Wall clock time and date at job start Tue Mar 31 2020 16:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 119.99707 * 2 1 4 4 C 1.50697 * 120.00426 * 179.97438 * 2 1 3 5 5 N 1.46901 * 109.46943 * 94.99825 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47039 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.47260 * 304.99930 * 7 6 5 9 9 C 1.54807 * 109.46977 * 185.00680 * 7 6 5 10 10 N 1.45125 * 109.53862 * 172.12361 * 9 7 6 11 11 C 1.34774 * 118.75255 * 269.25559 * 10 9 7 12 12 O 1.21278 * 120.00462 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99902 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.47440 * 180.02562 * 13 11 10 15 15 C 1.76191 * 100.00048 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00557 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99981 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99880 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47427 * 60.00363 * 19 17 15 21 21 H 1.48507 * 109.46759 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47420 * 299.99971 * 19 17 15 23 23 C 1.47511 * 122.48695 * 89.28045 * 10 9 7 24 24 C 1.53558 * 111.03029 * 318.36598 * 23 10 9 25 25 C 1.51538 * 109.58258 * 320.02610 * 24 23 10 26 26 O 1.38011 * 109.47252 * 64.99739 * 7 6 5 27 27 H 1.07997 * 119.99734 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.00534 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47102 * 269.99467 * 3 2 1 30 30 H 1.08995 * 109.47365 * 29.99956 * 3 2 1 31 31 H 1.09004 * 109.46726 * 150.00137 * 3 2 1 32 32 H 1.09004 * 109.46763 * 335.00267 * 4 2 1 33 33 H 1.08995 * 109.47483 * 214.99924 * 4 2 1 34 34 H 1.00901 * 111.00067 * 303.95401 * 5 4 2 35 35 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 36 36 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 37 37 H 1.09004 * 109.45877 * 292.13614 * 9 7 6 38 38 H 1.08995 * 109.46152 * 52.09633 * 9 7 6 39 39 H 1.08996 * 109.47115 * 300.00318 * 13 11 10 40 40 H 1.09000 * 109.47182 * 60.00197 * 13 11 10 41 41 H 0.96998 * 120.00189 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.16777 * 78.77007 * 23 10 9 43 43 H 1.09004 * 109.16201 * 197.96725 * 23 10 9 44 44 H 1.09007 * 109.45668 * 80.05468 * 24 23 10 45 45 H 1.08999 * 109.45656 * 200.01468 * 24 23 10 46 46 H 1.09000 * 109.58922 * 211.18226 * 25 24 23 47 47 H 1.09000 * 109.58648 * 331.46844 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4129 -1.6693 -1.3790 6 6 3.1497 -2.9397 -1.4175 7 6 3.4957 -3.2847 -2.8673 8 1 2.5851 -3.2921 -3.4664 9 6 4.1597 -4.6821 -2.9208 10 7 4.3190 -5.0912 -4.3040 11 6 3.3301 -5.7949 -4.8900 12 8 2.3310 -6.0751 -4.2622 13 6 3.4663 -6.2345 -6.3250 14 16 1.9857 -7.1513 -6.8184 15 6 2.4033 -7.5318 -8.4872 16 1 3.3475 -7.2033 -8.8960 17 6 1.5193 -8.2546 -9.2764 18 7 0.3688 -8.6553 -8.7781 19 14 1.9618 -8.6573 -11.0460 20 1 3.2085 -9.4636 -11.0733 21 1 0.8576 -9.4311 -11.6684 22 1 2.1705 -7.3971 -11.8032 23 6 5.5225 -4.7664 -5.0928 24 6 5.9822 -3.3253 -4.8285 25 6 4.7734 -2.4167 -4.7297 26 8 4.3687 -2.3408 -3.3691 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 2.2451 1.6198 -1.0277 30 1 1.4743 2.0648 0.5138 31 1 3.0159 1.1748 0.5138 32 1 1.4386 -2.0852 0.4352 33 1 2.9742 -1.1985 0.5899 34 1 1.5900 -1.7111 -1.9614 35 1 4.0679 -2.8448 -0.8378 36 1 2.5320 -3.7309 -0.9929 37 1 5.1372 -4.6383 -2.4403 38 1 3.5307 -5.4032 -2.3989 39 1 3.5808 -5.3589 -6.9640 40 1 4.3419 -6.8757 -6.4270 41 1 -0.2488 -9.1608 -9.3294 42 1 6.3242 -5.4532 -4.8215 43 1 5.2973 -4.8815 -6.1530 44 1 6.5415 -3.2882 -3.8936 45 1 6.6204 -2.9919 -5.6468 46 1 5.0340 -1.4213 -5.0895 47 1 3.9612 -2.8222 -5.3328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199912377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:52 Heat of formation + Delta-G solvation = -80.012047 kcal Electronic energy + Delta-G solvation = -25977.823494 eV Core-core repulsion = 22286.537569 eV Total energy + Delta-G solvation = -3691.285924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63379 -39.67992 -38.15360 -36.56157 -35.38025 -34.60213 -33.50454 -31.73325 -29.94739 -28.12299 -27.82829 -27.48437 -26.63185 -24.47685 -22.91175 -22.33598 -20.55727 -19.57971 -19.43622 -18.29538 -17.86671 -17.61936 -17.29177 -16.89475 -16.55633 -16.15547 -16.04350 -15.57053 -15.47035 -15.23304 -15.00842 -14.72933 -14.53659 -14.37847 -13.96217 -13.84399 -13.72657 -13.53370 -13.19481 -13.10235 -12.87818 -12.78136 -12.66826 -12.62025 -12.44301 -12.30432 -12.07732 -11.85143 -11.76282 -11.46977 -11.14322 -10.92830 -10.57432 -10.29354 -10.10096 -9.67123 -9.37919 -8.70111 -8.36089 -6.14965 1.22237 1.25856 1.42984 1.44125 1.49380 1.54046 2.03238 2.25841 2.67385 2.98046 3.18922 3.22913 3.61810 3.79866 3.86855 3.91585 3.95763 4.02745 4.08978 4.13459 4.26002 4.28048 4.39664 4.41360 4.49645 4.56595 4.60895 4.61770 4.69792 4.76161 4.80501 4.83246 4.89927 4.96187 5.03855 5.10713 5.15861 5.17581 5.39749 5.55433 5.66997 5.89428 5.99818 6.13136 6.18128 6.30219 6.68918 7.04872 7.07278 8.72921 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.002491 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.374082 B =11238.335716 C =12072.093763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 C -0.110 4.110 4 C 0.093 3.907 5 N -0.682 5.682 6 C 0.077 3.923 7 C 0.106 3.894 8 H 0.018 0.982 9 C 0.084 3.916 10 N -0.604 5.604 11 C 0.526 3.474 12 O -0.561 6.561 13 C -0.124 4.124 14 S -0.153 6.153 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.261 1.261 21 H -0.279 1.279 22 H -0.261 1.261 23 C 0.094 3.906 24 C -0.152 4.152 25 C 0.067 3.933 26 O -0.376 6.376 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.336 0.664 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.686 17.567 14.731 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.128 4.128 3 C -0.167 4.167 4 C -0.035 4.035 5 N -0.312 5.312 6 C -0.053 4.053 7 C 0.045 3.955 8 H 0.036 0.964 9 C -0.040 4.040 10 N -0.337 5.337 11 C 0.314 3.686 12 O -0.440 6.440 13 C -0.275 4.275 14 S 0.074 5.926 15 C -0.693 4.693 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.185 1.185 21 H -0.205 1.205 22 H -0.186 1.186 23 C -0.027 4.027 24 C -0.190 4.190 25 C -0.009 4.009 26 O -0.294 6.294 27 H 0.112 0.888 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.154 0.846 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.133 0.867 46 H 0.126 0.874 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.754 17.593 15.757 26.380 hybrid contribution -0.129 -1.203 -1.782 2.154 sum 11.625 16.390 13.975 24.476 Atomic orbital electron populations 1.23870 0.95367 1.02399 1.01724 1.21813 0.95264 0.96133 0.99628 1.20775 1.00066 0.93670 1.02147 1.21043 0.99239 0.93596 0.89659 1.60436 1.28324 1.32296 1.10159 1.21862 0.99411 0.90401 0.93616 1.21792 0.90918 0.87778 0.95023 0.96372 1.22354 1.03180 0.96289 0.82191 1.47908 1.18823 1.54130 1.12873 1.20264 0.82678 0.77416 0.88244 1.90672 1.31020 1.56748 1.65514 1.23396 1.04092 1.04120 0.95864 1.85590 1.22848 1.69504 1.14608 1.23151 1.07547 1.41477 0.97172 0.89843 1.26145 0.94160 0.94509 1.04363 1.70175 1.09458 1.36252 1.38899 0.85003 0.78213 0.78810 0.75977 1.18549 1.20452 1.18584 1.22338 0.86061 0.98165 0.96159 1.22419 0.98696 0.92639 1.05246 1.22334 0.95515 1.01094 0.81940 1.86308 1.63869 1.51975 1.27275 0.88844 0.87333 0.91763 0.91257 0.91537 0.94701 0.89689 0.84628 0.88645 0.93397 0.87190 0.90712 0.87585 0.87394 0.91982 0.89273 0.89446 0.89322 0.86733 0.87442 0.95244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.10 13.89 67.79 0.94 -2.15 16 2 C -0.13 -2.10 5.56 -16.48 -0.09 -2.20 16 3 C -0.11 -1.55 10.03 71.24 0.71 -0.84 16 4 C 0.09 1.58 5.84 85.56 0.50 2.08 16 5 N -0.68 -13.88 6.43 -517.93 -3.33 -17.20 16 6 C 0.08 1.53 5.35 86.30 0.46 1.99 16 7 C 0.11 2.54 2.82 31.21 0.09 2.63 16 8 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 9 C 0.08 2.01 4.87 87.25 0.42 2.43 16 10 N -0.60 -16.31 2.19 -817.97 -1.79 -18.10 16 11 C 0.53 19.92 7.65 87.66 0.67 20.59 16 12 O -0.56 -26.22 15.29 -3.02 -0.05 -26.26 16 13 C -0.12 -4.95 4.49 71.24 0.32 -4.63 16 14 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 15 C -0.55 -31.03 9.50 67.96 0.65 -30.39 16 16 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 17 C 0.01 0.74 5.49 84.86 0.47 1.20 16 18 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 19 Si 1.00 43.30 29.55 68.60 2.03 45.32 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 C 0.09 1.76 6.00 86.37 0.52 2.28 16 24 C -0.15 -2.16 5.78 30.30 0.18 -1.99 16 25 C 0.07 1.31 6.37 71.50 0.46 1.76 16 26 O -0.38 -8.57 9.40 -117.82 -1.11 -9.67 16 27 H 0.09 1.49 7.99 -2.91 -0.02 1.47 16 28 H 0.11 1.47 8.04 -2.91 -0.02 1.45 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.81 8.06 -2.39 -0.02 0.79 16 31 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 32 H 0.03 0.59 7.99 -2.39 -0.02 0.57 16 33 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.34 7.46 8.72 -89.69 -0.78 6.68 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 2.00 8.11 -2.39 -0.02 1.98 16 38 H 0.07 2.07 7.27 -2.39 -0.02 2.06 16 39 H 0.11 3.85 7.41 -2.40 -0.02 3.83 16 40 H 0.11 3.90 8.04 -2.39 -0.02 3.88 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.09 1.69 5.88 -2.38 -0.01 1.68 16 44 H 0.09 1.17 8.01 -2.38 -0.02 1.15 16 45 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 46 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.03 0.71 7.41 -2.39 -0.02 0.70 16 Total: -1.00 -75.43 393.84 1.32 -74.11 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.16 Total: 24.47 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 6.29 Total: -7.22 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -4.84 Total: -91.07 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.15 Total: -35.94 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -75.43 1.32 -74.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199912377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.907 kcal (2) G-P(sol) polarization free energy of solvation -75.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds