Wall clock time and date at job start Tue Mar 31 2020 16:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47061 * 2 1 4 4 C 1.52996 * 109.47080 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47083 * 180.02562 * 4 3 2 6 6 C 1.37095 * 119.99947 * 269.99918 * 5 4 3 7 7 H 1.08009 * 119.99773 * 145.35968 * 6 5 4 8 8 C 1.38950 * 120.00572 * 325.36136 * 6 5 4 9 9 N 1.31408 * 119.99744 * 337.27413 * 8 6 5 10 10 Si 1.86794 * 120.00132 * 157.27608 * 8 6 5 11 11 H 1.48505 * 109.47239 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47191 * 119.99979 * 10 8 6 13 13 H 1.48507 * 109.47003 * 239.99988 * 10 8 6 14 14 C 1.34778 * 119.99830 * 90.00440 * 5 4 3 15 15 O 1.21293 * 120.00108 * 4.90523 * 14 5 4 16 16 C 1.50696 * 120.00080 * 184.90314 * 14 5 4 17 17 N 1.46499 * 109.47394 * 185.37372 * 16 14 5 18 18 C 1.36532 * 118.86273 * 269.73326 * 17 16 14 19 19 C 1.34297 * 122.40740 * 179.69371 * 18 17 16 20 20 C 1.46368 * 119.41856 * 0.56784 * 19 18 17 21 21 C 1.39569 * 122.04247 * 179.68830 * 20 19 18 22 22 C 1.36727 * 119.49765 * 180.02562 * 21 20 19 23 23 C 1.38900 * 120.88300 * 0.03751 * 22 21 20 24 24 C 1.36753 * 120.88985 * 359.97438 * 23 22 21 25 25 C 1.39467 * 119.50276 * 359.97438 * 24 23 22 26 26 C 1.34787 * 118.85822 * 90.00360 * 17 16 14 27 27 O 1.21792 * 120.38632 * 359.97438 * 26 17 16 28 28 H 1.08991 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46823 * 299.99868 * 1 2 3 30 30 H 1.09006 * 109.47216 * 59.99572 * 1 2 3 31 31 H 1.09002 * 109.47391 * 240.00608 * 2 1 3 32 32 H 1.08996 * 109.47066 * 120.00315 * 2 1 3 33 33 H 1.09002 * 109.46521 * 60.00075 * 3 2 1 34 34 H 1.08996 * 109.47438 * 300.00087 * 3 2 1 35 35 H 1.09007 * 109.46799 * 60.00451 * 4 3 2 36 36 H 1.08996 * 109.47293 * 300.00466 * 4 3 2 37 37 H 0.97001 * 120.00184 * 180.40409 * 9 8 6 38 38 H 1.09003 * 109.47432 * 305.37815 * 16 14 5 39 39 H 1.09005 * 109.47158 * 65.37682 * 16 14 5 40 40 H 1.08003 * 118.79581 * 359.97438 * 18 17 16 41 41 H 1.08002 * 120.28575 * 180.31406 * 19 18 17 42 42 H 1.08003 * 120.25063 * 0.02562 * 21 20 19 43 43 H 1.07988 * 119.55741 * 180.02562 * 22 21 20 44 44 H 1.07993 * 119.55541 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.24560 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2873 3.4704 -1.1857 7 1 4.0982 4.5306 -1.2684 8 6 4.7626 2.7620 -2.2825 9 7 5.4054 1.6297 -2.1049 10 14 4.4880 3.4192 -4.0093 11 1 3.7428 4.7017 -3.9382 12 1 5.7998 3.6442 -4.6677 13 1 3.7024 2.4337 -4.7949 14 6 4.2825 3.4587 1.1688 15 8 4.1658 2.8598 2.2170 16 6 4.6783 4.9128 1.1718 17 7 4.9869 5.3321 2.5412 18 6 3.9837 5.8366 3.3179 19 6 4.1855 6.2366 4.5839 20 6 5.5273 6.1454 5.1615 21 6 5.7999 6.5512 6.4688 22 6 7.0730 6.4434 6.9555 23 6 8.0975 5.9364 6.1663 24 6 7.8596 5.5313 4.8820 25 6 6.5704 5.6285 4.3589 26 6 6.2525 5.2115 2.9889 27 8 7.1218 4.7608 2.2647 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9337 0.9286 -0.8892 36 1 3.9330 0.9288 0.8908 37 1 5.7424 1.1380 -2.8702 38 1 5.5574 5.0514 0.5425 39 1 3.8557 5.5141 0.7845 40 1 2.9906 5.9127 2.9002 41 1 3.3657 6.6260 5.1693 42 1 5.0112 6.9475 7.0911 43 1 7.2850 6.7568 7.9670 44 1 9.0953 5.8611 6.5725 45 1 8.6638 5.1383 4.2778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182761252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:05 Heat of formation + Delta-G solvation = -48.609226 kcal Electronic energy + Delta-G solvation = -27876.059574 eV Core-core repulsion = 24050.691427 eV Total energy + Delta-G solvation = -3825.368147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.29915 -40.50905 -39.28907 -37.95469 -37.10214 -35.59990 -33.95288 -33.49270 -32.32007 -30.70777 -30.15204 -28.60812 -26.87413 -25.10001 -24.71208 -23.82454 -22.65697 -22.00100 -21.19264 -19.49683 -19.05049 -18.80179 -18.31224 -17.61499 -16.66315 -16.52748 -16.34591 -16.15337 -16.10758 -15.76203 -15.71009 -15.37443 -14.85351 -14.66417 -14.51630 -14.12981 -13.85153 -13.70639 -13.66571 -13.52091 -13.18552 -13.13638 -12.94263 -12.77057 -12.66751 -12.61027 -12.14745 -12.04375 -11.99780 -11.98329 -11.84859 -11.45695 -11.17373 -11.11002 -10.76870 -10.29372 -10.01645 -9.54937 -8.66229 -8.34566 -6.10881 -0.21296 0.01087 1.22840 1.37203 1.46694 1.56209 1.60443 1.88197 1.97849 2.29516 2.87020 2.99903 3.10206 3.44624 3.68984 3.83968 3.95981 4.04611 4.09134 4.10024 4.14756 4.25744 4.32400 4.38388 4.42430 4.46123 4.54081 4.72129 4.80820 4.84209 4.91204 4.94120 4.96926 5.03865 5.05440 5.16288 5.29743 5.33848 5.40321 5.41940 5.48985 5.50484 5.53936 5.67247 5.93919 5.98409 6.19659 6.33666 6.85302 7.04442 7.46711 7.90755 8.67484 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003502 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.592095 B = 7992.820452 C = 9135.826540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.109 4.109 4 C 0.111 3.889 5 N -0.441 5.441 6 C -0.365 4.365 7 H 0.109 0.891 8 C 0.003 3.997 9 N -0.891 5.891 10 Si 0.985 3.015 11 H -0.248 1.248 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.442 3.558 15 O -0.630 6.630 16 C 0.102 3.898 17 N -0.501 5.501 18 C 0.106 3.894 19 C -0.202 4.202 20 C -0.006 4.006 21 C -0.121 4.121 22 C -0.078 4.078 23 C -0.137 4.137 24 C -0.077 4.077 25 C -0.185 4.185 26 C 0.525 3.475 27 O -0.581 6.581 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.024 0.976 37 H 0.273 0.727 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.183 0.817 41 H 0.191 0.809 42 H 0.170 0.830 43 H 0.169 0.831 44 H 0.154 0.846 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 10.562 12.102 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.148 4.148 4 C -0.012 4.012 5 N -0.158 5.158 6 C -0.492 4.492 7 H 0.127 0.873 8 C -0.201 4.201 9 N -0.528 5.528 10 Si 0.808 3.192 11 H -0.171 1.171 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.231 3.769 15 O -0.519 6.519 16 C -0.023 4.023 17 N -0.214 5.214 18 C -0.013 4.013 19 C -0.225 4.225 20 C -0.007 4.007 21 C -0.139 4.139 22 C -0.096 4.096 23 C -0.155 4.155 24 C -0.097 4.097 25 C -0.188 4.188 26 C 0.323 3.677 27 O -0.464 6.464 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.162 0.838 40 H 0.200 0.800 41 H 0.208 0.792 42 H 0.188 0.812 43 H 0.187 0.813 44 H 0.172 0.828 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.686 9.825 11.985 16.508 hybrid contribution 0.611 -0.538 -1.405 1.624 sum -5.076 9.286 10.580 14.964 Atomic orbital electron populations 1.21696 0.93714 1.02379 1.02006 1.21425 0.97441 0.95263 1.01468 1.21723 0.94465 0.97789 1.00803 1.21449 0.93967 0.84380 1.01441 1.43700 1.54987 1.12396 1.04721 1.19900 1.45661 0.96018 0.87606 0.87347 1.26284 0.93140 0.96393 1.04273 1.70071 1.31912 1.17873 1.32919 0.85008 0.78007 0.79330 0.76832 1.17100 1.21164 1.20030 1.21098 0.80892 0.90754 0.84196 1.90516 1.59071 1.69278 1.32996 1.21497 1.04636 0.93891 0.82277 1.44799 1.08733 1.53591 1.14285 1.22038 0.93076 0.93513 0.92718 1.21883 0.96596 1.09685 0.94288 1.19511 0.92477 0.94054 0.94698 1.21314 0.98816 1.00616 0.93167 1.21532 0.92016 0.94933 1.01075 1.21220 1.01702 0.99993 0.92623 1.20903 0.94536 0.97249 0.96966 1.20009 0.97093 1.08761 0.92967 1.18846 0.81786 0.78414 0.88685 1.90824 1.47835 1.48085 1.59646 0.91230 0.92672 0.92321 0.92293 0.92836 0.93816 0.92000 0.89022 0.95769 0.91778 0.88352 0.83759 0.80004 0.79239 0.81208 0.81346 0.82818 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.91 71.98 0.71 -2.91 16 2 C -0.12 -3.92 5.93 30.60 0.18 -3.74 16 3 C -0.11 -4.42 5.54 30.60 0.17 -4.26 16 4 C 0.11 5.59 5.04 86.38 0.44 6.03 16 5 N -0.44 -22.90 2.54 -635.54 -1.61 -24.51 16 6 C -0.36 -18.35 8.58 84.04 0.72 -17.62 16 7 H 0.11 4.93 7.16 -2.91 -0.02 4.91 16 8 C 0.00 0.13 4.95 84.93 0.42 0.55 16 9 N -0.89 -48.94 11.34 21.66 0.25 -48.70 16 10 Si 0.99 39.03 29.61 68.60 2.03 41.06 16 11 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 12 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 14 C 0.44 22.62 7.68 87.66 0.67 23.29 16 15 O -0.63 -35.73 15.97 -3.07 -0.05 -35.78 16 16 C 0.10 4.28 4.35 85.63 0.37 4.65 16 17 N -0.50 -19.71 2.11 -648.66 -1.37 -21.07 16 18 C 0.11 3.06 10.14 83.06 0.84 3.90 16 19 C -0.20 -4.81 10.03 23.49 0.24 -4.58 16 20 C -0.01 -0.15 5.89 -20.06 -0.12 -0.27 16 21 C -0.12 -2.27 9.83 22.24 0.22 -2.06 16 22 C -0.08 -1.31 9.96 22.07 0.22 -1.09 16 23 C -0.14 -3.00 9.96 22.08 0.22 -2.78 16 24 C -0.08 -2.47 9.62 22.22 0.21 -2.26 16 25 C -0.19 -6.68 5.90 -19.99 -0.12 -6.80 16 26 C 0.53 23.43 7.61 86.45 0.66 24.09 16 27 O -0.58 -31.06 16.06 -4.64 -0.07 -31.14 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.09 4.92 5.36 -2.38 -0.01 4.90 16 36 H 0.02 1.31 7.36 -2.39 -0.02 1.29 16 37 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.10 4.59 7.07 -2.39 -0.02 4.57 16 39 H 0.14 4.68 7.84 -2.38 -0.02 4.66 16 40 H 0.18 3.93 7.98 -2.91 -0.02 3.91 16 41 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 43 H 0.17 1.40 8.06 -2.92 -0.02 1.37 16 44 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.11 3.91 7.80 -2.91 -0.02 3.89 16 Total: -1.00 -79.54 377.97 6.22 -73.32 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.99 Total: 32.67 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 6.06 Total: 14.14 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -2.74 Total: -94.28 kcal Atomic # 8 Polarization: -66.79 SS G_CDS: -0.12 Total: -66.91 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -79.54 6.22 -73.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182761252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.713 kcal (2) G-P(sol) polarization free energy of solvation -79.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds