Wall clock time and date at job start Tue Mar 31 2020 14:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99855 * 22.06874 * 3 2 1 5 5 C 1.37593 * 120.00906 * 180.02562 * 4 3 2 6 6 C 1.39753 * 119.99204 * 359.97438 * 5 4 3 7 7 C 1.47687 * 120.00276 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99977 * 53.30955 * 7 6 5 9 9 N 1.34780 * 119.99819 * 233.31345 * 7 6 5 10 10 C 1.47507 * 118.75616 * 170.12082 * 9 7 6 11 11 C 1.53572 * 111.02805 * 138.37410 * 10 9 7 12 12 C 1.51535 * 109.57885 * 320.01888 * 11 10 9 13 13 O 1.42152 * 108.76162 * 91.40164 * 12 11 10 14 14 C 1.38016 * 119.43902 * 272.77543 * 13 12 11 15 15 H 1.09004 * 109.46967 * 303.42592 * 14 13 12 16 16 C 1.53001 * 109.47534 * 183.42743 * 14 13 12 17 17 N 1.46498 * 109.46834 * 65.00022 * 16 14 13 18 18 C 1.36933 * 120.00224 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00417 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99668 * 359.72789 * 20 18 17 22 22 Si 1.86804 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47274 * 269.72412 * 22 20 18 24 24 H 1.48495 * 109.46846 * 29.72892 * 22 20 18 25 25 H 1.48502 * 109.46564 * 149.72755 * 22 20 18 26 26 C 1.45117 * 118.75537 * 350.12199 * 9 7 6 27 27 C 1.39744 * 119.99479 * 0.25390 * 6 5 4 28 28 C 1.37604 * 119.99308 * 359.51758 * 27 6 5 29 29 H 4.51952 * 14.06428 * 0.02562 * 4 2 1 30 30 H 1.08005 * 119.99735 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.00750 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.16685 * 17.97048 * 10 9 7 33 33 H 1.09009 * 109.12180 * 258.74602 * 10 9 7 34 34 H 1.08999 * 109.45124 * 199.98886 * 11 10 9 35 35 H 1.09001 * 109.43548 * 80.03996 * 11 10 9 36 36 H 1.09004 * 109.58901 * 331.61869 * 12 11 10 37 37 H 1.09000 * 109.58911 * 211.18420 * 12 11 10 38 38 H 1.09000 * 109.47029 * 305.00297 * 16 14 13 39 39 H 1.08999 * 109.47313 * 185.00139 * 16 14 13 40 40 H 0.97005 * 119.99992 * 0.02562 * 17 16 14 41 41 H 0.96997 * 120.00198 * 0.27282 * 21 20 18 42 42 H 1.09001 * 109.45762 * 149.27298 * 26 9 7 43 43 H 1.08998 * 109.46584 * 29.30516 * 26 9 7 44 44 H 1.07998 * 120.00090 * 179.74194 * 27 6 5 45 45 H 1.08000 * 119.99609 * 180.22929 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3050 -1.1204 -0.4546 5 6 4.6809 -1.1202 -0.4542 6 6 5.3792 0.0017 0.0005 7 6 6.8561 0.0020 0.0016 8 8 7.4647 -0.2642 -1.0166 9 7 7.5291 0.2971 1.1314 10 6 8.9872 0.0771 1.1669 11 6 9.7026 1.2372 1.8745 12 6 9.0619 2.5501 1.4718 13 8 8.0329 2.8610 2.4020 14 6 6.7611 2.3657 2.1974 15 1 6.4030 2.6782 1.2164 16 6 5.8231 2.9062 3.2786 17 7 5.7006 4.3592 3.1369 18 6 4.9078 5.0670 4.0003 19 1 4.3730 4.5540 4.7861 20 6 4.7921 6.4437 3.8664 21 7 5.4488 7.0696 2.9128 22 14 3.7099 7.4091 5.0439 23 1 2.3334 7.4953 4.4934 24 1 3.6746 6.7220 6.3599 25 1 4.2615 8.7772 5.2143 26 6 6.7918 0.8194 2.2669 27 6 4.6800 1.1211 0.4597 28 6 3.3039 1.1223 0.4547 29 1 -1.0501 -0.0007 -0.0008 30 1 2.7653 -1.9872 -0.8064 31 1 5.2213 -1.9869 -0.8052 32 1 9.3617 -0.0053 0.1465 33 1 9.1955 -0.8505 1.7003 34 1 10.7543 1.2438 1.5883 35 1 9.6208 1.1094 2.9539 36 1 8.6356 2.4575 0.4728 37 1 9.8124 3.3405 1.4793 38 1 6.2284 2.6700 4.2624 39 1 4.8407 2.4465 3.1704 40 1 6.1812 4.8199 2.4314 41 1 6.0104 6.5683 2.3011 42 1 7.2788 0.5072 3.1908 43 1 5.7722 0.4347 2.2460 44 1 5.2195 1.9865 0.8150 45 1 2.7635 1.9888 0.8061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201112862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:55 Heat of formation + Delta-G solvation = 16.264851 kcal Electronic energy + Delta-G solvation = -28359.403344 eV Core-core repulsion = 24536.848348 eV Total energy + Delta-G solvation = -3822.554996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.20071 -40.27900 -39.51617 -37.01125 -36.49960 -35.22668 -34.43769 -32.79732 -32.21005 -31.38077 -30.19839 -27.90757 -26.73679 -25.40962 -24.60539 -23.88583 -22.84539 -22.38054 -20.66949 -20.10237 -19.40094 -18.72822 -18.30124 -17.81757 -17.37692 -16.81616 -16.64279 -16.38909 -15.92376 -15.73288 -15.55962 -15.24540 -15.03727 -14.90566 -14.53756 -14.47652 -14.27366 -14.05898 -13.77557 -13.44228 -13.29968 -13.06986 -12.70559 -12.58427 -12.52567 -12.41645 -12.16610 -12.03789 -11.86136 -11.64445 -11.43141 -11.26367 -11.16803 -10.95235 -10.66382 -10.17046 -9.81144 -9.64696 -9.09856 -8.37179 -5.30921 -0.50401 0.21734 1.26027 1.59939 1.69994 1.71093 1.72776 1.84906 1.97064 2.57158 2.72904 2.84364 3.13972 3.28464 3.43876 3.49425 3.62271 3.77084 3.79451 3.85378 3.95132 3.96614 4.16054 4.16679 4.21662 4.28924 4.36940 4.39457 4.50651 4.57470 4.66772 4.74823 4.78564 4.81914 4.87851 4.98084 5.01309 5.11356 5.17073 5.23817 5.30341 5.34076 5.60098 5.68185 6.02830 6.50748 6.52361 6.58787 6.81500 7.10199 8.00330 8.12468 9.14557 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.004751 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.998044 B = 5892.635276 C = 8839.165162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.210 4.210 3 C 0.027 3.973 4 C -0.095 4.095 5 C -0.067 4.067 6 C -0.135 4.135 7 C 0.558 3.442 8 O -0.564 6.564 9 N -0.599 5.599 10 C 0.106 3.894 11 C -0.153 4.153 12 C 0.066 3.934 13 O -0.394 6.394 14 C 0.089 3.911 15 H 0.040 0.960 16 C 0.168 3.832 17 N -0.751 5.751 18 C -0.331 4.331 19 H 0.070 0.930 20 C -0.104 4.104 21 N -0.976 5.976 22 Si 1.130 2.870 23 H -0.284 1.284 24 H -0.271 1.271 25 H -0.295 1.295 26 C 0.079 3.921 27 C -0.106 4.106 28 C -0.106 4.106 29 H 0.263 0.737 30 H 0.160 0.840 31 H 0.150 0.850 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.030 0.970 39 H 0.048 0.952 40 H 0.360 0.640 41 H 0.242 0.758 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 -21.162 -4.273 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.210 4.210 3 C 0.027 3.973 4 C -0.113 4.113 5 C -0.086 4.086 6 C -0.138 4.138 7 C 0.348 3.652 8 O -0.444 6.444 9 N -0.330 5.330 10 C -0.015 4.015 11 C -0.191 4.191 12 C -0.010 4.010 13 O -0.313 6.313 14 C 0.029 3.971 15 H 0.058 0.942 16 C 0.041 3.959 17 N -0.395 5.395 18 C -0.462 4.462 19 H 0.088 0.912 20 C -0.295 4.295 21 N -0.624 5.624 22 Si 0.955 3.045 23 H -0.210 1.210 24 H -0.197 1.197 25 H -0.222 1.222 26 C -0.045 4.045 27 C -0.124 4.124 28 C -0.124 4.124 29 H 0.279 0.721 30 H 0.178 0.822 31 H 0.168 0.832 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.191 0.809 41 H 0.052 0.948 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.152 0.848 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.026 -19.863 -4.031 20.293 hybrid contribution 0.716 -1.017 -1.002 1.597 sum -0.310 -20.879 -5.034 21.479 Atomic orbital electron populations 1.25879 0.96554 0.96456 0.95916 1.20310 0.92579 1.03970 1.04106 1.16336 0.87583 0.94570 0.98801 1.21370 0.93314 0.97988 0.98598 1.21195 0.93970 0.97184 0.96207 1.19959 0.92391 0.97082 1.04354 1.18694 0.87738 0.75835 0.82975 1.90752 1.70304 1.50694 1.32635 1.47881 1.09007 1.63068 1.13027 1.22067 0.77252 0.99221 1.02935 1.22408 1.01452 0.93048 1.02161 1.22369 0.89302 0.98110 0.91178 1.86376 1.18052 1.75101 1.51733 1.22393 0.83898 0.93093 0.97680 0.94243 1.20721 0.95373 0.83943 0.95873 1.42430 1.56659 1.03100 1.37312 1.20408 1.22490 0.92955 1.10336 0.91166 1.27198 1.03739 0.95387 1.03184 1.70953 1.33389 1.37840 1.20234 0.82600 0.74005 0.74323 0.73601 1.21042 1.19656 1.22201 1.22571 0.99075 0.92908 0.89981 1.21812 0.94730 0.98189 0.97655 1.21247 0.93690 0.98178 0.99313 0.72072 0.82237 0.83222 0.89621 0.88964 0.86748 0.89748 0.94556 0.88396 0.95186 0.93385 0.80854 0.94757 0.87372 0.87914 0.84830 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 19.25 74.32 1.43 -0.76 16 2 C -0.21 -4.71 13.23 30.02 0.40 -4.31 16 3 C 0.03 0.66 5.73 -21.32 -0.12 0.54 16 4 C -0.10 -1.91 9.73 22.47 0.22 -1.69 16 5 C -0.07 -1.46 9.74 22.48 0.22 -1.24 16 6 C -0.13 -3.55 4.84 -20.05 -0.10 -3.64 16 7 C 0.56 15.85 7.12 86.74 0.62 16.47 16 8 O -0.56 -18.98 16.37 -3.93 -0.06 -19.05 16 9 N -0.60 -14.68 2.19 -821.53 -1.80 -16.48 16 10 C 0.11 2.12 6.21 86.38 0.54 2.66 16 11 C -0.15 -2.90 5.79 30.31 0.18 -2.73 16 12 C 0.07 1.77 6.37 71.50 0.46 2.22 16 13 O -0.39 -13.43 9.38 -117.88 -1.11 -14.54 16 14 C 0.09 2.89 1.72 31.21 0.05 2.95 16 15 H 0.04 1.42 5.66 -2.38 -0.01 1.41 16 16 C 0.17 6.58 5.83 86.38 0.50 7.08 16 17 N -0.75 -38.40 5.54 -343.46 -1.90 -40.30 16 18 C -0.33 -18.64 9.99 84.03 0.84 -17.81 16 19 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.10 -6.09 5.50 84.86 0.47 -5.62 16 21 N -0.98 -62.11 13.70 21.65 0.30 -61.81 16 22 Si 1.13 52.12 29.92 68.60 2.05 54.17 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 26 C 0.08 1.95 4.41 87.26 0.38 2.33 16 27 C -0.11 -2.96 7.53 22.48 0.17 -2.79 16 28 C -0.11 -2.89 9.73 22.48 0.22 -2.67 16 29 H 0.26 1.82 7.80 -4.41 -0.03 1.79 16 30 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.09 1.89 6.93 -2.39 -0.02 1.88 16 33 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.62 8.01 -2.39 -0.02 1.60 16 36 H 0.04 1.05 7.40 -2.39 -0.02 1.04 16 37 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.36 19.64 6.49 -92.70 -0.60 19.04 16 41 H 0.24 15.53 6.77 -92.71 -0.63 14.90 16 42 H 0.11 2.34 8.11 -2.39 -0.02 2.32 16 43 H 0.10 2.43 5.46 -2.39 -0.01 2.41 16 44 H 0.13 4.16 3.48 -2.91 -0.01 4.15 16 45 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -75.90 369.96 4.50 -71.39 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.56 Total: 35.62 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 6.47 Total: -9.01 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -3.40 Total: -118.59 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.17 Total: -33.59 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.17 kcal Total: -75.90 4.50 -71.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201112862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.658 kcal (2) G-P(sol) polarization free energy of solvation -75.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds