Wall clock time and date at job start Tue Mar 31 2020 16:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 C 1.53001 * 109.47088 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46728 * 179.97438 * 4 3 2 6 6 C 1.36959 * 120.00307 * 264.37725 * 5 4 3 7 7 H 1.07998 * 119.99610 * 129.05229 * 6 5 4 8 8 C 1.38980 * 120.00062 * 309.05925 * 6 5 4 9 9 N 1.31406 * 120.00185 * 170.86820 * 8 6 5 10 10 Si 1.86803 * 120.00016 * 350.86217 * 8 6 5 11 11 H 1.48501 * 109.46877 * 94.83517 * 10 8 6 12 12 H 1.48498 * 109.47253 * 214.83416 * 10 8 6 13 13 H 1.48499 * 109.47073 * 334.83952 * 10 8 6 14 14 C 1.34777 * 119.99643 * 84.38405 * 5 4 3 15 15 O 1.21669 * 120.00139 * 1.77537 * 14 5 4 16 16 C 1.47051 * 119.99730 * 181.76971 * 14 5 4 17 17 C 1.38018 * 120.55856 * 306.97156 * 16 14 5 18 18 N 1.33967 * 122.18783 * 179.97438 * 17 16 14 19 19 C 1.46493 * 118.59267 * 179.97438 * 18 17 16 20 20 C 1.37789 * 122.80884 * 0.28114 * 18 17 16 21 21 C 1.39288 * 120.50752 * 179.73929 * 20 18 17 22 22 C 1.37736 * 119.96907 * 180.02562 * 21 20 18 23 23 C 1.38786 * 120.73010 * 0.02562 * 22 21 20 24 24 C 1.37723 * 120.28940 * 359.48205 * 23 22 21 25 25 C 1.39500 * 119.60604 * 0.76742 * 24 23 22 26 26 C 1.47179 * 120.55631 * 126.94941 * 16 14 5 27 27 O 1.21853 * 121.41521 * 0.04342 * 26 16 14 28 28 H 1.08997 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46921 * 300.00071 * 1 2 3 30 30 H 1.09004 * 109.47290 * 60.00238 * 1 2 3 31 31 H 1.09002 * 109.47045 * 240.00424 * 2 1 3 32 32 H 1.09001 * 109.47230 * 120.00284 * 2 1 3 33 33 H 1.08998 * 109.47298 * 60.00160 * 3 2 1 34 34 H 1.09004 * 109.46861 * 300.00025 * 3 2 1 35 35 H 1.09002 * 109.47045 * 60.00424 * 4 3 2 36 36 H 1.08995 * 109.46830 * 300.00117 * 4 3 2 37 37 H 0.97000 * 120.00235 * 179.97438 * 9 8 6 38 38 H 1.07997 * 118.90520 * 359.97306 * 17 16 14 39 39 H 1.08999 * 109.47327 * 89.99957 * 19 18 17 40 40 H 1.08995 * 109.47561 * 329.99640 * 19 18 17 41 41 H 1.09005 * 109.47102 * 210.00165 * 19 18 17 42 42 H 1.07996 * 120.01409 * 359.97438 * 21 20 18 43 43 H 1.08007 * 119.63354 * 179.97438 * 22 21 20 44 44 H 1.07998 * 119.85531 * 180.02562 * 23 22 21 45 45 H 1.08005 * 120.19663 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.3955 3.4304 -1.1819 7 1 3.9899 4.4012 -1.4253 8 6 5.2596 2.7965 -2.0669 9 7 5.4435 3.2882 -3.2715 10 14 6.1598 1.2455 -1.5438 11 1 5.3928 0.0542 -1.9886 12 1 7.5097 1.2242 -2.1621 13 1 6.2922 1.2249 -0.0649 14 6 4.1756 3.4974 1.1601 15 8 3.9069 2.9481 2.2120 16 6 4.6286 4.8964 1.1560 17 6 5.8003 5.2528 0.5197 18 7 6.2432 6.5169 0.4951 19 6 7.4979 6.8067 -0.2031 20 6 5.5721 7.5550 1.1038 21 6 6.0793 8.8513 1.0529 22 6 5.3996 9.8806 1.6657 23 6 4.2089 9.6431 2.3381 24 6 3.6838 8.3711 2.3926 25 6 4.3641 7.3178 1.7810 26 6 3.8397 5.9403 1.8300 27 8 2.7987 5.6772 2.4060 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9289 -0.8909 36 1 3.9336 0.9285 0.8891 37 1 6.0469 2.8460 -3.8890 38 1 6.3794 4.4870 0.0251 39 1 7.2870 7.0447 -1.2457 40 1 8.1507 5.9352 -0.1543 41 1 7.9898 7.6561 0.2711 42 1 7.0055 9.0489 0.5339 43 1 5.7980 10.8836 1.6232 44 1 3.6875 10.4608 2.8133 45 1 2.7569 8.1880 2.9159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198967687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:53 Heat of formation + Delta-G solvation = -20.932293 kcal Electronic energy + Delta-G solvation = -28526.128993 eV Core-core repulsion = 24701.961008 eV Total energy + Delta-G solvation = -3824.167985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.89203 -38.80566 -37.62218 -37.11492 -35.31489 -34.02080 -32.30046 -31.88707 -30.66169 -30.28268 -28.45582 -26.71420 -24.91554 -24.17083 -23.73982 -22.79458 -21.11188 -20.65546 -19.68608 -18.25692 -17.99407 -17.09085 -16.36132 -15.88844 -15.40640 -15.16687 -15.01671 -14.77245 -14.59966 -14.31148 -13.98476 -13.92081 -13.76579 -13.53209 -13.05110 -12.83270 -12.63619 -12.45236 -12.35045 -12.32863 -12.14665 -11.87959 -11.67235 -11.35588 -11.30095 -11.20689 -11.03882 -10.62778 -10.58066 -10.31302 -10.06230 -9.78119 -9.30107 -9.12905 -9.04669 -8.85664 -8.54735 -7.61381 -7.24921 -6.49333 -4.26306 0.95027 1.13915 2.07909 2.77142 3.00257 3.13812 3.21943 3.23345 3.80646 4.07068 4.16488 4.48126 4.61477 4.65306 4.81047 4.91636 4.98909 5.08661 5.24598 5.30418 5.39959 5.41439 5.43367 5.47176 5.54209 5.59922 5.84293 5.89526 5.92783 6.04249 6.17773 6.19089 6.24400 6.26745 6.31826 6.35633 6.42395 6.47995 6.56995 6.74518 6.75267 6.89975 7.00067 7.09324 7.32842 7.46446 8.10860 8.27073 8.39957 8.95076 9.35554 9.74360 10.59452 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012909 B = 0.004696 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.581685 B = 5961.321927 C = 7509.710450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.128 4.128 4 C 0.109 3.891 5 N -0.473 5.473 6 C -0.335 4.335 7 H 0.097 0.903 8 C 0.067 3.933 9 N -0.870 5.870 10 Si 0.869 3.131 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.258 1.258 14 C 0.563 3.437 15 O -0.575 6.575 16 C -0.290 4.290 17 C 0.222 3.778 18 N -0.494 5.494 19 C 0.060 3.940 20 C 0.196 3.804 21 C -0.180 4.180 22 C -0.063 4.063 23 C -0.168 4.168 24 C -0.029 4.029 25 C -0.188 4.188 26 C 0.433 3.567 27 O -0.481 6.481 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.274 0.726 38 H 0.172 0.828 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 8.787 3.503 10.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.167 4.167 4 C -0.014 4.014 5 N -0.195 5.195 6 C -0.463 4.463 7 H 0.114 0.886 8 C -0.140 4.140 9 N -0.506 5.506 10 Si 0.696 3.304 11 H -0.197 1.197 12 H -0.214 1.214 13 H -0.182 1.182 14 C 0.352 3.648 15 O -0.458 6.458 16 C -0.301 4.301 17 C 0.094 3.906 18 N -0.183 5.183 19 C -0.082 4.082 20 C 0.094 3.906 21 C -0.201 4.201 22 C -0.082 4.082 23 C -0.188 4.188 24 C -0.048 4.048 25 C -0.192 4.192 26 C 0.317 3.683 27 O -0.361 6.361 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.189 0.811 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.249 8.353 4.032 10.202 hybrid contribution 0.615 -0.792 -0.401 1.080 sum 4.864 7.561 3.631 9.696 Atomic orbital electron populations 1.21742 0.96241 1.00777 1.01800 1.21476 0.95557 0.97517 1.01478 1.21878 0.96219 0.95908 1.02669 1.21570 0.93890 0.85354 1.00592 1.43603 1.58471 1.11626 1.05808 1.19015 1.27061 1.05884 0.94365 0.88557 1.25513 0.95765 0.97629 0.95050 1.69680 1.35659 1.40304 1.04927 0.86957 0.79340 0.83783 0.80342 1.19693 1.21400 1.18208 1.17578 0.78901 0.84890 0.83474 1.90655 1.53796 1.69572 1.31744 1.21652 0.99780 0.96445 1.12194 1.22056 0.94858 0.84493 0.89226 1.42718 1.22494 1.05461 1.47596 1.22345 0.84064 1.03719 0.98067 1.17952 0.91648 0.88007 0.92949 1.20778 1.02435 0.90575 1.06308 1.21024 0.94251 0.98396 0.94529 1.21035 0.97522 0.96888 1.03313 1.21113 0.98329 0.91166 0.94161 1.20339 0.96370 0.97079 1.05444 1.19472 0.84830 0.85991 0.77999 1.90647 1.22648 1.84044 1.38800 0.93346 0.92840 0.92853 0.92368 0.92301 0.91688 0.91525 0.91790 0.91857 0.91571 0.81091 0.90145 0.89308 0.89680 0.84907 0.85489 0.85553 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.63 5.50 -26.73 -0.15 -2.77 16 4 C 0.11 2.46 3.80 -4.04 -0.02 2.45 16 5 N -0.47 -11.64 1.99 -116.16 -0.23 -11.87 16 6 C -0.34 -8.43 7.10 -14.99 -0.11 -8.54 16 7 H 0.10 2.66 7.88 -52.49 -0.41 2.25 16 8 C 0.07 1.66 5.40 -17.46 -0.09 1.57 16 9 N -0.87 -22.49 13.96 55.50 0.77 -21.72 16 10 Si 0.87 19.35 24.92 -169.99 -4.24 15.11 16 11 H -0.27 -5.97 6.92 56.52 0.39 -5.58 16 12 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.26 -5.86 7.03 56.52 0.40 -5.46 16 14 C 0.56 14.30 6.90 -12.69 -0.09 14.21 16 15 O -0.58 -16.03 16.59 5.21 0.09 -15.95 16 16 C -0.29 -6.54 5.17 -102.78 -0.53 -7.07 16 17 C 0.22 4.15 8.56 -16.70 -0.14 4.00 16 18 N -0.49 -7.41 3.02 -121.50 -0.37 -7.77 16 19 C 0.06 0.60 9.99 59.84 0.60 1.20 16 20 C 0.20 2.97 6.53 -83.94 -0.55 2.42 16 21 C -0.18 -2.05 9.14 -39.37 -0.36 -2.41 16 22 C -0.06 -0.64 10.01 -39.56 -0.40 -1.04 16 23 C -0.17 -1.93 10.03 -39.57 -0.40 -2.32 16 24 C -0.03 -0.44 9.65 -39.30 -0.38 -0.81 16 25 C -0.19 -3.34 5.89 -104.81 -0.62 -3.96 16 26 C 0.43 9.65 7.14 -32.19 -0.23 9.42 16 27 O -0.48 -12.13 16.86 5.04 0.09 -12.05 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.06 1.43 4.47 -51.93 -0.23 1.20 16 36 H 0.06 1.44 7.57 -51.93 -0.39 1.04 16 37 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 38 H 0.17 3.15 7.18 -52.49 -0.38 2.77 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.79 7.92 -51.93 -0.41 0.38 16 41 H 0.08 0.61 6.02 -51.93 -0.31 0.29 16 42 H 0.13 1.10 6.04 -52.49 -0.32 0.78 16 43 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.14 2.00 7.79 -52.48 -0.41 1.60 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -33.39 369.47 -7.81 -41.20 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.24 Total: 5.11 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.24 Total: 2.37 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.18 Total: -41.36 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: 0.17 Total: -28.00 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.24 Total: 15.11 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.39 -7.81 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198967687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.266 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds