Wall clock time and date at job start Tue Mar 31 2020 16:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47521 * 2 1 4 4 C 1.52998 * 109.47791 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47497 * 180.02562 * 4 3 2 6 6 C 1.35099 * 120.00047 * 274.35971 * 5 4 3 7 7 H 1.07992 * 120.00242 * 131.15250 * 6 5 4 8 8 C 1.40018 * 119.99568 * 311.15841 * 6 5 4 9 9 N 1.30758 * 120.00129 * 3.45972 * 8 6 5 10 10 Si 1.86803 * 119.99764 * 183.45916 * 8 6 5 11 11 H 1.48499 * 109.47194 * 60.00033 * 10 8 6 12 12 H 1.48494 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46856 * 300.00132 * 10 8 6 14 14 C 1.34773 * 120.00312 * 94.35927 * 5 4 3 15 15 O 1.21599 * 119.99795 * 4.15669 * 14 5 4 16 16 C 1.48028 * 120.00259 * 184.15424 * 14 5 4 17 17 O 1.20822 * 119.99831 * 354.21520 * 16 14 5 18 18 C 1.50706 * 120.00189 * 174.49567 * 16 14 5 19 19 C 1.50699 * 109.46960 * 179.72601 * 18 16 14 20 20 C 1.34241 * 126.49760 * 264.68079 * 19 18 16 21 21 N 1.36835 * 109.92787 * 179.83656 * 20 19 18 22 22 H 0.97001 * 125.05927 * 180.18582 * 21 20 19 23 23 C 1.37686 * 109.87190 * 0.44671 * 21 20 19 24 24 C 1.39126 * 133.50472 * 179.71338 * 23 21 20 25 25 C 1.37754 * 119.77756 * 180.02562 * 24 23 21 26 26 C 1.38836 * 120.66651 * 359.97438 * 25 24 23 27 27 C 1.36628 * 120.52696 * 0.02562 * 26 25 24 28 28 C 1.39635 * 119.76412 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47453 * 300.00224 * 1 2 3 30 30 H 1.09005 * 109.47038 * 59.99603 * 1 2 3 31 31 H 1.08994 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47453 * 239.99776 * 2 1 3 33 33 H 1.09004 * 109.46892 * 119.99629 * 2 1 3 34 34 H 1.09004 * 109.46940 * 59.99461 * 3 2 1 35 35 H 1.09005 * 109.47288 * 300.00244 * 3 2 1 36 36 H 1.09009 * 109.46780 * 59.99559 * 4 3 2 37 37 H 1.09002 * 109.46645 * 300.00274 * 4 3 2 38 38 H 0.97001 * 119.99645 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.46283 * 299.72062 * 18 16 14 40 40 H 1.08998 * 109.46872 * 59.71917 * 18 16 14 41 41 H 1.07995 * 125.03790 * 359.97438 * 20 19 18 42 42 H 1.07994 * 120.11318 * 0.02562 * 24 23 21 43 43 H 1.07997 * 119.66633 * 180.02562 * 25 24 23 44 44 H 1.07991 * 119.73599 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.11519 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2002 3.4905 -1.1651 7 1 3.7944 4.4857 -1.2709 8 6 4.8731 2.8912 -2.2367 9 7 5.3050 1.6614 -2.1321 10 14 5.1539 3.8485 -3.8160 11 1 5.9564 5.0631 -3.5226 12 1 5.8844 2.9963 -4.7883 13 1 3.8448 4.2475 -4.3924 14 6 4.3661 3.4291 1.1653 15 8 4.3110 2.8058 2.2080 16 6 4.7714 4.8528 1.1746 17 8 4.9277 5.4432 0.1322 18 6 4.9953 5.5640 2.4843 19 6 5.4038 6.9900 2.2181 20 6 6.6585 7.4637 2.1611 21 7 6.6387 8.8059 1.8955 22 1 7.4243 9.3676 1.8048 23 6 5.3374 9.2413 1.7819 24 6 4.7613 10.4823 1.5295 25 6 3.3900 10.6016 1.4757 26 6 2.5746 9.4949 1.6704 27 6 3.1193 8.2669 1.9195 28 6 4.5070 8.1231 1.9784 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9337 0.9285 -0.8892 37 1 3.9329 0.9288 0.8909 38 1 5.7715 1.2464 -2.8744 39 1 4.0736 5.5527 3.0660 40 1 5.7834 5.0583 3.0423 41 1 7.5514 6.8727 2.3017 42 1 5.3870 11.3490 1.3764 43 1 2.9447 11.5657 1.2794 44 1 1.5014 9.6056 1.6246 45 1 2.4788 7.4106 2.0703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183097000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:09 Heat of formation + Delta-G solvation = -27.852936 kcal Electronic energy + Delta-G solvation = -27759.115313 eV Core-core repulsion = 23934.647226 eV Total energy + Delta-G solvation = -3824.468087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.21521 -41.18132 -39.09855 -37.75130 -37.29937 -35.58505 -34.03239 -33.49487 -31.24243 -30.22863 -30.15310 -28.58177 -26.93411 -25.63844 -23.73723 -23.24488 -22.64775 -21.91137 -21.09325 -20.13286 -19.15015 -18.69260 -17.68461 -17.33526 -16.88914 -16.61412 -16.31889 -16.18624 -16.11434 -15.66374 -15.22979 -15.06933 -14.89122 -14.80994 -14.64953 -14.18211 -13.77140 -13.74673 -13.57815 -13.41048 -13.24776 -13.01842 -12.88735 -12.85563 -12.54254 -12.27157 -12.25066 -12.06377 -11.93777 -11.87092 -11.69280 -11.68151 -11.39940 -11.07307 -10.57827 -9.94442 -9.40057 -9.10117 -8.54544 -8.29852 -6.16969 0.23947 0.44599 0.74079 1.38607 1.43001 1.49741 1.67209 2.24378 2.28605 2.41767 2.66265 3.00103 3.04006 3.82477 3.85113 3.91700 4.06251 4.10629 4.23807 4.24845 4.33093 4.35799 4.43558 4.51452 4.59086 4.64536 4.74825 4.82337 4.84441 4.88555 4.95712 5.01168 5.05255 5.08591 5.20360 5.24814 5.36150 5.42310 5.46959 5.59519 5.64635 5.72247 5.80145 5.85075 6.00365 6.26729 6.27448 6.62302 6.76551 7.01566 7.42045 7.86080 8.63249 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.003763 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.765659 B = 7439.522117 C = 8252.845224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.112 4.112 4 C 0.091 3.909 5 N -0.401 5.401 6 C -0.340 4.340 7 H 0.090 0.910 8 C 0.014 3.986 9 N -0.883 5.883 10 Si 0.979 3.021 11 H -0.278 1.278 12 H -0.271 1.271 13 H -0.263 1.263 14 C 0.398 3.602 15 O -0.613 6.613 16 C 0.346 3.654 17 O -0.424 6.424 18 C -0.061 4.061 19 C -0.190 4.190 20 C 0.070 3.930 21 N -0.583 5.583 22 H 0.431 0.569 23 C 0.078 3.922 24 C -0.132 4.132 25 C -0.106 4.106 26 C -0.151 4.151 27 C -0.097 4.097 28 C -0.123 4.123 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.043 0.957 38 H 0.277 0.723 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.197 0.803 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.139 0.861 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 12.188 5.446 13.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.150 4.150 4 C -0.031 4.031 5 N -0.118 5.118 6 C -0.470 4.470 7 H 0.107 0.893 8 C -0.191 4.191 9 N -0.520 5.520 10 Si 0.803 3.197 11 H -0.204 1.204 12 H -0.196 1.196 13 H -0.188 1.188 14 C 0.186 3.814 15 O -0.502 6.502 16 C 0.217 3.783 17 O -0.293 6.293 18 C -0.100 4.100 19 C -0.197 4.197 20 C -0.057 4.057 21 N -0.187 5.187 22 H 0.271 0.729 23 C -0.030 4.030 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.170 4.170 27 C -0.116 4.116 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.214 0.786 42 H 0.165 0.835 43 H 0.173 0.827 44 H 0.157 0.843 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.926 12.107 5.216 13.215 hybrid contribution 0.588 0.081 -0.760 0.964 sum -0.337 12.188 4.457 12.981 Atomic orbital electron populations 1.21714 0.94179 1.02388 1.01738 1.21397 0.97045 0.94839 1.01932 1.21730 0.94994 0.98073 1.00226 1.21886 0.93716 0.84481 1.03005 1.43297 1.50780 1.12447 1.05321 1.19580 1.36074 1.01114 0.90205 0.89277 1.26386 0.93969 0.96157 1.02545 1.69437 1.35569 1.13079 1.33924 0.85216 0.79086 0.78169 0.77252 1.20379 1.19554 1.18754 1.21359 0.83780 0.91311 0.84906 1.90576 1.59483 1.67522 1.32592 1.24530 0.74571 0.87315 0.91900 1.90379 1.35784 1.67195 1.35963 1.20028 1.04784 0.90598 0.94576 1.19924 0.93053 0.93304 1.13458 1.21985 0.98832 0.83948 1.00957 1.41627 1.06295 1.08326 1.62458 0.72881 1.18533 0.84590 0.95471 1.04358 1.20385 0.95699 0.94201 1.05006 1.21172 0.92369 0.99552 0.99371 1.20913 1.00943 0.92258 1.02879 1.20456 0.92861 0.98329 0.99961 1.19369 0.93849 0.93419 1.06100 0.92828 0.92838 0.90970 0.92005 0.92031 0.94182 0.93081 0.87509 0.93842 0.91189 0.87648 0.86299 0.78609 0.83531 0.82742 0.84281 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.11 -3.78 5.93 30.59 0.18 -3.60 16 3 C -0.11 -4.66 5.51 30.59 0.17 -4.49 16 4 C 0.09 4.53 5.12 86.38 0.44 4.97 16 5 N -0.40 -21.42 2.46 -639.23 -1.57 -22.99 16 6 C -0.34 -18.53 7.48 84.62 0.63 -17.90 16 7 H 0.09 5.01 6.30 -2.91 -0.02 4.99 16 8 C 0.01 0.74 5.40 85.28 0.46 1.21 16 9 N -0.88 -47.23 10.90 21.84 0.24 -46.99 16 10 Si 0.98 42.54 29.56 68.60 2.03 44.57 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 13 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 14 C 0.40 20.50 7.63 86.84 0.66 21.16 16 15 O -0.61 -32.54 16.16 -4.03 -0.07 -32.61 16 16 C 0.35 15.68 7.07 28.29 0.20 15.88 16 17 O -0.42 -21.06 13.22 -1.64 -0.02 -21.08 16 18 C -0.06 -2.16 5.80 29.10 0.17 -2.00 16 19 C -0.19 -6.25 4.81 -18.63 -0.09 -6.33 16 20 C 0.07 1.84 11.73 83.00 0.97 2.81 16 21 N -0.58 -13.36 6.07 -187.61 -1.14 -14.50 16 22 H 0.43 6.39 8.96 -92.71 -0.83 5.56 16 23 C 0.08 2.15 7.28 39.03 0.28 2.43 16 24 C -0.13 -2.97 10.08 22.37 0.23 -2.74 16 25 C -0.11 -2.27 10.01 22.30 0.22 -2.05 16 26 C -0.15 -3.81 9.97 22.04 0.22 -3.59 16 27 C -0.10 -3.06 10.05 22.23 0.22 -2.83 16 28 C -0.12 -4.06 6.35 -20.20 -0.13 -4.18 16 29 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.11 5.60 5.37 -2.38 -0.01 5.59 16 37 H 0.04 2.21 7.24 -2.39 -0.02 2.20 16 38 H 0.28 13.87 8.29 -92.71 -0.77 13.10 16 39 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 41 H 0.20 3.85 8.06 -2.91 -0.02 3.83 16 42 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.14 2.80 8.06 -2.92 -0.02 2.77 16 45 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -70.28 379.57 5.21 -65.06 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.18 Total: 32.88 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 5.56 Total: -4.34 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -2.47 Total: -84.48 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -0.09 Total: -53.69 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.28 5.21 -65.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183097000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.211 kcal (2) G-P(sol) polarization free energy of solvation -70.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds