Wall clock time and date at job start Tue Mar 31 2020 16:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99958 * 2 1 4 4 C 1.53000 * 109.46863 * 125.00425 * 3 2 1 5 5 N 1.46907 * 109.46716 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99801 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47247 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46728 * 304.99642 * 7 6 5 9 9 C 1.54807 * 109.46930 * 185.00169 * 7 6 5 10 10 N 1.45118 * 109.52856 * 172.11365 * 9 7 6 11 11 C 1.34784 * 118.75608 * 269.25991 * 10 9 7 12 12 O 1.21283 * 119.99849 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00143 * 179.97438 * 11 10 9 14 14 S 1.81004 * 109.47241 * 179.97438 * 13 11 10 15 15 C 1.76195 * 99.99890 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99927 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00182 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99703 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47413 * 89.99797 * 19 17 15 21 21 H 1.48502 * 109.46962 * 209.99447 * 19 17 15 22 22 H 1.48498 * 109.47172 * 329.99528 * 19 17 15 23 23 C 1.47513 * 122.49052 * 89.28493 * 10 9 7 24 24 C 1.53570 * 111.02419 * 318.37051 * 23 10 9 25 25 C 1.51533 * 109.58708 * 320.02143 * 24 23 10 26 26 O 1.38016 * 109.45523 * 65.00121 * 7 6 5 27 27 H 1.07999 * 119.99727 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.99845 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99727 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47445 * 5.00353 * 3 2 1 31 31 H 1.08998 * 109.46849 * 245.00325 * 3 2 1 32 32 H 1.09001 * 109.47577 * 60.00065 * 4 3 2 33 33 H 1.08998 * 109.47306 * 299.99619 * 4 3 2 34 34 H 1.00895 * 111.00283 * 56.04560 * 5 4 3 35 35 H 1.09007 * 109.47288 * 59.99654 * 6 5 4 36 36 H 1.09001 * 109.47206 * 300.00259 * 6 5 4 37 37 H 1.09002 * 109.46212 * 52.09584 * 9 7 6 38 38 H 1.09004 * 109.45645 * 292.12508 * 9 7 6 39 39 H 1.08998 * 109.47434 * 300.00237 * 13 11 10 40 40 H 1.09006 * 109.46914 * 60.00413 * 13 11 10 41 41 H 0.97004 * 120.00070 * 179.97438 * 18 17 15 42 42 H 1.08991 * 109.16750 * 78.76702 * 23 10 9 43 43 H 1.09007 * 109.16539 * 197.97423 * 23 10 9 44 44 H 1.08997 * 109.45686 * 80.06079 * 24 23 10 45 45 H 1.09003 * 109.45353 * 200.01580 * 24 23 10 46 46 H 1.09004 * 109.59333 * 211.17945 * 25 24 23 47 47 H 1.08995 * 109.59215 * 331.62148 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7701 2.6050 1.1812 6 6 4.7142 2.6678 2.3049 7 6 5.4596 4.0035 2.2708 8 1 5.9335 4.1303 1.2974 9 6 6.5419 4.0188 3.3775 10 7 7.3705 5.2009 3.2293 11 6 8.4803 5.1236 2.4684 12 8 8.7703 4.0796 1.9233 13 6 9.3608 6.3342 2.2948 14 16 10.7606 5.9141 1.2269 15 6 11.5985 7.4638 1.1970 16 1 11.1995 8.3041 1.7457 17 6 12.7719 7.6044 0.4691 18 7 13.3976 8.7622 0.4463 19 14 13.4624 6.1507 -0.4793 20 1 12.9026 6.1460 -1.8547 21 1 14.9417 6.2618 -0.5475 22 1 13.0920 4.8888 0.2102 23 6 7.0445 6.4838 3.8804 24 6 5.5405 6.7807 3.7905 25 6 5.0240 6.3784 2.4239 26 8 4.5668 5.0338 2.4858 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 3.7401 0.5065 1.0920 33 1 2.4774 1.2355 2.1130 34 1 3.1355 3.3892 1.1982 35 1 5.4305 1.8501 2.2238 36 1 4.1677 2.5801 3.2440 37 1 7.1626 3.1270 3.2908 38 1 6.0609 4.0328 4.3556 39 1 8.7851 7.1400 1.8396 40 1 9.7308 6.6569 3.2680 41 1 14.2179 8.8603 -0.0621 42 1 7.3382 6.4377 4.9290 43 1 7.5974 7.2849 3.3896 44 1 5.0124 6.2160 4.5588 45 1 5.3712 7.8467 3.9427 46 1 4.1998 7.0319 2.1377 47 1 5.8274 6.4579 1.6916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199925189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:58 Heat of formation + Delta-G solvation = -59.999477 kcal Electronic energy + Delta-G solvation = -25791.816293 eV Core-core repulsion = 22101.398179 eV Total energy + Delta-G solvation = -3690.418114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58412 -38.58772 -37.16111 -35.52247 -34.73090 -32.96991 -32.45529 -30.59245 -29.76358 -27.77218 -26.59458 -25.63763 -24.46813 -22.43887 -22.00762 -21.44336 -20.10643 -19.23318 -17.83615 -17.09727 -16.90466 -16.56718 -16.26570 -16.00945 -15.50796 -15.10963 -14.97837 -14.81470 -14.37218 -14.07020 -13.83603 -13.66216 -13.63411 -13.04359 -12.95784 -12.80618 -12.74704 -12.61695 -12.10465 -12.04179 -11.80293 -11.54534 -11.39240 -11.27532 -11.24302 -11.18628 -11.01923 -10.75338 -10.56179 -9.87109 -9.75353 -9.69978 -9.51478 -9.01845 -8.67299 -8.60100 -8.50556 -6.94133 -6.30561 -4.02537 1.91298 2.66551 2.86085 3.13722 3.32399 3.46128 3.49612 3.55567 3.86733 4.31555 4.50413 4.54700 4.57336 4.66699 4.77242 4.84961 4.91672 4.95391 4.96370 5.03293 5.05338 5.08712 5.14091 5.27713 5.31641 5.32409 5.42722 5.47076 5.52023 5.57438 5.61872 5.69578 5.70124 5.75750 5.77478 5.87270 5.90365 5.95515 6.26336 6.39930 6.57072 6.74872 7.16712 7.28576 7.48233 7.92313 8.37904 8.39429 9.15664 10.78550 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.002469 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.565717 B =11338.369130 C =12500.264444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.094 4.094 4 C 0.063 3.937 5 N -0.688 5.688 6 C 0.075 3.925 7 C 0.091 3.909 8 H 0.066 0.934 9 C 0.086 3.914 10 N -0.617 5.617 11 C 0.527 3.473 12 O -0.513 6.513 13 C -0.123 4.123 14 S -0.142 6.142 15 C -0.522 4.522 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.103 3.897 24 C -0.165 4.165 25 C 0.077 3.923 26 O -0.390 6.390 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.348 0.652 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.589 -10.259 6.561 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.132 4.132 4 C -0.066 4.066 5 N -0.319 5.319 6 C -0.055 4.055 7 C 0.031 3.969 8 H 0.084 0.916 9 C -0.039 4.039 10 N -0.353 5.353 11 C 0.314 3.686 12 O -0.387 6.387 13 C -0.273 4.273 14 S 0.085 5.915 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.516 5.516 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.020 4.020 24 C -0.203 4.203 25 C 0.001 3.999 26 O -0.309 6.309 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.695 -11.942 5.304 27.060 hybrid contribution -0.131 1.160 0.987 1.529 sum -23.826 -10.782 6.292 26.899 Atomic orbital electron populations 1.23860 0.95975 1.01814 1.01760 1.22938 0.96000 0.98541 0.99373 1.20740 0.97745 0.95128 0.99537 1.21893 0.95380 0.92691 0.96614 1.60412 1.21908 1.04598 1.45004 1.21870 0.95676 0.95655 0.92261 1.22050 0.89822 0.86832 0.98232 0.91614 1.22198 0.93116 0.89471 0.99097 1.47860 1.25059 1.11399 1.50969 1.20420 0.80475 0.90034 0.77648 1.90699 1.71316 1.30778 1.45916 1.23342 1.00331 0.98497 1.05124 1.84815 1.23710 1.20011 1.63011 1.22299 1.12046 0.95540 1.37028 0.89417 1.24709 0.95352 0.96029 0.95184 1.69936 1.17777 1.23419 1.40483 0.86738 0.79050 0.84360 0.81732 1.19179 1.19929 1.15933 1.22017 0.96259 0.85415 0.98277 1.22470 0.95478 1.02816 0.99544 1.22153 0.99743 0.82009 0.96024 1.86147 1.39069 1.13944 1.91706 0.88641 0.88562 0.87304 0.91612 0.89897 0.90846 0.95264 0.83341 0.89390 0.94424 0.88927 0.90338 0.88612 0.88516 0.91930 0.91383 0.89150 0.90352 0.89416 0.89133 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 14.32 29.01 0.42 -0.85 16 2 C -0.15 -1.04 9.52 -36.03 -0.34 -1.38 16 3 C -0.09 -0.70 5.92 -27.88 -0.17 -0.87 16 4 C 0.06 0.52 5.67 -3.82 -0.02 0.50 16 5 N -0.69 -6.73 6.50 -113.77 -0.74 -7.47 16 6 C 0.08 0.74 5.38 -3.82 -0.02 0.72 16 7 C 0.09 1.05 2.88 -25.78 -0.07 0.98 16 8 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 9 C 0.09 1.02 4.87 -3.83 -0.02 1.00 16 10 N -0.62 -8.26 2.19 -172.47 -0.38 -8.64 16 11 C 0.53 9.42 7.65 -10.98 -0.08 9.33 16 12 O -0.51 -10.98 15.29 5.55 0.08 -10.89 16 13 C -0.12 -2.36 4.49 36.00 0.16 -2.20 16 14 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 15 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 16 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.39 13.97 55.49 0.78 -25.62 16 19 Si 0.86 21.77 27.74 -169.99 -4.71 17.06 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 23 C 0.10 1.06 6.00 -3.19 -0.02 1.04 16 24 C -0.16 -1.36 5.78 -27.18 -0.16 -1.51 16 25 C 0.08 0.75 6.37 36.42 0.23 0.98 16 26 O -0.39 -4.24 8.97 -26.54 -0.24 -4.48 16 27 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 28 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 29 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.35 3.33 8.29 -39.29 -0.33 3.01 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 1.22 7.27 -51.93 -0.38 0.84 16 38 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 39 H 0.10 1.71 7.41 -51.92 -0.38 1.33 16 40 H 0.10 1.74 8.04 -51.91 -0.42 1.32 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.95 5.88 -51.93 -0.31 0.65 16 44 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.66 7.40 -51.93 -0.38 0.28 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -33.06 390.33 -9.28 -42.33 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.08 Total: 1.59 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 0.12 Total: -4.18 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.34 Total: -41.73 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.15 Total: -15.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.06 -9.28 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199925189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.665 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds