Wall clock time and date at job start Tue Mar 31 2020 14:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39717 * 119.99498 * 263.46470 * 3 2 1 5 5 C 1.37596 * 119.99858 * 180.02562 * 4 3 2 6 6 C 1.39745 * 120.00133 * 359.97438 * 5 4 3 7 7 C 1.47686 * 120.00631 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00176 * 321.52812 * 7 6 5 9 9 N 1.34779 * 119.99995 * 141.52255 * 7 6 5 10 10 C 1.47520 * 118.76920 * 354.22431 * 9 7 6 11 11 C 1.53578 * 111.01923 * 221.65338 * 10 9 7 12 12 C 1.51540 * 109.57887 * 39.96300 * 11 10 9 13 13 O 1.42148 * 108.75774 * 268.59520 * 12 11 10 14 14 C 1.38013 * 119.43735 * 87.23173 * 13 12 11 15 15 H 1.08997 * 109.47584 * 56.57838 * 14 13 12 16 16 C 1.53004 * 109.46838 * 176.57326 * 14 13 12 17 17 N 1.46495 * 109.47446 * 300.00459 * 16 14 13 18 18 C 1.36933 * 120.00348 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00259 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00249 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99996 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47236 * 60.00694 * 22 20 18 24 24 H 1.48501 * 109.47090 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47362 * 300.00303 * 22 20 18 26 26 C 1.45119 * 118.75929 * 174.21836 * 9 7 6 27 27 C 1.39745 * 119.98854 * 0.25410 * 6 5 4 28 28 C 1.37601 * 119.99947 * 359.50837 * 27 6 5 29 29 H 4.51955 * 14.06632 * 359.97438 * 4 2 1 30 30 H 1.07995 * 119.99597 * 359.97438 * 4 3 2 31 31 H 1.08006 * 120.00028 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.18607 * 101.25377 * 10 9 7 33 33 H 1.09000 * 109.15978 * 342.03816 * 10 9 7 34 34 H 1.08993 * 109.45353 * 279.93385 * 11 10 9 35 35 H 1.08996 * 109.45218 * 159.99566 * 11 10 9 36 36 H 1.08997 * 109.58971 * 148.81280 * 12 11 10 37 37 H 1.09000 * 109.71267 * 28.45312 * 12 11 10 38 38 H 1.09001 * 109.47008 * 60.00534 * 16 14 13 39 39 H 1.09003 * 109.46940 * 180.02562 * 16 14 13 40 40 H 0.97008 * 119.99716 * 359.97438 * 17 16 14 41 41 H 0.96997 * 120.00100 * 179.97438 * 21 20 18 42 42 H 1.09006 * 109.45830 * 330.67500 * 26 9 7 43 43 H 1.08994 * 109.46708 * 210.70220 * 26 9 7 44 44 H 1.08002 * 119.99895 * 179.72807 * 27 6 5 45 45 H 1.07996 * 120.00268 * 180.22725 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3045 0.1387 1.2022 5 6 4.6804 0.1398 1.2022 6 6 5.3793 0.0024 -0.0001 7 6 6.8562 0.0042 -0.0003 8 8 7.4633 0.7498 0.7437 9 7 7.5310 -0.8209 -0.8251 10 6 6.7729 -1.8040 -1.6220 11 6 7.4878 -3.1631 -1.6451 12 6 8.0625 -3.4579 -0.2743 13 8 9.3952 -2.9661 -0.2220 14 6 9.6204 -1.6551 0.1459 15 1 9.1789 -1.4715 1.1254 16 6 11.1268 -1.3946 0.2087 17 7 11.7366 -2.2902 1.1946 18 6 13.0856 -2.2388 1.4244 19 1 13.6999 -1.5376 0.8792 20 6 13.6633 -3.0871 2.3591 21 7 12.9146 -3.9412 3.0240 22 14 15.5033 -3.0163 2.6731 23 1 15.8731 -1.6576 3.1450 24 1 15.8676 -4.0165 3.7085 25 1 16.2322 -3.3188 1.4151 26 6 8.9761 -0.7086 -0.8961 27 6 4.6805 -0.1308 -1.2029 28 6 3.3045 -0.1369 -1.2022 29 1 -1.0500 0.0005 -0.0001 30 1 2.7643 0.2453 2.1312 31 1 5.2204 0.2461 2.1316 32 1 6.6714 -1.4357 -2.6429 33 1 5.7813 -1.9287 -1.1871 34 1 8.2936 -3.1369 -2.3786 35 1 6.7761 -3.9430 -1.9158 36 1 8.0632 -4.5342 -0.1021 37 1 7.4611 -2.9659 0.4901 38 1 11.5684 -1.5780 -0.7709 39 1 11.3047 -0.3593 0.4997 40 1 11.1848 -2.9198 1.6847 41 1 13.3184 -4.5342 3.6768 42 1 9.2713 0.3192 -0.6845 43 1 9.3133 -0.9849 -1.8950 44 1 5.2205 -0.2326 -2.1327 45 1 2.7645 -0.2435 -2.1313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201112851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:53 Heat of formation + Delta-G solvation = 32.101235 kcal Electronic energy + Delta-G solvation = -27524.580068 eV Core-core repulsion = 23702.711789 eV Total energy + Delta-G solvation = -3821.868279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01362 -39.37636 -38.18570 -35.77520 -34.56558 -34.22882 -32.84287 -31.55639 -31.02315 -30.81764 -28.71797 -26.72850 -25.62528 -24.18820 -23.07376 -22.53496 -21.68143 -20.90539 -19.73565 -19.42274 -17.82112 -17.12043 -16.65108 -16.40868 -16.24059 -15.88960 -15.42317 -15.38782 -14.55031 -14.48553 -14.19387 -14.05989 -13.85770 -13.60664 -13.48589 -13.14557 -13.00553 -12.70507 -12.45320 -12.29425 -12.01718 -11.85063 -11.68680 -11.47919 -11.29509 -10.96396 -10.89176 -10.77679 -10.73031 -10.25133 -10.08097 -9.90095 -9.63058 -9.43267 -9.38100 -8.94494 -8.78638 -8.57826 -6.80446 -5.65384 -2.93386 0.20061 0.93269 2.22381 2.27593 2.68860 2.93253 3.51211 3.54630 3.55648 3.56224 3.76303 3.98520 4.16526 4.40709 4.48921 4.59283 4.66680 4.73017 4.88141 4.95954 5.05175 5.09675 5.23588 5.25139 5.36362 5.45460 5.47744 5.51460 5.55587 5.62160 5.67316 5.83236 5.86546 5.92794 5.97392 5.99345 6.01660 6.12862 6.36391 6.37950 6.48790 6.70031 6.82478 7.05018 7.13312 7.77705 7.98448 8.04437 8.53018 9.64339 10.23238 10.59371 11.57523 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.002425 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.990486 B =11541.775548 C =11810.069231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.154 4.154 3 C 0.028 3.972 4 C -0.100 4.100 5 C -0.063 4.063 6 C -0.117 4.117 7 C 0.549 3.451 8 O -0.522 6.522 9 N -0.603 5.603 10 C 0.099 3.901 11 C -0.167 4.167 12 C 0.073 3.927 13 O -0.367 6.367 14 C 0.089 3.911 15 H 0.053 0.947 16 C 0.166 3.834 17 N -0.725 5.725 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.082 3.918 27 C -0.090 4.090 28 C -0.103 4.103 29 H 0.225 0.775 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.026 0.974 39 H 0.035 0.965 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.138 0.862 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.329 5.859 -11.880 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C 0.027 3.973 4 C -0.118 4.118 5 C -0.082 4.082 6 C -0.120 4.120 7 C 0.337 3.663 8 O -0.398 6.398 9 N -0.335 5.335 10 C -0.023 4.023 11 C -0.205 4.205 12 C -0.004 4.004 13 O -0.284 6.284 14 C 0.029 3.971 15 H 0.071 0.929 16 C 0.038 3.962 17 N -0.369 5.369 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.042 4.042 27 C -0.108 4.108 28 C -0.121 4.121 29 H 0.242 0.758 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.156 0.844 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.642 6.180 -11.554 28.796 hybrid contribution 0.276 -0.068 0.311 0.421 sum -25.366 6.112 -11.243 28.411 Atomic orbital electron populations 1.24947 0.95799 0.98690 0.99019 1.20017 0.92007 1.01770 1.01601 1.16151 0.86702 1.00481 0.93928 1.21178 0.93682 0.99546 0.97405 1.21185 0.93543 0.95605 0.97849 1.20086 0.93307 1.03934 0.94704 1.18448 0.87032 0.80681 0.80172 1.90847 1.69573 1.40628 1.38728 1.47842 1.07456 1.35295 1.42929 1.22348 0.95689 0.88847 0.95439 1.22529 1.01435 0.96087 1.00495 1.22104 0.84026 0.99438 0.94795 1.86443 1.26074 1.27615 1.88316 1.22268 0.97678 0.81601 0.95601 0.92945 1.20617 0.87153 0.94398 0.94041 1.42199 1.05939 1.43332 1.45455 1.19191 0.84262 1.15992 1.17380 0.91246 1.24738 0.97832 0.98992 0.99567 1.69667 1.34216 1.25275 1.28985 0.86255 0.85404 0.77035 0.77408 1.21324 1.21766 1.21333 1.22475 0.78039 1.02492 1.01156 1.21412 0.93972 0.97739 0.97674 1.21114 0.93648 1.00073 0.97292 0.75781 0.84797 0.84272 0.91314 0.89269 0.89857 0.89637 0.89252 0.93558 0.95605 0.94791 0.77862 0.93590 0.88828 0.89628 0.84420 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 19.25 29.55 0.57 -0.49 16 2 C -0.15 -1.29 13.23 -38.84 -0.51 -1.80 16 3 C 0.03 0.24 5.73 -106.87 -0.61 -0.37 16 4 C -0.10 -0.89 9.73 -39.26 -0.38 -1.27 16 5 C -0.06 -0.65 9.60 -39.25 -0.38 -1.03 16 6 C -0.12 -1.27 5.02 -104.91 -0.53 -1.80 16 7 C 0.55 7.58 7.26 -12.40 -0.09 7.49 16 8 O -0.52 -9.30 16.38 5.30 0.09 -9.21 16 9 N -0.60 -7.44 2.19 -173.63 -0.38 -7.82 16 10 C 0.10 0.87 4.54 -3.18 -0.01 0.86 16 11 C -0.17 -1.61 5.79 -27.17 -0.16 -1.77 16 12 C 0.07 0.99 6.37 36.42 0.23 1.22 16 13 O -0.37 -6.63 9.18 -26.53 -0.24 -6.87 16 14 C 0.09 1.61 2.73 -25.78 -0.07 1.54 16 15 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.17 3.59 5.95 -4.04 -0.02 3.57 16 17 N -0.72 -19.68 5.49 -59.91 -0.33 -20.00 16 18 C -0.24 -6.95 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -29.38 13.06 55.49 0.72 -28.66 16 22 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C 0.08 1.17 4.82 -3.83 -0.02 1.15 16 27 C -0.09 -0.73 7.43 -39.25 -0.29 -1.02 16 28 C -0.10 -0.79 9.73 -39.26 -0.38 -1.17 16 29 H 0.23 0.54 7.80 -54.09 -0.42 0.12 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.14 1.46 8.04 -52.48 -0.42 1.04 16 32 H 0.07 0.46 7.42 -51.93 -0.39 0.07 16 33 H 0.09 0.70 5.21 -51.93 -0.27 0.42 16 34 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.64 7.41 -51.93 -0.38 0.25 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.39 11.21 7.53 -40.82 -0.31 10.90 16 41 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.09 1.41 7.36 -51.93 -0.38 1.03 16 43 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 44 H 0.14 0.87 6.00 -52.49 -0.31 0.56 16 45 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -35.99 375.73 -8.64 -44.63 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.23 Total: 6.68 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.91 Total: -2.56 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.02 Total: -56.48 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.16 Total: -16.08 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.99 -8.64 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201112851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.729 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds