17 16 41 41 H 1.08002 * 120.28575 * 180.31406 * 19 18 17 42 42 H 1.08003 * 120.25063 * 0.02562 * 21 20 19 43 43 H 1.07988 * 119.55741 * 180.02562 * 22 21 20 44 44 H 1.07993 * 119.55541 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.24560 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2873 3.4704 -1.1857 7 1 4.0982 4.5306 -1.2684 8 6 4.7626 2.7620 -2.2825 9 7 5.4054 1.6297 -2.1049 10 14 4.4880 3.4192 -4.0093 11 1 3.7428 4.7017 -3.9382 12 1 5.7998 3.6442 -4.6677 13 1 3.7024 2.4337 -4.7949 14 6 4.2825 3.4587 1.1688 15 8 4.1658 2.8598 2.2170 16 6 4.6783 4.9128 1.1718 17 7 4.9869 5.3321 2.5412 18 6 3.9837 5.8366 3.3179 19 6 4.1855 6.2366 4.5839 20 6 5.5273 6.1454 5.1615 21 6 5.7999 6.5512 6.4688 22 6 7.0730 6.4434 6.9555 23 6 8.0975 5.9364 6.1663 24 6 7.8596 5.5313 4.8820 25 6 6.5704 5.6285 4.3589 26 6 6.2525 5.2115 2.9889 27 8 7.1218 4.7608 2.2647 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9337 0.9286 -0.8892 36 1 3.9330 0.9288 0.8908 37 1 5.7424 1.1380 -2.8702 38 1 5.5574 5.0514 0.5425 39 1 3.8557 5.5141 0.7845 40 1 2.9906 5.9127 2.9002 41 1 3.3657 6.6260 5.1693 42 1 5.0112 6.9475 7.0911 43 1 7.2850 6.7568 7.9670 44 1 9.0953 5.8611 6.5725 45 1 8.6638 5.1383 4.2778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182761252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:06 Heat of formation + Delta-G solvation = -30.753149 kcal Electronic energy + Delta-G solvation = -27875.285277 eV Core-core repulsion = 24050.691427 eV Total energy + Delta-G solvation = -3824.593850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.94307 -38.84996 -37.93868 -36.49144 -35.33147 -33.98884 -32.70026 -31.59410 -31.22661 -29.35298 -28.81990 -27.09964 -24.98827 -23.78866 -23.54521 -22.37684 -21.51335 -20.49144 -19.30348 -18.20833 -17.68776 -17.36685 -16.68212 -15.93297 -15.12065 -14.98551 -14.92465 -14.82094 -14.66285 -14.27377 -14.07500 -13.95629 -13.73741 -13.28349 -12.97349 -12.85830 -12.53034 -12.48908 -12.28270 -12.03607 -11.59918 -11.55363 -11.53913 -11.30902 -11.25411 -10.99074 -10.90077 -10.61311 -10.53926 -10.37579 -10.29225 -9.78318 -9.68950 -9.49714 -9.18231 -8.98270 -8.52110 -7.60382 -7.44032 -6.44606 -4.14149 0.91712 1.08590 2.39753 2.91832 3.05693 3.17439 3.18274 3.20297 3.73896 4.03889 4.18309 4.62436 4.68800 4.73210 4.86621 4.91462 4.96346 5.20533 5.32168 5.40499 5.44307 5.45966 5.57761 5.62838 5.76709 5.92384 5.96449 5.99335 6.03437 6.06044 6.15412 6.21057 6.32900 6.35928 6.42556 6.49110 6.51866 6.54919 6.68293 6.77181 6.77829 6.95967 7.07045 7.27966 7.43508 7.52328 7.83946 8.24624 8.30608 8.97385 9.38432 9.82255 10.55720 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003502 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.592095 B = 7992.820452 C = 9135.826540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.125 4.125 4 C 0.111 3.889 5 N -0.429 5.429 6 C -0.352 4.352 7 H 0.091 0.909 8 C 0.049 3.951 9 N -0.848 5.848 10 Si 0.913 3.087 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.455 3.545 15 O -0.596 6.596 16 C 0.090 3.910 17 N -0.498 5.498 18 C 0.148 3.852 19 C -0.232 4.232 20 C 0.016 3.984 21 C -0.133 4.133 22 C -0.088 4.088 23 C -0.150 4.150 24 C -0.046 4.046 25 C -0.151 4.151 26 C 0.547 3.453 27 O -0.517 6.517 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.271 0.729 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 8.175 9.976 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.164 4.164 4 C -0.013 4.013 5 N -0.147 5.147 6 C -0.479 4.479 7 H 0.109 0.891 8 C -0.159 4.159 9 N -0.484 5.484 10 Si 0.739 3.261 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.204 1.204 14 C 0.242 3.758 15 O -0.482 6.482 16 C -0.034 4.034 17 N -0.211 5.211 18 C 0.025 3.975 19 C -0.256 4.256 20 C 0.014 3.986 21 C -0.151 4.151 22 C -0.106 4.106 23 C -0.168 4.168 24 C -0.065 4.065 25 C -0.154 4.154 26 C 0.341 3.659 27 O -0.394 6.394 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.247 7.400 9.828 12.724 hybrid contribution -0.231 0.181 -0.982 1.025 sum -3.479 7.581 8.846 12.158 Atomic orbital electron populations 1.21753 0.96583 1.00733 1.01440 1.21433 0.94997 0.97707 1.01685 1.21879 0.97732 0.95551 1.01196 1.21484 0.91192 0.84721 1.03896 1.43395 1.55016 1.12148 1.04168 1.19417 1.45759 0.95047 0.87707 0.89128 1.25325 0.93898 0.96290 1.00374 1.69947 1.30537 1.16178 1.31722 0.86109 0.78409 0.79276 0.82321 1.19066 1.20599 1.20392 1.20361 0.81599 0.88996 0.84823 1.90566 1.57663 1.68018 1.31964 1.21685 1.04632 0.96109 0.80983 1.44806 1.08339 1.53502 1.14473 1.21424 0.92718 0.91630 0.91697 1.21257 0.96094 1.13139 0.95061 1.19116 0.92598 0.93544 0.93352 1.20800 0.97209 1.02543 0.94573 1.20975 0.92973 0.97172 0.99514 1.20818 0.99586 1.02100 0.94294 1.20828 0.95381 0.95136 0.95174 1.19907 0.95131 1.06320 0.94079 1.18088 0.81617 0.78763 0.87419 1.90893 1.46046 1.44564 1.57877 0.93385 0.93119 0.93011 0.92170 0.92415 0.93233 0.92139 0.87391 0.92744 0.91873 0.85932 0.87763 0.82976 0.83867 0.85365 0.85925 0.85745 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.12 -2.47 5.54 -26.73 -0.15 -2.62 16 4 C 0.11 2.63 5.04 -4.04 -0.02 2.60 16 5 N -0.43 -10.65 2.54 -114.81 -0.29 -10.94 16 6 C -0.35 -8.62 8.58 -14.93 -0.13 -8.75 16 7 H 0.09 2.05 7.16 -52.48 -0.38 1.68 16 8 C 0.05 1.20 4.95 -17.47 -0.09 1.11 16 9 N -0.85 -22.30 11.34 55.50 0.63 -21.67 16 10 Si 0.91 18.89 29.61 -169.99 -5.03 13.85 16 11 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 14 C 0.46 11.06 7.68 -10.99 -0.08 10.97 16 15 O -0.60 -15.98 15.97 5.55 0.09 -15.89 16 16 C 0.09 1.81 4.35 -5.20 -0.02 1.79 16 17 N -0.50 -9.39 2.11 -119.03 -0.25 -9.64 16 18 C 0.15 2.20 10.14 -16.85 -0.17 2.03 16 19 C -0.23 -3.08 10.03 -37.70 -0.38 -3.46 16 20 C 0.02 0.23 5.89 -104.93 -0.62 -0.39 16 21 C -0.13 -1.55 9.83 -39.63 -0.39 -1.94 16 22 C -0.09 -0.95 9.96 -39.88 -0.40 -1.35 16 23 C -0.15 -1.80 9.96 -39.87 -0.40 -2.19 16 24 C -0.05 -0.71 9.62 -39.66 -0.38 -1.09 16 25 C -0.15 -2.63 5.90 -104.82 -0.62 -3.24 16 26 C 0.55 11.31 7.61 -12.84 -0.10 11.21 16 27 O -0.52 -12.44 16.06 5.11 0.08 -12.36 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.11 2.73 5.36 -51.93 -0.28 2.45 16 36 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.12 2.65 7.07 -51.93 -0.37 2.28 16 39 H 0.10 1.69 7.84 -51.93 -0.41 1.28 16 40 H 0.15 1.79 7.98 -52.48 -0.42 1.38 16 41 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.13 2.04 7.80 -52.49 -0.41 1.63 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -32.54 377.97 -9.23 -41.78 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.42 Total: 8.33 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -3.73 Total: 0.85 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.09 Total: -42.25 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: 0.17 Total: -28.25 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.54 -9.23 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182761252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.023 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds