Wall clock time and date at job start Tue Mar 31 2020 16:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99958 * 2 1 4 4 C 1.53000 * 109.46863 * 125.00425 * 3 2 1 5 5 N 1.46907 * 109.46716 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99801 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47247 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46728 * 304.99642 * 7 6 5 9 9 C 1.54807 * 109.46930 * 185.00169 * 7 6 5 10 10 N 1.45118 * 109.52856 * 172.11365 * 9 7 6 11 11 C 1.34784 * 118.75608 * 269.25991 * 10 9 7 12 12 O 1.21283 * 119.99849 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00143 * 179.97438 * 11 10 9 14 14 S 1.81004 * 109.47241 * 179.97438 * 13 11 10 15 15 C 1.76195 * 99.99890 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99927 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00182 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99703 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47413 * 89.99797 * 19 17 15 21 21 H 1.48502 * 109.46962 * 209.99447 * 19 17 15 22 22 H 1.48498 * 109.47172 * 329.99528 * 19 17 15 23 23 C 1.47513 * 122.49052 * 89.28493 * 10 9 7 24 24 C 1.53570 * 111.02419 * 318.37051 * 23 10 9 25 25 C 1.51533 * 109.58708 * 320.02143 * 24 23 10 26 26 O 1.38016 * 109.45523 * 65.00121 * 7 6 5 27 27 H 1.07999 * 119.99727 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.99845 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99727 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47445 * 5.00353 * 3 2 1 31 31 H 1.08998 * 109.46849 * 245.00325 * 3 2 1 32 32 H 1.09001 * 109.47577 * 60.00065 * 4 3 2 33 33 H 1.08998 * 109.47306 * 299.99619 * 4 3 2 34 34 H 1.00895 * 111.00283 * 56.04560 * 5 4 3 35 35 H 1.09007 * 109.47288 * 59.99654 * 6 5 4 36 36 H 1.09001 * 109.47206 * 300.00259 * 6 5 4 37 37 H 1.09002 * 109.46212 * 52.09584 * 9 7 6 38 38 H 1.09004 * 109.45645 * 292.12508 * 9 7 6 39 39 H 1.08998 * 109.47434 * 300.00237 * 13 11 10 40 40 H 1.09006 * 109.46914 * 60.00413 * 13 11 10 41 41 H 0.97004 * 120.00070 * 179.97438 * 18 17 15 42 42 H 1.08991 * 109.16750 * 78.76702 * 23 10 9 43 43 H 1.09007 * 109.16539 * 197.97423 * 23 10 9 44 44 H 1.08997 * 109.45686 * 80.06079 * 24 23 10 45 45 H 1.09003 * 109.45353 * 200.01580 * 24 23 10 46 46 H 1.09004 * 109.59333 * 211.17945 * 25 24 23 47 47 H 1.08995 * 109.59215 * 331.62148 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7701 2.6050 1.1812 6 6 4.7142 2.6678 2.3049 7 6 5.4596 4.0035 2.2708 8 1 5.9335 4.1303 1.2974 9 6 6.5419 4.0188 3.3775 10 7 7.3705 5.2009 3.2293 11 6 8.4803 5.1236 2.4684 12 8 8.7703 4.0796 1.9233 13 6 9.3608 6.3342 2.2948 14 16 10.7606 5.9141 1.2269 15 6 11.5985 7.4638 1.1970 16 1 11.1995 8.3041 1.7457 17 6 12.7719 7.6044 0.4691 18 7 13.3976 8.7622 0.4463 19 14 13.4624 6.1507 -0.4793 20 1 12.9026 6.1460 -1.8547 21 1 14.9417 6.2618 -0.5475 22 1 13.0920 4.8888 0.2102 23 6 7.0445 6.4838 3.8804 24 6 5.5405 6.7807 3.7905 25 6 5.0240 6.3784 2.4239 26 8 4.5668 5.0338 2.4858 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 3.7401 0.5065 1.0920 33 1 2.4774 1.2355 2.1130 34 1 3.1355 3.3892 1.1982 35 1 5.4305 1.8501 2.2238 36 1 4.1677 2.5801 3.2440 37 1 7.1626 3.1270 3.2908 38 1 6.0609 4.0328 4.3556 39 1 8.7851 7.1400 1.8396 40 1 9.7308 6.6569 3.2680 41 1 14.2179 8.8603 -0.0621 42 1 7.3382 6.4377 4.9290 43 1 7.5974 7.2849 3.3896 44 1 5.0124 6.2160 4.5588 45 1 5.3712 7.8467 3.9427 46 1 4.1998 7.0319 2.1377 47 1 5.8274 6.4579 1.6916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199925189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:57 Heat of formation + Delta-G solvation = -81.838312 kcal Electronic energy + Delta-G solvation = -25792.763296 eV Core-core repulsion = 22101.398179 eV Total energy + Delta-G solvation = -3691.365117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67353 -39.74009 -37.88026 -36.57318 -35.45249 -34.68505 -33.77485 -31.82461 -30.68857 -28.71741 -27.86444 -27.45510 -25.40040 -23.12164 -22.95142 -22.29082 -20.66937 -20.57609 -19.57506 -18.32909 -18.02154 -17.57456 -17.22406 -17.11971 -16.75640 -16.42814 -16.16356 -15.79794 -15.45388 -15.32365 -15.03797 -14.91394 -14.62516 -14.33860 -13.99279 -13.80786 -13.65561 -13.50311 -13.37057 -13.23536 -13.03395 -12.82800 -12.73466 -12.61132 -12.30088 -12.10910 -11.92963 -11.88283 -11.82475 -11.55404 -11.18577 -10.97221 -10.63021 -10.53646 -10.22859 -9.70688 -9.39870 -9.02429 -8.52863 -6.24009 0.95176 1.30022 1.39653 1.44262 1.45063 1.52192 1.99751 2.23548 2.62785 2.65765 2.85375 3.11332 3.46317 3.77040 3.88611 3.92595 4.02392 4.06314 4.08806 4.20234 4.25588 4.29039 4.30337 4.37145 4.42450 4.45539 4.49087 4.60880 4.69486 4.72545 4.75457 4.81464 4.93718 4.94568 5.09351 5.11759 5.14222 5.18081 5.53053 5.69441 5.75624 5.87183 6.02962 6.09258 6.10319 6.43939 6.58616 6.92384 7.02439 8.59301 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.002469 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.565717 B =11338.369130 C =12500.264444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.089 4.089 4 C 0.067 3.933 5 N -0.700 5.700 6 C 0.080 3.920 7 C 0.102 3.898 8 H 0.027 0.973 9 C 0.085 3.915 10 N -0.603 5.603 11 C 0.527 3.473 12 O -0.557 6.557 13 C -0.106 4.106 14 S -0.178 6.178 15 C -0.528 4.528 16 H 0.064 0.936 17 C 0.047 3.953 18 N -0.914 5.914 19 Si 0.912 3.088 20 H -0.263 1.263 21 H -0.258 1.258 22 H -0.238 1.238 23 C 0.092 3.908 24 C -0.153 4.153 25 C 0.069 3.931 26 O -0.389 6.389 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.349 0.651 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.277 0.723 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.638 -10.743 7.832 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.180 4.180 3 C -0.127 4.127 4 C -0.062 4.062 5 N -0.332 5.332 6 C -0.050 4.050 7 C 0.042 3.958 8 H 0.045 0.955 9 C -0.039 4.039 10 N -0.336 5.336 11 C 0.314 3.686 12 O -0.435 6.435 13 C -0.257 4.257 14 S 0.049 5.951 15 C -0.675 4.675 16 H 0.082 0.918 17 C -0.158 4.158 18 N -0.552 5.552 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.182 1.182 22 H -0.162 1.162 23 C -0.029 4.029 24 C -0.191 4.191 25 C -0.006 4.006 26 O -0.308 6.308 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.168 0.832 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -25.783 -12.399 6.608 29.363 hybrid contribution 0.332 1.388 0.678 1.580 sum -25.451 -11.012 7.286 28.672 Atomic orbital electron populations 1.24027 0.95865 1.02561 1.00639 1.22971 0.96300 0.98389 1.00367 1.20675 0.97566 0.95729 0.98692 1.21882 0.95318 0.91765 0.97198 1.60402 1.22302 1.05339 1.45186 1.21802 0.95659 0.94421 0.93078 1.21835 0.89855 0.88040 0.96067 0.95520 1.22346 0.92695 0.88197 1.00666 1.47885 1.23429 1.13135 1.49190 1.20160 0.81487 0.88739 0.78181 1.90683 1.72750 1.31920 1.48131 1.23309 0.98256 0.99774 1.04365 1.84759 1.26574 1.18476 1.65291 1.22428 1.12397 0.96286 1.36416 0.91813 1.25528 0.95783 0.98417 0.96109 1.70008 1.18534 1.25128 1.41565 0.85897 0.79166 0.81144 0.80356 1.18781 1.18232 1.16212 1.22354 0.98050 0.83492 0.98992 1.22418 0.93465 1.04614 0.98587 1.22348 0.99954 0.81808 0.96529 1.86163 1.38818 1.14266 1.91521 0.88297 0.87473 0.86834 0.91324 0.91026 0.91152 0.94577 0.83230 0.89780 0.92822 0.90382 0.87350 0.87176 0.86962 0.91348 0.89249 0.89523 0.89271 0.86778 0.87017 0.95001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 14.32 67.78 0.97 -1.23 16 2 C -0.16 -2.07 9.52 25.64 0.24 -1.82 16 3 C -0.09 -1.27 5.92 29.85 0.18 -1.10 16 4 C 0.07 1.04 5.67 86.30 0.49 1.53 16 5 N -0.70 -13.24 6.50 -513.85 -3.34 -16.59 16 6 C 0.08 1.51 5.38 86.30 0.46 1.97 16 7 C 0.10 2.30 2.88 31.21 0.09 2.39 16 8 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 9 C 0.08 1.89 4.87 87.26 0.42 2.32 16 10 N -0.60 -15.29 2.19 -817.95 -1.79 -17.08 16 11 C 0.53 18.70 7.65 87.65 0.67 19.37 16 12 O -0.56 -24.23 15.29 -3.04 -0.05 -24.27 16 13 C -0.11 -4.06 4.49 71.23 0.32 -3.74 16 14 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 15 C -0.53 -30.67 10.04 67.96 0.68 -29.98 16 16 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 17 C 0.05 2.77 5.50 84.86 0.47 3.24 16 18 N -0.91 -55.45 13.97 21.65 0.30 -55.15 16 19 Si 0.91 45.20 27.74 68.60 1.90 47.10 16 20 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 23 C 0.09 1.64 6.00 86.38 0.52 2.16 16 24 C -0.15 -1.97 5.78 30.30 0.18 -1.80 16 25 C 0.07 1.20 6.37 71.50 0.46 1.66 16 26 O -0.39 -7.73 8.97 -117.88 -1.06 -8.79 16 27 H 0.10 1.03 7.84 -2.91 -0.02 1.01 16 28 H 0.11 0.96 8.06 -2.91 -0.02 0.94 16 29 H 0.11 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.07 0.92 7.79 -2.39 -0.02 0.90 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.35 6.35 8.29 -89.70 -0.74 5.61 16 35 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 2.02 7.27 -2.39 -0.02 2.00 16 38 H 0.11 1.81 8.11 -2.39 -0.02 1.79 16 39 H 0.11 3.88 7.41 -2.40 -0.02 3.86 16 40 H 0.11 3.93 8.04 -2.39 -0.02 3.91 16 41 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.63 5.88 -2.38 -0.01 1.61 16 44 H 0.09 1.04 8.01 -2.39 -0.02 1.02 16 45 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.11 1.47 8.14 -2.38 -0.02 1.46 16 47 H 0.03 0.72 7.40 -2.39 -0.02 0.70 16 Total: -1.00 -72.65 390.33 1.23 -71.42 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.16 Total: 18.49 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 6.15 Total: -5.04 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -4.83 Total: -88.81 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.10 Total: -33.06 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -72.65 1.23 -71.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199925189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.419 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds