Wall clock time and date at job start Tue Mar 31 2020 16:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 119.99707 * 2 1 4 4 C 1.50697 * 120.00426 * 179.97438 * 2 1 3 5 5 N 1.46901 * 109.46943 * 94.99825 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47039 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.47260 * 304.99930 * 7 6 5 9 9 C 1.54807 * 109.46977 * 185.00680 * 7 6 5 10 10 N 1.45125 * 109.53862 * 172.12361 * 9 7 6 11 11 C 1.34774 * 118.75255 * 269.25559 * 10 9 7 12 12 O 1.21278 * 120.00462 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99902 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.47440 * 180.02562 * 13 11 10 15 15 C 1.76191 * 100.00048 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00557 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99981 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99880 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47427 * 60.00363 * 19 17 15 21 21 H 1.48507 * 109.46759 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47420 * 299.99971 * 19 17 15 23 23 C 1.47511 * 122.48695 * 89.28045 * 10 9 7 24 24 C 1.53558 * 111.03029 * 318.36598 * 23 10 9 25 25 C 1.51538 * 109.58258 * 320.02610 * 24 23 10 26 26 O 1.38011 * 109.47252 * 64.99739 * 7 6 5 27 27 H 1.07997 * 119.99734 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.00534 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47102 * 269.99467 * 3 2 1 30 30 H 1.08995 * 109.47365 * 29.99956 * 3 2 1 31 31 H 1.09004 * 109.46726 * 150.00137 * 3 2 1 32 32 H 1.09004 * 109.46763 * 335.00267 * 4 2 1 33 33 H 1.08995 * 109.47483 * 214.99924 * 4 2 1 34 34 H 1.00901 * 111.00067 * 303.95401 * 5 4 2 35 35 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 36 36 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 37 37 H 1.09004 * 109.45877 * 292.13614 * 9 7 6 38 38 H 1.08995 * 109.46152 * 52.09633 * 9 7 6 39 39 H 1.08996 * 109.47115 * 300.00318 * 13 11 10 40 40 H 1.09000 * 109.47182 * 60.00197 * 13 11 10 41 41 H 0.96998 * 120.00189 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.16777 * 78.77007 * 23 10 9 43 43 H 1.09004 * 109.16201 * 197.96725 * 23 10 9 44 44 H 1.09007 * 109.45668 * 80.05468 * 24 23 10 45 45 H 1.08999 * 109.45656 * 200.01468 * 24 23 10 46 46 H 1.09000 * 109.58922 * 211.18226 * 25 24 23 47 47 H 1.09000 * 109.58648 * 331.46844 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4129 -1.6693 -1.3790 6 6 3.1497 -2.9397 -1.4175 7 6 3.4957 -3.2847 -2.8673 8 1 2.5851 -3.2921 -3.4664 9 6 4.1597 -4.6821 -2.9208 10 7 4.3190 -5.0912 -4.3040 11 6 3.3301 -5.7949 -4.8900 12 8 2.3310 -6.0751 -4.2622 13 6 3.4663 -6.2345 -6.3250 14 16 1.9857 -7.1513 -6.8184 15 6 2.4033 -7.5318 -8.4872 16 1 3.3475 -7.2033 -8.8960 17 6 1.5193 -8.2546 -9.2764 18 7 0.3688 -8.6553 -8.7781 19 14 1.9618 -8.6573 -11.0460 20 1 3.2085 -9.4636 -11.0733 21 1 0.8576 -9.4311 -11.6684 22 1 2.1705 -7.3971 -11.8032 23 6 5.5225 -4.7664 -5.0928 24 6 5.9822 -3.3253 -4.8285 25 6 4.7734 -2.4167 -4.7297 26 8 4.3687 -2.3408 -3.3691 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 2.2451 1.6198 -1.0277 30 1 1.4743 2.0648 0.5138 31 1 3.0159 1.1748 0.5138 32 1 1.4386 -2.0852 0.4352 33 1 2.9742 -1.1985 0.5899 34 1 1.5900 -1.7111 -1.9614 35 1 4.0679 -2.8448 -0.8378 36 1 2.5320 -3.7309 -0.9929 37 1 5.1372 -4.6383 -2.4403 38 1 3.5307 -5.4032 -2.3989 39 1 3.5808 -5.3589 -6.9640 40 1 4.3419 -6.8757 -6.4270 41 1 -0.2488 -9.1608 -9.3294 42 1 6.3242 -5.4532 -4.8215 43 1 5.2973 -4.8815 -6.1530 44 1 6.5415 -3.2882 -3.8936 45 1 6.6204 -2.9919 -5.6468 46 1 5.0340 -1.4213 -5.0895 47 1 3.9612 -2.8222 -5.3328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199912377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:52 Heat of formation + Delta-G solvation = -57.773065 kcal Electronic energy + Delta-G solvation = -25976.859139 eV Core-core repulsion = 22286.537569 eV Total energy + Delta-G solvation = -3690.321570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.47907 -38.46742 -37.38525 -35.43467 -34.53916 -32.63592 -32.45386 -30.36733 -28.86334 -27.47821 -26.65163 -25.80793 -25.45220 -23.54413 -21.92202 -21.42758 -19.15094 -18.77315 -17.82533 -16.99052 -16.75850 -16.53448 -16.28003 -15.57179 -14.97332 -14.88723 -14.82717 -14.70733 -14.34634 -14.11581 -13.86688 -13.76834 -13.38213 -13.16345 -12.97680 -12.78076 -12.51932 -12.45582 -12.00387 -11.89723 -11.83416 -11.71912 -11.47425 -11.24225 -11.10079 -11.06812 -11.05777 -10.79633 -10.54206 -9.83975 -9.62973 -9.45208 -9.39618 -9.08589 -8.58301 -8.51427 -8.26471 -6.53821 -6.24198 -3.95312 1.91901 2.86755 2.96991 3.21396 3.23034 3.26964 3.53010 3.57193 4.04620 4.17574 4.57767 4.62647 4.63753 4.72332 4.75564 4.92059 5.02270 5.10223 5.11446 5.13250 5.21636 5.29718 5.36311 5.40171 5.41380 5.45098 5.46557 5.49692 5.58234 5.63017 5.67637 5.71767 5.77178 5.80880 5.83545 5.93223 5.95097 6.07032 6.32022 6.55869 6.64543 6.77808 7.14912 7.39469 7.56429 7.64009 8.32101 8.48688 9.20893 10.83176 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.002491 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.374082 B =11238.335716 C =12072.093763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 C -0.112 4.112 4 C 0.092 3.908 5 N -0.675 5.675 6 C 0.071 3.929 7 C 0.095 3.905 8 H 0.053 0.947 9 C 0.085 3.915 10 N -0.618 5.618 11 C 0.528 3.472 12 O -0.514 6.514 13 C -0.151 4.151 14 S -0.061 6.061 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.105 3.895 24 C -0.165 4.165 25 C 0.074 3.926 26 O -0.371 6.371 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.343 0.657 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.773 16.305 15.141 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.118 4.118 3 C -0.169 4.169 4 C -0.037 4.037 5 N -0.306 5.306 6 C -0.058 4.058 7 C 0.035 3.965 8 H 0.071 0.929 9 C -0.040 4.040 10 N -0.354 5.354 11 C 0.316 3.684 12 O -0.388 6.388 13 C -0.302 4.302 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.018 4.018 24 C -0.203 4.203 25 C -0.002 4.002 26 O -0.289 6.289 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.161 0.839 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.782 16.295 16.149 24.565 hybrid contribution 0.711 -0.911 -1.993 2.303 sum 9.492 15.384 14.157 22.961 Atomic orbital electron populations 1.23748 0.95300 1.01973 1.02216 1.21687 0.95018 0.95839 0.99216 1.20782 0.99759 0.93931 1.02415 1.21015 0.98814 0.93370 0.90493 1.60400 1.28504 1.32405 1.09323 1.21901 0.98810 0.90292 0.94830 1.21957 0.92318 0.87816 0.94442 0.92877 1.22211 1.01863 0.96673 0.83266 1.47887 1.19186 1.56126 1.12207 1.20453 0.82219 0.76848 0.88855 1.90689 1.28894 1.54435 1.64791 1.23581 1.07662 1.04381 0.94563 1.85396 1.17121 1.67499 1.13423 1.22809 1.07032 1.41401 0.97175 0.90997 1.24994 0.94472 0.94932 0.99160 1.70002 1.08079 1.35283 1.36891 0.86224 0.78174 0.78587 0.82522 1.19922 1.20789 1.19916 1.21987 0.87086 0.96055 0.96698 1.22481 0.99434 0.94833 1.03570 1.22144 0.95494 0.99581 0.82980 1.86307 1.64161 1.51965 1.26500 0.88624 0.88310 0.91044 0.92359 0.91961 0.94726 0.90429 0.83927 0.90047 0.93373 0.90227 0.89120 0.89313 0.89249 0.92100 0.91556 0.89292 0.90320 0.89608 0.89256 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 13.89 29.02 0.40 -1.19 16 2 C -0.12 -1.01 5.56 -101.06 -0.56 -1.57 16 3 C -0.11 -0.86 10.03 36.01 0.36 -0.49 16 4 C 0.09 0.81 5.84 -4.98 -0.03 0.78 16 5 N -0.68 -6.98 6.43 -115.06 -0.74 -7.72 16 6 C 0.07 0.73 5.35 -3.82 -0.02 0.71 16 7 C 0.10 1.16 2.82 -25.78 -0.07 1.09 16 8 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 9 C 0.08 1.05 4.87 -3.83 -0.02 1.04 16 10 N -0.62 -8.70 2.19 -172.47 -0.38 -9.08 16 11 C 0.53 9.90 7.65 -10.98 -0.08 9.82 16 12 O -0.51 -11.49 15.29 5.56 0.09 -11.41 16 13 C -0.15 -3.04 4.49 36.01 0.16 -2.88 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 16 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 19 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.10 1.13 6.00 -3.20 -0.02 1.12 16 24 C -0.16 -1.47 5.78 -27.18 -0.16 -1.63 16 25 C 0.07 0.80 6.37 36.42 0.23 1.03 16 26 O -0.37 -4.52 9.40 -26.52 -0.25 -4.77 16 27 H 0.10 0.77 7.99 -52.49 -0.42 0.35 16 28 H 0.10 0.71 8.04 -52.49 -0.42 0.29 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.38 8.06 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.03 0.30 7.99 -51.93 -0.41 -0.12 16 33 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.34 3.70 8.72 -39.29 -0.34 3.35 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.09 1.25 7.27 -51.93 -0.38 0.87 16 39 H 0.09 1.64 7.41 -51.92 -0.38 1.26 16 40 H 0.09 1.67 8.04 -51.92 -0.42 1.25 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 44 H 0.08 0.70 8.01 -51.92 -0.42 0.28 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.67 7.41 -51.93 -0.38 0.28 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -33.49 393.84 -9.52 -43.01 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.07 Total: 1.99 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 0.39 Total: -5.02 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: -0.38 Total: -42.11 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.16 Total: -16.17 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.49 -9.52 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199912377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.764 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds