Wall clock time and date at job start Tue Mar 31 2020 16:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47521 * 2 1 4 4 C 1.52998 * 109.47791 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47497 * 180.02562 * 4 3 2 6 6 C 1.35099 * 120.00047 * 274.35971 * 5 4 3 7 7 H 1.07992 * 120.00242 * 131.15250 * 6 5 4 8 8 C 1.40018 * 119.99568 * 311.15841 * 6 5 4 9 9 N 1.30758 * 120.00129 * 3.45972 * 8 6 5 10 10 Si 1.86803 * 119.99764 * 183.45916 * 8 6 5 11 11 H 1.48499 * 109.47194 * 60.00033 * 10 8 6 12 12 H 1.48494 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46856 * 300.00132 * 10 8 6 14 14 C 1.34773 * 120.00312 * 94.35927 * 5 4 3 15 15 O 1.21599 * 119.99795 * 4.15669 * 14 5 4 16 16 C 1.48028 * 120.00259 * 184.15424 * 14 5 4 17 17 O 1.20822 * 119.99831 * 354.21520 * 16 14 5 18 18 C 1.50706 * 120.00189 * 174.49567 * 16 14 5 19 19 C 1.50699 * 109.46960 * 179.72601 * 18 16 14 20 20 C 1.34241 * 126.49760 * 264.68079 * 19 18 16 21 21 N 1.36835 * 109.92787 * 179.83656 * 20 19 18 22 22 H 0.97001 * 125.05927 * 180.18582 * 21 20 19 23 23 C 1.37686 * 109.87190 * 0.44671 * 21 20 19 24 24 C 1.39126 * 133.50472 * 179.71338 * 23 21 20 25 25 C 1.37754 * 119.77756 * 180.02562 * 24 23 21 26 26 C 1.38836 * 120.66651 * 359.97438 * 25 24 23 27 27 C 1.36628 * 120.52696 * 0.02562 * 26 25 24 28 28 C 1.39635 * 119.76412 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47453 * 300.00224 * 1 2 3 30 30 H 1.09005 * 109.47038 * 59.99603 * 1 2 3 31 31 H 1.08994 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47453 * 239.99776 * 2 1 3 33 33 H 1.09004 * 109.46892 * 119.99629 * 2 1 3 34 34 H 1.09004 * 109.46940 * 59.99461 * 3 2 1 35 35 H 1.09005 * 109.47288 * 300.00244 * 3 2 1 36 36 H 1.09009 * 109.46780 * 59.99559 * 4 3 2 37 37 H 1.09002 * 109.46645 * 300.00274 * 4 3 2 38 38 H 0.97001 * 119.99645 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.46283 * 299.72062 * 18 16 14 40 40 H 1.08998 * 109.46872 * 59.71917 * 18 16 14 41 41 H 1.07995 * 125.03790 * 359.97438 * 20 19 18 42 42 H 1.07994 * 120.11318 * 0.02562 * 24 23 21 43 43 H 1.07997 * 119.66633 * 180.02562 * 25 24 23 44 44 H 1.07991 * 119.73599 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.11519 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2002 3.4905 -1.1651 7 1 3.7944 4.4857 -1.2709 8 6 4.8731 2.8912 -2.2367 9 7 5.3050 1.6614 -2.1321 10 14 5.1539 3.8485 -3.8160 11 1 5.9564 5.0631 -3.5226 12 1 5.8844 2.9963 -4.7883 13 1 3.8448 4.2475 -4.3924 14 6 4.3661 3.4291 1.1653 15 8 4.3110 2.8058 2.2080 16 6 4.7714 4.8528 1.1746 17 8 4.9277 5.4432 0.1322 18 6 4.9953 5.5640 2.4843 19 6 5.4038 6.9900 2.2181 20 6 6.6585 7.4637 2.1611 21 7 6.6387 8.8059 1.8955 22 1 7.4243 9.3676 1.8048 23 6 5.3374 9.2413 1.7819 24 6 4.7613 10.4823 1.5295 25 6 3.3900 10.6016 1.4757 26 6 2.5746 9.4949 1.6704 27 6 3.1193 8.2669 1.9195 28 6 4.5070 8.1231 1.9784 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9337 0.9285 -0.8892 37 1 3.9329 0.9288 0.8909 38 1 5.7715 1.2464 -2.8744 39 1 4.0736 5.5527 3.0660 40 1 5.7834 5.0583 3.0423 41 1 7.5514 6.8727 2.3017 42 1 5.3870 11.3490 1.3764 43 1 2.9447 11.5657 1.2794 44 1 1.5014 9.6056 1.6246 45 1 2.4788 7.4106 2.0703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183097000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:10 Heat of formation + Delta-G solvation = -11.466212 kcal Electronic energy + Delta-G solvation = -27758.404731 eV Core-core repulsion = 23934.647226 eV Total energy + Delta-G solvation = -3823.757505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.13089 -39.33743 -37.27837 -36.71867 -35.40298 -33.98116 -32.76215 -31.56689 -30.08510 -29.14224 -28.58131 -27.27808 -24.96410 -24.02964 -22.71357 -21.65994 -21.62844 -20.34561 -19.36278 -18.71565 -17.62263 -17.28608 -16.25687 -15.75041 -15.35949 -15.05941 -14.77996 -14.62265 -14.47001 -14.20487 -13.92084 -13.69358 -13.59052 -13.42442 -13.17084 -12.79644 -12.34176 -12.17136 -12.15566 -11.97732 -11.63467 -11.53734 -11.40922 -11.25299 -11.08358 -11.05463 -10.63862 -10.57539 -10.48492 -10.39861 -10.26603 -9.78847 -9.67891 -9.47062 -9.08082 -8.09829 -8.05754 -7.49424 -7.36009 -6.32523 -4.11720 1.27611 1.77878 2.27480 2.82315 3.20135 3.22431 3.24776 3.29853 4.02991 4.11619 4.31267 4.46676 4.85346 4.95562 4.99447 5.10814 5.23817 5.39653 5.46546 5.50605 5.51134 5.68103 5.69105 5.79110 5.87594 5.92973 6.04702 6.09513 6.12558 6.25799 6.26725 6.34487 6.39467 6.43172 6.60427 6.61147 6.74200 6.75158 6.84767 6.86010 6.96706 7.13735 7.30880 7.36849 7.62299 7.65327 7.97778 8.15464 8.55186 9.03068 9.39656 9.85500 10.61174 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.003763 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.765659 B = 7439.522117 C = 8252.845224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.124 4.124 4 C 0.091 3.909 5 N -0.387 5.387 6 C -0.325 4.325 7 H 0.102 0.898 8 C 0.050 3.950 9 N -0.862 5.862 10 Si 0.921 3.079 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.413 3.587 15 O -0.598 6.598 16 C 0.340 3.660 17 O -0.400 6.400 18 C -0.078 4.078 19 C -0.148 4.148 20 C 0.055 3.945 21 N -0.597 5.597 22 H 0.413 0.587 23 C 0.095 3.905 24 C -0.135 4.135 25 C -0.103 4.103 26 C -0.151 4.151 27 C -0.064 4.064 28 C -0.091 4.091 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.121 0.879 37 H 0.057 0.943 38 H 0.273 0.727 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.169 0.831 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 10.386 5.812 11.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.162 4.162 4 C -0.031 4.031 5 N -0.105 5.105 6 C -0.455 4.455 7 H 0.119 0.881 8 C -0.157 4.157 9 N -0.498 5.498 10 Si 0.747 3.253 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.202 3.798 15 O -0.485 6.485 16 C 0.209 3.791 17 O -0.268 6.268 18 C -0.116 4.116 19 C -0.155 4.155 20 C -0.070 4.070 21 N -0.199 5.199 22 H 0.249 0.751 23 C -0.012 4.012 24 C -0.155 4.155 25 C -0.122 4.122 26 C -0.171 4.171 27 C -0.082 4.082 28 C -0.096 4.096 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.139 0.861 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.186 0.814 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.079 10.296 5.582 11.761 hybrid contribution 0.628 0.604 -0.936 1.279 sum -0.451 10.900 4.647 11.858 Atomic orbital electron populations 1.21758 0.96661 1.00670 1.01475 1.21420 0.94919 0.97645 1.01688 1.21846 0.97533 0.95583 1.01244 1.21892 0.91492 0.85181 1.04570 1.43035 1.50494 1.11883 1.05049 1.19613 1.35019 1.01335 0.89535 0.88069 1.25700 0.94470 0.95423 1.00067 1.69348 1.35311 1.12239 1.32943 0.86082 0.79018 0.79776 0.80378 1.19350 1.20968 1.19647 1.20631 0.84147 0.89758 0.85300 1.90613 1.58891 1.66748 1.32282 1.24201 0.75940 0.88703 0.90230 1.90405 1.34719 1.67112 1.34602 1.20184 1.03986 0.89894 0.97580 1.19925 0.91638 0.93893 1.10024 1.21565 0.98738 0.83264 1.03450 1.41638 1.06069 1.08593 1.63633 0.75069 1.18230 0.84089 0.95111 1.03730 1.19947 0.95016 0.94014 1.06562 1.20732 0.92426 0.98569 1.00517 1.20576 0.99555 0.92684 1.04259 1.20315 0.92823 0.97430 0.97664 1.19055 0.93060 0.92449 1.05026 0.93135 0.93006 0.93421 0.92074 0.92429 0.93367 0.92067 0.86118 0.92456 0.91625 0.88122 0.87945 0.81372 0.86661 0.86140 0.86272 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.15 0.37 -1.72 16 2 C -0.12 -1.98 5.93 -26.74 -0.16 -2.14 16 3 C -0.12 -2.51 5.51 -26.73 -0.15 -2.66 16 4 C 0.09 2.17 5.12 -4.05 -0.02 2.15 16 5 N -0.39 -9.96 2.46 -116.02 -0.28 -10.25 16 6 C -0.33 -8.60 7.48 -15.45 -0.12 -8.72 16 7 H 0.10 2.74 6.30 -52.49 -0.33 2.41 16 8 C 0.05 1.31 5.40 -17.34 -0.09 1.21 16 9 N -0.86 -22.70 10.90 55.55 0.61 -22.10 16 10 Si 0.92 20.67 29.56 -169.99 -5.03 15.64 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 14 C 0.41 10.28 7.63 -12.25 -0.09 10.19 16 15 O -0.60 -15.40 16.16 5.28 0.09 -15.31 16 16 C 0.34 7.47 7.07 -30.29 -0.21 7.26 16 17 O -0.40 -9.66 13.22 5.95 0.08 -9.58 16 18 C -0.08 -1.35 5.80 -29.03 -0.17 -1.51 16 19 C -0.15 -2.43 4.81 -102.71 -0.49 -2.93 16 20 C 0.06 0.77 11.73 -16.73 -0.20 0.57 16 21 N -0.60 -7.44 6.07 -10.65 -0.06 -7.50 16 22 H 0.41 3.63 8.96 -40.82 -0.37 3.26 16 23 C 0.10 1.39 7.28 -83.99 -0.61 0.78 16 24 C -0.13 -1.69 10.08 -39.43 -0.40 -2.08 16 25 C -0.10 -1.24 10.01 -39.54 -0.40 -1.64 16 26 C -0.15 -1.99 9.97 -39.94 -0.40 -2.39 16 27 C -0.06 -0.98 10.05 -39.64 -0.40 -1.38 16 28 C -0.09 -1.50 6.35 -105.14 -0.67 -2.17 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.12 3.06 5.37 -51.92 -0.28 2.78 16 37 H 0.06 1.40 7.24 -51.93 -0.38 1.02 16 38 H 0.27 6.79 8.29 -40.82 -0.34 6.45 16 39 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -31.64 379.57 -9.49 -41.13 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.40 Total: 9.43 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -4.20 Total: -7.17 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.26 Total: -39.85 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.16 Total: -24.89 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.64 -9.49 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183097000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.664 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds