Wall clock time and date at job start Tue Mar 31 2020 14:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39717 * 119.99498 * 263.46470 * 3 2 1 5 5 C 1.37596 * 119.99858 * 180.02562 * 4 3 2 6 6 C 1.39745 * 120.00133 * 359.97438 * 5 4 3 7 7 C 1.47686 * 120.00631 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00176 * 321.52812 * 7 6 5 9 9 N 1.34779 * 119.99995 * 141.52255 * 7 6 5 10 10 C 1.47520 * 118.76920 * 354.22431 * 9 7 6 11 11 C 1.53578 * 111.01923 * 221.65338 * 10 9 7 12 12 C 1.51540 * 109.57887 * 39.96300 * 11 10 9 13 13 O 1.42148 * 108.75774 * 268.59520 * 12 11 10 14 14 C 1.38013 * 119.43735 * 87.23173 * 13 12 11 15 15 H 1.08997 * 109.47584 * 56.57838 * 14 13 12 16 16 C 1.53004 * 109.46838 * 176.57326 * 14 13 12 17 17 N 1.46495 * 109.47446 * 300.00459 * 16 14 13 18 18 C 1.36933 * 120.00348 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00259 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00249 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99996 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47236 * 60.00694 * 22 20 18 24 24 H 1.48501 * 109.47090 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47362 * 300.00303 * 22 20 18 26 26 C 1.45119 * 118.75929 * 174.21836 * 9 7 6 27 27 C 1.39745 * 119.98854 * 0.25410 * 6 5 4 28 28 C 1.37601 * 119.99947 * 359.50837 * 27 6 5 29 29 H 4.51955 * 14.06632 * 359.97438 * 4 2 1 30 30 H 1.07995 * 119.99597 * 359.97438 * 4 3 2 31 31 H 1.08006 * 120.00028 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.18607 * 101.25377 * 10 9 7 33 33 H 1.09000 * 109.15978 * 342.03816 * 10 9 7 34 34 H 1.08993 * 109.45353 * 279.93385 * 11 10 9 35 35 H 1.08996 * 109.45218 * 159.99566 * 11 10 9 36 36 H 1.08997 * 109.58971 * 148.81280 * 12 11 10 37 37 H 1.09000 * 109.71267 * 28.45312 * 12 11 10 38 38 H 1.09001 * 109.47008 * 60.00534 * 16 14 13 39 39 H 1.09003 * 109.46940 * 180.02562 * 16 14 13 40 40 H 0.97008 * 119.99716 * 359.97438 * 17 16 14 41 41 H 0.96997 * 120.00100 * 179.97438 * 21 20 18 42 42 H 1.09006 * 109.45830 * 330.67500 * 26 9 7 43 43 H 1.08994 * 109.46708 * 210.70220 * 26 9 7 44 44 H 1.08002 * 119.99895 * 179.72807 * 27 6 5 45 45 H 1.07996 * 120.00268 * 180.22725 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3045 0.1387 1.2022 5 6 4.6804 0.1398 1.2022 6 6 5.3793 0.0024 -0.0001 7 6 6.8562 0.0042 -0.0003 8 8 7.4633 0.7498 0.7437 9 7 7.5310 -0.8209 -0.8251 10 6 6.7729 -1.8040 -1.6220 11 6 7.4878 -3.1631 -1.6451 12 6 8.0625 -3.4579 -0.2743 13 8 9.3952 -2.9661 -0.2220 14 6 9.6204 -1.6551 0.1459 15 1 9.1789 -1.4715 1.1254 16 6 11.1268 -1.3946 0.2087 17 7 11.7366 -2.2902 1.1946 18 6 13.0856 -2.2388 1.4244 19 1 13.6999 -1.5376 0.8792 20 6 13.6633 -3.0871 2.3591 21 7 12.9146 -3.9412 3.0240 22 14 15.5033 -3.0163 2.6731 23 1 15.8731 -1.6576 3.1450 24 1 15.8676 -4.0165 3.7085 25 1 16.2322 -3.3188 1.4151 26 6 8.9761 -0.7086 -0.8961 27 6 4.6805 -0.1308 -1.2029 28 6 3.3045 -0.1369 -1.2022 29 1 -1.0500 0.0005 -0.0001 30 1 2.7643 0.2453 2.1312 31 1 5.2204 0.2461 2.1316 32 1 6.6714 -1.4357 -2.6429 33 1 5.7813 -1.9287 -1.1871 34 1 8.2936 -3.1369 -2.3786 35 1 6.7761 -3.9430 -1.9158 36 1 8.0632 -4.5342 -0.1021 37 1 7.4611 -2.9659 0.4901 38 1 11.5684 -1.5780 -0.7709 39 1 11.3047 -0.3593 0.4997 40 1 11.1848 -2.9198 1.6847 41 1 13.3184 -4.5342 3.6768 42 1 9.2713 0.3192 -0.6845 43 1 9.3133 -0.9849 -1.8950 44 1 5.2205 -0.2326 -2.1327 45 1 2.7645 -0.2435 -2.1313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201112851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:51 Heat of formation + Delta-G solvation = 9.046430 kcal Electronic energy + Delta-G solvation = -27525.579800 eV Core-core repulsion = 23702.711789 eV Total energy + Delta-G solvation = -3822.868010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.00644 -40.33464 -39.26276 -37.00784 -36.30344 -34.86770 -34.30542 -32.68293 -32.23837 -31.69827 -30.11146 -27.89689 -26.91485 -25.51017 -24.17783 -23.67827 -22.79859 -22.30951 -20.66239 -19.98518 -19.26010 -18.76513 -17.80106 -17.66176 -17.13075 -16.75680 -16.60300 -16.37155 -16.19140 -15.54417 -15.23503 -15.15642 -14.95153 -14.75578 -14.65084 -14.46231 -14.23141 -13.95093 -13.67585 -13.40507 -13.15705 -13.10769 -12.73424 -12.68142 -12.47957 -12.34318 -12.24821 -12.11175 -11.97049 -11.82525 -11.50381 -11.42374 -11.06108 -10.96756 -10.57965 -10.09026 -9.75372 -9.58031 -9.01574 -7.93975 -5.23977 -0.49964 0.28161 1.38655 1.46052 1.51075 1.56879 1.75833 1.76882 2.13054 2.56268 2.70248 2.90932 3.22546 3.37520 3.38963 3.60666 3.75197 3.83812 3.88096 3.98276 4.05900 4.09292 4.23315 4.27734 4.35937 4.40373 4.41908 4.51652 4.53783 4.65281 4.71356 4.79493 4.86624 4.89125 4.93498 5.07813 5.11320 5.16746 5.22413 5.28046 5.33611 5.45964 5.47419 5.73498 6.15849 6.26216 6.55555 6.72712 6.95876 7.32327 8.06902 8.32241 9.29829 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.002425 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.990486 B =11541.775548 C =11810.069231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.206 4.206 3 C 0.027 3.973 4 C -0.106 4.106 5 C -0.078 4.078 6 C -0.137 4.137 7 C 0.545 3.455 8 O -0.577 6.577 9 N -0.599 5.599 10 C 0.094 3.906 11 C -0.156 4.156 12 C 0.064 3.936 13 O -0.394 6.394 14 C 0.104 3.896 15 H 0.017 0.983 16 C 0.163 3.837 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.981 3.019 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.095 3.905 27 C -0.076 4.076 28 C -0.098 4.098 29 H 0.260 0.740 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.163 0.837 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.558 5.813 -14.779 32.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.206 4.206 3 C 0.027 3.973 4 C -0.123 4.123 5 C -0.097 4.097 6 C -0.140 4.140 7 C 0.335 3.665 8 O -0.457 6.457 9 N -0.330 5.330 10 C -0.027 4.027 11 C -0.194 4.194 12 C -0.012 4.012 13 O -0.313 6.313 14 C 0.043 3.957 15 H 0.035 0.965 16 C 0.036 3.964 17 N -0.383 5.383 18 C -0.380 4.380 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.809 3.191 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.200 1.200 26 C -0.029 4.029 27 C -0.094 4.094 28 C -0.116 4.116 29 H 0.276 0.724 30 H 0.162 0.838 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.129 0.871 44 H 0.180 0.820 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -27.902 6.140 -14.515 32.045 hybrid contribution 0.772 -0.077 1.204 1.432 sum -27.130 6.063 -13.311 30.822 Atomic orbital electron populations 1.25851 0.96550 0.95933 0.96676 1.20268 0.92485 1.04006 1.03837 1.16383 0.87498 0.99310 0.94104 1.21263 0.92940 0.99712 0.98430 1.21144 0.94322 0.96751 0.97452 1.19924 0.91401 1.06569 0.96090 1.18981 0.88332 0.79925 0.79242 1.90809 1.70892 1.43003 1.40985 1.47928 1.06633 1.35581 1.42856 1.22704 0.95501 0.87570 0.96893 1.22457 1.02017 0.97644 0.97305 1.22387 0.82082 0.99390 0.97365 1.86361 1.29112 1.27453 1.88407 1.21892 0.95347 0.83039 0.95393 0.96538 1.20768 0.89543 0.93237 0.92894 1.42410 1.05484 1.43877 1.46487 1.19664 0.85439 1.15757 1.17152 0.90323 1.25683 1.02851 0.98976 0.99704 1.69852 1.36217 1.26329 1.29817 0.85104 0.79468 0.77123 0.77391 1.20327 1.22028 1.20029 1.22183 0.79399 1.00595 1.00753 1.21596 0.94255 0.96305 0.97247 1.21421 0.93352 0.98810 0.97973 0.72366 0.83827 0.85950 0.87547 0.87855 0.90047 0.86128 0.88793 0.94612 0.94614 0.94798 0.79528 0.94014 0.89968 0.87120 0.81959 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 19.25 74.32 1.43 0.20 16 2 C -0.21 -2.96 13.23 30.01 0.40 -2.56 16 3 C 0.03 0.43 5.73 -21.32 -0.12 0.31 16 4 C -0.11 -1.86 9.73 22.48 0.22 -1.64 16 5 C -0.08 -1.70 9.60 22.48 0.22 -1.48 16 6 C -0.14 -2.95 5.02 -20.05 -0.10 -3.05 16 7 C 0.55 15.49 7.26 86.74 0.63 16.12 16 8 O -0.58 -22.06 16.38 -3.95 -0.06 -22.13 16 9 N -0.60 -14.38 2.19 -821.50 -1.80 -16.18 16 10 C 0.09 1.36 4.54 86.38 0.39 1.75 16 11 C -0.16 -2.58 5.79 30.31 0.18 -2.41 16 12 C 0.06 1.71 6.37 71.50 0.46 2.16 16 13 O -0.39 -14.62 9.18 -117.84 -1.08 -15.70 16 14 C 0.10 3.93 2.73 31.21 0.09 4.02 16 15 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 16 C 0.16 7.27 5.95 86.38 0.51 7.79 16 17 N -0.74 -41.73 5.49 -343.45 -1.88 -43.61 16 18 C -0.25 -14.87 9.99 84.03 0.84 -14.03 16 19 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 20 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 21 N -0.97 -63.01 13.06 21.65 0.28 -62.73 16 22 Si 0.98 48.28 29.55 68.60 2.03 50.31 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 24 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 26 C 0.09 2.72 4.82 87.26 0.42 3.14 16 27 C -0.08 -1.05 7.43 22.48 0.17 -0.88 16 28 C -0.10 -1.21 9.73 22.48 0.22 -0.99 16 29 H 0.26 0.07 7.80 -4.42 -0.03 0.03 16 30 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.12 2.95 8.04 -2.91 -0.02 2.93 16 32 H 0.11 0.86 7.42 -2.39 -0.02 0.84 16 33 H 0.10 1.27 5.21 -2.39 -0.01 1.26 16 34 H 0.08 1.45 8.01 -2.39 -0.02 1.43 16 35 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.04 1.02 7.41 -2.39 -0.02 1.00 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.37 22.74 7.53 -92.70 -0.70 22.04 16 41 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.08 2.56 7.36 -2.38 -0.02 2.54 16 43 H 0.11 2.62 8.11 -2.39 -0.02 2.60 16 44 H 0.16 1.37 6.00 -2.91 -0.02 1.36 16 45 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -82.73 375.73 4.19 -78.54 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.31 Total: 27.47 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 6.40 Total: 4.04 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -3.40 Total: -122.52 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -1.15 Total: -37.83 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -82.73 4.19 -78.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201112851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.585 kcal (2) G-P(sol) polarization free energy of solvation -82.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds