Wall clock time and date at job start Tue Mar 31 2020 14:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99855 * 22.06874 * 3 2 1 5 5 C 1.37593 * 120.00906 * 180.02562 * 4 3 2 6 6 C 1.39753 * 119.99204 * 359.97438 * 5 4 3 7 7 C 1.47687 * 120.00276 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99977 * 53.30955 * 7 6 5 9 9 N 1.34780 * 119.99819 * 233.31345 * 7 6 5 10 10 C 1.47507 * 118.75616 * 170.12082 * 9 7 6 11 11 C 1.53572 * 111.02805 * 138.37410 * 10 9 7 12 12 C 1.51535 * 109.57885 * 320.01888 * 11 10 9 13 13 O 1.42152 * 108.76162 * 91.40164 * 12 11 10 14 14 C 1.38016 * 119.43902 * 272.77543 * 13 12 11 15 15 H 1.09004 * 109.46967 * 303.42592 * 14 13 12 16 16 C 1.53001 * 109.47534 * 183.42743 * 14 13 12 17 17 N 1.46498 * 109.46834 * 65.00022 * 16 14 13 18 18 C 1.36933 * 120.00224 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00417 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99668 * 359.72789 * 20 18 17 22 22 Si 1.86804 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47274 * 269.72412 * 22 20 18 24 24 H 1.48495 * 109.46846 * 29.72892 * 22 20 18 25 25 H 1.48502 * 109.46564 * 149.72755 * 22 20 18 26 26 C 1.45117 * 118.75537 * 350.12199 * 9 7 6 27 27 C 1.39744 * 119.99479 * 0.25390 * 6 5 4 28 28 C 1.37604 * 119.99308 * 359.51758 * 27 6 5 29 29 H 4.51952 * 14.06428 * 0.02562 * 4 2 1 30 30 H 1.08005 * 119.99735 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.00750 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.16685 * 17.97048 * 10 9 7 33 33 H 1.09009 * 109.12180 * 258.74602 * 10 9 7 34 34 H 1.08999 * 109.45124 * 199.98886 * 11 10 9 35 35 H 1.09001 * 109.43548 * 80.03996 * 11 10 9 36 36 H 1.09004 * 109.58901 * 331.61869 * 12 11 10 37 37 H 1.09000 * 109.58911 * 211.18420 * 12 11 10 38 38 H 1.09000 * 109.47029 * 305.00297 * 16 14 13 39 39 H 1.08999 * 109.47313 * 185.00139 * 16 14 13 40 40 H 0.97005 * 119.99992 * 0.02562 * 17 16 14 41 41 H 0.96997 * 120.00198 * 0.27282 * 21 20 18 42 42 H 1.09001 * 109.45762 * 149.27298 * 26 9 7 43 43 H 1.08998 * 109.46584 * 29.30516 * 26 9 7 44 44 H 1.07998 * 120.00090 * 179.74194 * 27 6 5 45 45 H 1.08000 * 119.99609 * 180.22929 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3050 -1.1204 -0.4546 5 6 4.6809 -1.1202 -0.4542 6 6 5.3792 0.0017 0.0005 7 6 6.8561 0.0020 0.0016 8 8 7.4647 -0.2642 -1.0166 9 7 7.5291 0.2971 1.1314 10 6 8.9872 0.0771 1.1669 11 6 9.7026 1.2372 1.8745 12 6 9.0619 2.5501 1.4718 13 8 8.0329 2.8610 2.4020 14 6 6.7611 2.3657 2.1974 15 1 6.4030 2.6782 1.2164 16 6 5.8231 2.9062 3.2786 17 7 5.7006 4.3592 3.1369 18 6 4.9078 5.0670 4.0003 19 1 4.3730 4.5540 4.7861 20 6 4.7921 6.4437 3.8664 21 7 5.4488 7.0696 2.9128 22 14 3.7099 7.4091 5.0439 23 1 2.3334 7.4953 4.4934 24 1 3.6746 6.7220 6.3599 25 1 4.2615 8.7772 5.2143 26 6 6.7918 0.8194 2.2669 27 6 4.6800 1.1211 0.4597 28 6 3.3039 1.1223 0.4547 29 1 -1.0501 -0.0007 -0.0008 30 1 2.7653 -1.9872 -0.8064 31 1 5.2213 -1.9869 -0.8052 32 1 9.3617 -0.0053 0.1465 33 1 9.1955 -0.8505 1.7003 34 1 10.7543 1.2438 1.5883 35 1 9.6208 1.1094 2.9539 36 1 8.6356 2.4575 0.4728 37 1 9.8124 3.3405 1.4793 38 1 6.2284 2.6700 4.2624 39 1 4.8407 2.4465 3.1704 40 1 6.1812 4.8199 2.4314 41 1 6.0104 6.5683 2.3011 42 1 7.2788 0.5072 3.1908 43 1 5.7722 0.4347 2.2460 44 1 5.2195 1.9865 0.8150 45 1 2.7635 1.9888 0.8061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201112862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:56 Heat of formation + Delta-G solvation = 37.046042 kcal Electronic energy + Delta-G solvation = -28358.502204 eV Core-core repulsion = 24536.848348 eV Total energy + Delta-G solvation = -3821.653856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.11460 -39.20320 -38.39586 -35.51739 -35.15305 -34.12389 -33.23857 -31.27085 -31.12670 -30.38952 -28.75959 -26.81760 -25.26568 -24.20373 -23.03334 -22.70348 -21.64121 -21.23050 -19.63337 -19.23559 -17.68331 -17.42074 -17.09977 -16.67870 -16.12112 -15.80539 -15.43080 -15.27021 -14.81496 -14.26070 -14.14629 -14.01817 -13.70092 -13.57615 -13.41895 -13.30079 -13.14312 -12.71465 -12.54609 -12.41630 -12.18998 -11.89671 -11.56546 -11.45879 -11.26685 -10.95620 -10.71969 -10.67694 -10.56937 -10.33200 -10.04665 -10.01241 -9.51555 -9.22884 -9.19867 -8.89312 -8.73964 -8.66814 -6.99833 -6.08541 -3.08433 0.44410 1.16962 2.31315 2.53927 2.68248 2.91801 3.52381 3.57403 3.71416 3.75924 3.77782 4.01261 4.22480 4.59401 4.63494 4.70426 4.73051 4.77166 4.90648 4.99602 5.01580 5.11090 5.20341 5.30831 5.34610 5.39886 5.50322 5.58381 5.62253 5.64282 5.71247 5.73999 5.82177 5.90758 6.00701 6.01274 6.10510 6.14082 6.24030 6.30560 6.42186 6.58135 6.63110 7.09489 7.31158 7.78727 7.82016 7.90139 8.77966 9.23747 10.10421 10.25170 11.40053 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.004751 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.998044 B = 5892.635276 C = 8839.165162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.153 4.153 3 C 0.028 3.972 4 C -0.102 4.102 5 C -0.073 4.073 6 C -0.121 4.121 7 C 0.559 3.441 8 O -0.534 6.534 9 N -0.603 5.603 10 C 0.109 3.891 11 C -0.165 4.165 12 C 0.071 3.929 13 O -0.366 6.366 14 C 0.077 3.923 15 H 0.055 0.945 16 C 0.169 3.831 17 N -0.737 5.737 18 C -0.332 4.332 19 H 0.065 0.935 20 C -0.043 4.043 21 N -0.943 5.943 22 Si 1.082 2.918 23 H -0.296 1.296 24 H -0.295 1.295 25 H -0.288 1.288 26 C 0.065 3.935 27 C -0.100 4.100 28 C -0.091 4.091 29 H 0.225 0.775 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.032 0.968 39 H 0.036 0.964 40 H 0.370 0.630 41 H 0.256 0.744 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.151 0.849 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 -18.921 -4.996 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.153 4.153 3 C 0.027 3.973 4 C -0.120 4.120 5 C -0.091 4.091 6 C -0.124 4.124 7 C 0.347 3.653 8 O -0.411 6.411 9 N -0.336 5.336 10 C -0.012 4.012 11 C -0.203 4.203 12 C -0.005 4.005 13 O -0.284 6.284 14 C 0.018 3.982 15 H 0.072 0.928 16 C 0.040 3.960 17 N -0.382 5.382 18 C -0.463 4.463 19 H 0.083 0.917 20 C -0.241 4.241 21 N -0.588 5.588 22 Si 0.913 3.087 23 H -0.223 1.223 24 H -0.222 1.222 25 H -0.214 1.214 26 C -0.059 4.059 27 C -0.118 4.118 28 C -0.108 4.108 29 H 0.242 0.758 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.203 0.797 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.168 0.832 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.037 -17.562 -4.776 18.200 hybrid contribution 0.465 -1.650 -0.743 1.869 sum 0.428 -19.212 -5.519 19.994 Atomic orbital electron populations 1.24917 0.95778 0.99023 0.98751 1.19996 0.92002 1.01568 1.01708 1.16171 0.86776 0.94705 0.99600 1.21083 0.93563 0.97664 0.99708 1.20961 0.93586 0.97334 0.97238 1.19955 0.92861 0.96453 1.03148 1.18513 0.87311 0.76340 0.83099 1.90773 1.69656 1.48990 1.31691 1.47829 1.08159 1.64011 1.13569 1.21879 0.78503 0.97959 1.02860 1.22486 1.00299 0.95329 1.02194 1.22184 0.90022 0.95957 0.92387 1.86447 1.17434 1.74023 1.50538 1.22653 0.84663 0.91050 0.99873 0.92773 1.20591 0.93819 0.86790 0.94778 1.42225 1.57127 1.00875 1.38021 1.20025 1.23226 0.92505 1.10547 0.91713 1.25747 1.02547 0.93669 1.02136 1.70831 1.31573 1.37642 1.18776 0.83207 0.75212 0.75882 0.74384 1.22345 1.22154 1.21402 1.22755 0.98217 0.95586 0.89327 1.22014 0.94616 0.98422 0.96750 1.21286 0.93789 0.97694 0.98073 0.75784 0.84997 0.84929 0.88892 0.91471 0.89555 0.90019 0.93202 0.89034 0.95065 0.94603 0.79664 0.93285 0.89079 0.88635 0.83201 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.15 -1.81 13.23 -38.84 -0.51 -2.33 16 3 C 0.03 0.34 5.73 -106.87 -0.61 -0.27 16 4 C -0.10 -1.10 9.73 -39.27 -0.38 -1.49 16 5 C -0.07 -0.83 9.74 -39.25 -0.38 -1.21 16 6 C -0.12 -1.60 4.84 -104.91 -0.51 -2.11 16 7 C 0.56 7.99 7.12 -12.40 -0.09 7.90 16 8 O -0.53 -8.99 16.37 5.31 0.09 -8.91 16 9 N -0.60 -7.63 2.19 -173.64 -0.38 -8.01 16 10 C 0.11 1.19 6.21 -3.19 -0.02 1.17 16 11 C -0.16 -1.72 5.79 -27.18 -0.16 -1.87 16 12 C 0.07 0.95 6.37 36.42 0.23 1.18 16 13 O -0.37 -6.17 9.38 -26.54 -0.25 -6.42 16 14 C 0.08 1.23 1.72 -25.78 -0.04 1.19 16 15 H 0.06 0.92 5.66 -51.93 -0.29 0.62 16 16 C 0.17 3.26 5.83 -4.04 -0.02 3.23 16 17 N -0.74 -18.35 5.54 -59.91 -0.33 -18.68 16 18 C -0.33 -9.27 9.99 -15.06 -0.15 -9.42 16 19 H 0.06 1.77 7.83 -52.48 -0.41 1.36 16 20 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 21 N -0.94 -29.21 13.70 55.49 0.76 -28.45 16 22 Si 1.08 25.86 29.92 -169.99 -5.09 20.77 16 23 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.07 0.83 4.41 -3.83 -0.02 0.81 16 27 C -0.10 -1.36 7.53 -39.25 -0.30 -1.65 16 28 C -0.09 -1.19 9.73 -39.26 -0.38 -1.57 16 29 H 0.23 1.24 7.80 -54.09 -0.42 0.82 16 30 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.09 1.08 6.93 -51.93 -0.36 0.72 16 33 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 36 H 0.05 0.70 7.40 -51.93 -0.38 0.32 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.37 9.65 6.49 -40.82 -0.26 9.38 16 41 H 0.26 7.86 6.77 -40.82 -0.28 7.58 16 42 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 43 H 0.10 1.16 5.46 -51.93 -0.28 0.87 16 44 H 0.15 2.20 3.48 -52.49 -0.18 2.01 16 45 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -34.35 369.96 -8.39 -42.74 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.89 Total: 10.21 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.87 Total: -8.84 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.05 Total: -55.14 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.16 Total: -15.32 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.09 Total: 20.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.35 -8.39 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201112862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.781 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds