Wall clock time and date at job start Tue Mar 31 2020 16:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 C 1.53001 * 109.47088 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46728 * 179.97438 * 4 3 2 6 6 C 1.36959 * 120.00307 * 264.37725 * 5 4 3 7 7 H 1.07998 * 119.99610 * 129.05229 * 6 5 4 8 8 C 1.38980 * 120.00062 * 309.05925 * 6 5 4 9 9 N 1.31406 * 120.00185 * 170.86820 * 8 6 5 10 10 Si 1.86803 * 120.00016 * 350.86217 * 8 6 5 11 11 H 1.48501 * 109.46877 * 94.83517 * 10 8 6 12 12 H 1.48498 * 109.47253 * 214.83416 * 10 8 6 13 13 H 1.48499 * 109.47073 * 334.83952 * 10 8 6 14 14 C 1.34777 * 119.99643 * 84.38405 * 5 4 3 15 15 O 1.21669 * 120.00139 * 1.77537 * 14 5 4 16 16 C 1.47051 * 119.99730 * 181.76971 * 14 5 4 17 17 C 1.38018 * 120.55856 * 306.97156 * 16 14 5 18 18 N 1.33967 * 122.18783 * 179.97438 * 17 16 14 19 19 C 1.46493 * 118.59267 * 179.97438 * 18 17 16 20 20 C 1.37789 * 122.80884 * 0.28114 * 18 17 16 21 21 C 1.39288 * 120.50752 * 179.73929 * 20 18 17 22 22 C 1.37736 * 119.96907 * 180.02562 * 21 20 18 23 23 C 1.38786 * 120.73010 * 0.02562 * 22 21 20 24 24 C 1.37723 * 120.28940 * 359.48205 * 23 22 21 25 25 C 1.39500 * 119.60604 * 0.76742 * 24 23 22 26 26 C 1.47179 * 120.55631 * 126.94941 * 16 14 5 27 27 O 1.21853 * 121.41521 * 0.04342 * 26 16 14 28 28 H 1.08997 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46921 * 300.00071 * 1 2 3 30 30 H 1.09004 * 109.47290 * 60.00238 * 1 2 3 31 31 H 1.09002 * 109.47045 * 240.00424 * 2 1 3 32 32 H 1.09001 * 109.47230 * 120.00284 * 2 1 3 33 33 H 1.08998 * 109.47298 * 60.00160 * 3 2 1 34 34 H 1.09004 * 109.46861 * 300.00025 * 3 2 1 35 35 H 1.09002 * 109.47045 * 60.00424 * 4 3 2 36 36 H 1.08995 * 109.46830 * 300.00117 * 4 3 2 37 37 H 0.97000 * 120.00235 * 179.97438 * 9 8 6 38 38 H 1.07997 * 118.90520 * 359.97306 * 17 16 14 39 39 H 1.08999 * 109.47327 * 89.99957 * 19 18 17 40 40 H 1.08995 * 109.47561 * 329.99640 * 19 18 17 41 41 H 1.09005 * 109.47102 * 210.00165 * 19 18 17 42 42 H 1.07996 * 120.01409 * 359.97438 * 21 20 18 43 43 H 1.08007 * 119.63354 * 179.97438 * 22 21 20 44 44 H 1.07998 * 119.85531 * 180.02562 * 23 22 21 45 45 H 1.08005 * 120.19663 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.3955 3.4304 -1.1819 7 1 3.9899 4.4012 -1.4253 8 6 5.2596 2.7965 -2.0669 9 7 5.4435 3.2882 -3.2715 10 14 6.1598 1.2455 -1.5438 11 1 5.3928 0.0542 -1.9886 12 1 7.5097 1.2242 -2.1621 13 1 6.2922 1.2249 -0.0649 14 6 4.1756 3.4974 1.1601 15 8 3.9069 2.9481 2.2120 16 6 4.6286 4.8964 1.1560 17 6 5.8003 5.2528 0.5197 18 7 6.2432 6.5169 0.4951 19 6 7.4979 6.8067 -0.2031 20 6 5.5721 7.5550 1.1038 21 6 6.0793 8.8513 1.0529 22 6 5.3996 9.8806 1.6657 23 6 4.2089 9.6431 2.3381 24 6 3.6838 8.3711 2.3926 25 6 4.3641 7.3178 1.7810 26 6 3.8397 5.9403 1.8300 27 8 2.7987 5.6772 2.4060 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9289 -0.8909 36 1 3.9336 0.9285 0.8891 37 1 6.0469 2.8460 -3.8890 38 1 6.3794 4.4870 0.0251 39 1 7.2870 7.0447 -1.2457 40 1 8.1507 5.9352 -0.1543 41 1 7.9898 7.6561 0.2711 42 1 7.0055 9.0489 0.5339 43 1 5.7980 10.8836 1.6232 44 1 3.6875 10.4608 2.8133 45 1 2.7569 8.1880 2.9159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198967687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:52 Heat of formation + Delta-G solvation = -41.468147 kcal Electronic energy + Delta-G solvation = -28527.019494 eV Core-core repulsion = 24701.961008 eV Total energy + Delta-G solvation = -3825.058487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.18376 -40.60485 -39.15771 -38.32823 -37.15724 -35.70526 -33.90290 -33.59443 -31.87840 -31.38017 -29.98449 -27.86562 -26.80595 -25.62278 -25.02985 -24.24865 -22.28103 -22.16289 -21.41263 -19.88395 -19.28271 -18.62859 -18.05937 -17.39917 -16.96931 -16.54262 -16.50694 -16.23847 -15.97360 -15.65526 -15.59129 -15.26186 -15.08856 -14.98749 -14.71250 -14.45810 -14.24112 -13.98626 -13.85202 -13.48788 -13.37823 -13.16021 -13.05808 -12.94608 -12.86783 -12.38645 -12.20331 -12.10818 -12.09263 -11.90572 -11.84505 -11.49205 -11.21396 -10.89091 -10.38787 -10.23063 -9.99860 -9.60014 -8.62234 -8.46539 -6.27985 -0.23589 -0.10406 0.76890 1.20717 1.31362 1.43941 1.55458 1.77520 2.12857 2.21735 2.63445 2.87866 3.03660 3.30012 3.56915 3.71914 3.88671 3.90220 4.00077 4.08572 4.20091 4.24143 4.30407 4.35481 4.39129 4.47209 4.51850 4.57241 4.67748 4.72406 4.78335 4.84618 4.88720 4.91108 4.99559 5.01676 5.07207 5.18389 5.30439 5.38740 5.41180 5.51848 5.55649 5.68832 5.87889 6.04926 6.09877 6.24905 6.83736 6.96443 7.37850 7.80058 8.65067 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012909 B = 0.004696 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.581685 B = 5961.321927 C = 7509.710450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.120 4.120 4 C 0.103 3.897 5 N -0.477 5.477 6 C -0.332 4.332 7 H 0.062 0.938 8 C 0.047 3.953 9 N -0.894 5.894 10 Si 0.917 3.083 11 H -0.262 1.262 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.554 3.446 15 O -0.616 6.616 16 C -0.354 4.354 17 C 0.258 3.742 18 N -0.483 5.483 19 C 0.046 3.954 20 C 0.173 3.827 21 C -0.161 4.161 22 C -0.047 4.047 23 C -0.148 4.148 24 C -0.056 4.056 25 C -0.217 4.217 26 C 0.414 3.586 27 O -0.546 6.546 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.282 0.718 38 H 0.173 0.827 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.177 0.823 43 H 0.180 0.820 44 H 0.162 0.838 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.638 11.197 2.309 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.019 4.019 5 N -0.199 5.199 6 C -0.460 4.460 7 H 0.079 0.921 8 C -0.158 4.158 9 N -0.530 5.530 10 Si 0.741 3.259 11 H -0.187 1.187 12 H -0.195 1.195 13 H -0.195 1.195 14 C 0.345 3.655 15 O -0.501 6.501 16 C -0.365 4.365 17 C 0.124 3.876 18 N -0.169 5.169 19 C -0.093 4.093 20 C 0.072 3.928 21 C -0.181 4.181 22 C -0.065 4.065 23 C -0.166 4.166 24 C -0.075 4.075 25 C -0.221 4.221 26 C 0.304 3.696 27 O -0.432 6.432 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.190 0.810 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.145 0.855 42 H 0.195 0.805 43 H 0.198 0.802 44 H 0.179 0.821 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.252 10.827 2.791 13.327 hybrid contribution -0.188 -1.279 -0.092 1.296 sum 7.064 9.549 2.699 12.180 Atomic orbital electron populations 1.21720 0.94365 1.02553 1.01587 1.21471 0.97217 0.94426 1.02437 1.21789 0.94874 0.98553 1.00637 1.21703 0.95214 0.84548 1.00457 1.43719 1.58409 1.12270 1.05456 1.18613 1.27709 1.05034 0.94665 0.92051 1.25841 0.95692 0.99707 0.94603 1.69729 1.36163 1.41559 1.05581 0.86211 0.79227 0.81118 0.79298 1.18707 1.19498 1.19471 1.18127 0.78199 0.86175 0.83006 1.90583 1.55773 1.70821 1.32970 1.21514 1.02738 0.95399 1.16876 1.21923 0.92903 0.86303 0.86499 1.43109 1.23503 1.04115 1.46191 1.22819 0.82004 1.06124 0.98364 1.18294 0.91261 0.89645 0.93583 1.21324 1.03448 0.88368 1.04967 1.21674 0.92737 1.00381 0.91724 1.21497 0.97734 0.95719 1.01671 1.21189 0.98508 0.92473 0.95283 1.20239 0.98504 0.95107 1.08228 1.20058 0.84215 0.88282 0.77038 1.90574 1.25154 1.85314 1.42145 0.90499 0.93452 0.92776 0.91040 0.91616 0.94450 0.92723 0.91202 0.92317 0.90760 0.81015 0.89383 0.88057 0.85496 0.80540 0.80237 0.82062 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.91 71.98 0.71 -3.41 16 2 C -0.12 -3.93 5.93 30.59 0.18 -3.75 16 3 C -0.12 -5.21 5.50 30.59 0.17 -5.05 16 4 C 0.10 4.90 3.80 86.38 0.33 5.23 16 5 N -0.48 -25.01 1.99 -639.65 -1.27 -26.28 16 6 C -0.33 -17.54 7.10 84.07 0.60 -16.94 16 7 H 0.06 3.64 7.88 -2.91 -0.02 3.61 16 8 C 0.05 2.34 5.40 84.93 0.46 2.79 16 9 N -0.89 -46.07 13.96 21.67 0.30 -45.77 16 10 Si 0.92 39.55 24.92 68.60 1.71 41.26 16 11 H -0.26 -10.91 6.92 99.48 0.69 -10.23 16 12 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 13 H -0.27 -12.19 7.03 99.48 0.70 -11.49 16 14 C 0.55 30.63 6.90 86.55 0.60 31.22 16 15 O -0.62 -37.52 16.59 -4.24 -0.07 -37.59 16 16 C -0.35 -17.36 5.17 -18.67 -0.10 -17.45 16 17 C 0.26 9.99 8.56 84.32 0.72 10.71 16 18 N -0.48 -13.91 3.02 -538.31 -1.62 -15.53 16 19 C 0.05 0.75 9.99 127.77 1.28 2.03 16 20 C 0.17 4.96 6.53 39.01 0.25 5.22 16 21 C -0.16 -2.81 9.14 22.40 0.20 -2.60 16 22 C -0.05 -0.67 10.01 22.28 0.22 -0.45 16 23 C -0.15 -2.85 10.03 22.28 0.22 -2.63 16 24 C -0.06 -1.70 9.65 22.45 0.22 -1.48 16 25 C -0.22 -8.04 5.89 -19.99 -0.12 -8.16 16 26 C 0.41 20.37 7.14 27.06 0.19 20.57 16 27 O -0.55 -31.00 16.86 -4.83 -0.08 -31.08 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.07 3.18 4.47 -2.39 -0.01 3.17 16 36 H 0.06 2.81 7.57 -2.39 -0.02 2.79 16 37 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 38 H 0.17 6.51 7.18 -2.91 -0.02 6.49 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.10 1.46 7.92 -2.39 -0.02 1.44 16 41 H 0.13 1.03 6.02 -2.38 -0.01 1.01 16 42 H 0.18 1.54 6.04 -2.91 -0.02 1.52 16 43 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 44 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 45 H 0.12 3.91 7.79 -2.91 -0.02 3.89 16 Total: -1.00 -83.17 369.47 6.08 -77.09 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.98 Total: 22.06 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 6.14 Total: 15.85 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.59 Total: -87.58 kcal Atomic # 8 Polarization: -68.52 SS G_CDS: -0.15 Total: -68.67 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.71 Total: 41.26 kcal Total: -83.17 6.08 -77.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198967687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.621 kcal (2) G-P(sol) polarization free energy of solvation -83.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds