Wall clock time and date at job start Tue Mar 31 2020 16:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99873 * 2 1 4 4 H 1.09001 * 110.35194 * 30.69211 * 3 2 1 5 5 C 1.53994 * 110.31098 * 268.54849 * 3 2 1 6 6 N 1.47902 * 107.05838 * 242.31090 * 5 3 2 7 7 C 1.46904 * 110.99747 * 214.15587 * 6 5 3 8 8 C 1.50703 * 109.46929 * 69.87519 * 7 6 5 9 9 C 1.31002 * 119.99772 * 125.68244 * 8 7 6 10 10 C 1.50698 * 120.00040 * 5.52011 * 9 8 7 11 11 C 1.50699 * 119.99907 * 185.51804 * 9 8 7 12 12 C 1.48531 * 105.81993 * 334.66988 * 6 5 3 13 13 C 1.54601 * 110.30527 * 152.83553 * 3 2 1 14 14 H 1.08996 * 110.72586 * 22.51298 * 13 3 2 15 15 N 1.46502 * 110.72116 * 259.40883 * 13 3 2 16 16 C 1.34776 * 120.00077 * 155.00209 * 15 13 3 17 17 O 1.21290 * 119.99921 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00313 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.47250 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00006 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00135 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99726 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00197 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99782 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46925 * 60.00372 * 24 22 20 26 26 H 1.48502 * 109.47253 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47279 * 300.00396 * 24 22 20 28 28 H 1.09005 * 109.46734 * 299.99922 * 1 2 3 29 29 H 1.09001 * 109.47610 * 59.99194 * 1 2 3 30 30 H 1.08997 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.91669 * 122.95933 * 5 3 2 32 32 H 1.09002 * 109.91779 * 1.66639 * 5 3 2 33 33 H 1.09002 * 109.46941 * 189.87251 * 7 6 5 34 34 H 1.08998 * 109.46985 * 309.87560 * 7 6 5 35 35 H 1.07992 * 119.99885 * 305.67764 * 8 7 6 36 36 H 1.09001 * 109.47503 * 54.87801 * 10 9 8 37 37 H 1.08999 * 109.47537 * 174.87778 * 10 9 8 38 38 H 1.09003 * 109.47220 * 294.87684 * 10 9 8 39 39 H 1.08997 * 109.46871 * 89.99997 * 11 9 8 40 40 H 1.08999 * 109.47104 * 209.99705 * 11 9 8 41 41 H 1.09000 * 109.47099 * 330.00021 * 11 9 8 42 42 H 1.09002 * 110.66652 * 157.64177 * 12 6 5 43 43 H 1.08999 * 110.66605 * 280.77037 * 12 6 5 44 44 H 0.97001 * 119.99842 * 335.00267 * 15 13 3 45 45 H 1.08995 * 109.46952 * 300.00248 * 18 16 15 46 46 H 1.08997 * 109.47066 * 60.00278 * 18 16 15 47 47 H 0.97009 * 120.00106 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3615 2.0092 0.5216 5 6 2.2610 1.7789 -1.4437 6 7 3.7204 1.9685 -1.5908 7 6 4.0174 3.0884 -2.4939 8 6 3.6359 4.3855 -1.8281 9 6 4.5176 5.3477 -1.7149 10 6 5.8729 5.2074 -2.3586 11 6 4.1764 6.5950 -0.9410 12 6 4.2337 2.2371 -0.2231 13 6 3.4069 1.2710 0.6620 14 1 3.8246 0.2647 0.6290 15 7 3.3384 1.7569 2.0424 16 6 4.2614 1.3630 2.9420 17 8 5.1485 0.6058 2.6089 18 6 4.1907 1.8623 4.3621 19 16 5.5586 1.1604 5.3173 20 6 5.2402 1.8901 6.8891 21 1 4.3949 2.5501 7.0169 22 6 6.0753 1.6160 7.9634 23 7 7.1052 0.8113 7.8078 24 14 5.7374 2.3891 9.6300 25 1 4.3933 1.9732 10.1052 26 1 6.7670 1.9406 10.6017 27 1 5.7835 3.8684 9.5081 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7444 2.7224 -1.6201 32 1 1.9118 1.0239 -2.1481 33 1 5.0830 3.0975 -2.7233 34 1 3.4482 2.9722 -3.4162 35 1 2.6357 4.5216 -1.4444 36 1 5.7505 4.9948 -3.4207 37 1 6.4313 6.1354 -2.2360 38 1 6.4173 4.3905 -1.8849 39 1 4.4570 6.4624 0.1038 40 1 4.7208 7.4420 -1.3586 41 1 3.1049 6.7828 -1.0085 42 1 5.2965 2.0038 -0.1583 43 1 4.0482 3.2730 0.0609 44 1 2.6288 2.3621 2.3088 45 1 4.2638 2.9498 4.3688 46 1 3.2431 1.5590 4.8071 47 1 7.6890 0.6200 8.5585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211885986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:01 Heat of formation + Delta-G solvation = -59.048716 kcal Electronic energy + Delta-G solvation = -25995.035899 eV Core-core repulsion = 22304.659013 eV Total energy + Delta-G solvation = -3690.376886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.36790 -38.71257 -37.77393 -36.05108 -34.17090 -32.42348 -31.17597 -29.43962 -28.39169 -28.06489 -27.44792 -26.50529 -25.47060 -24.06276 -21.36860 -21.18021 -20.37614 -18.31744 -17.89974 -17.17201 -16.88279 -16.14574 -15.67639 -15.28141 -15.14325 -15.06230 -14.80193 -14.77479 -14.45125 -14.26714 -14.01228 -13.53572 -13.31793 -13.08351 -12.95013 -12.71941 -12.56953 -12.50481 -12.32315 -12.12405 -11.95195 -11.78724 -11.62726 -11.51572 -11.23690 -11.04380 -11.03703 -10.91217 -10.76953 -9.99199 -9.81094 -9.39814 -9.06054 -9.04113 -8.92074 -8.62910 -8.22954 -6.48988 -6.20780 -3.91380 1.79243 2.93586 3.08124 3.23578 3.25683 3.29229 3.46804 3.61983 3.98667 4.20965 4.32383 4.42442 4.50664 4.60755 4.70082 4.91863 4.95669 5.04125 5.08725 5.14053 5.14401 5.17814 5.24022 5.24342 5.28104 5.35153 5.42521 5.44235 5.47189 5.55306 5.60045 5.65295 5.68719 5.77307 5.84940 5.89494 5.99648 6.13276 6.27590 6.42121 6.54466 6.67586 6.78655 6.96293 7.59557 7.67033 8.35440 8.61029 9.24224 10.86547 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002855 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.770939 B = 9805.883412 C =11248.891958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.073 3.927 4 H 0.071 0.929 5 C 0.015 3.985 6 N -0.501 5.501 7 C 0.072 3.928 8 C -0.211 4.211 9 C -0.112 4.112 10 C -0.123 4.123 11 C -0.121 4.121 12 C 0.026 3.974 13 C 0.148 3.852 14 H 0.116 0.884 15 N -0.731 5.731 16 C 0.535 3.465 17 O -0.511 6.511 18 C -0.153 4.153 19 S -0.057 6.057 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.396 0.604 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 8.690 -21.849 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.014 3.986 4 H 0.089 0.911 5 C -0.114 4.114 6 N -0.224 5.224 7 C -0.056 4.056 8 C -0.230 4.230 9 C -0.113 4.113 10 C -0.179 4.179 11 C -0.178 4.178 12 C -0.103 4.103 13 C 0.041 3.959 14 H 0.134 0.866 15 N -0.385 5.385 16 C 0.321 3.679 17 O -0.384 6.384 18 C -0.304 4.304 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.229 0.771 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.845 6.661 -22.548 25.892 hybrid contribution -2.371 2.754 1.929 4.114 sum -13.216 9.415 -20.619 26.239 Atomic orbital electron populations 1.22822 0.81082 1.03051 0.99794 1.88043 1.19553 1.26393 1.94773 1.23221 0.94791 0.85498 0.95120 0.91119 1.23401 0.90104 1.00792 0.97112 1.65036 1.10206 1.38080 1.09041 1.21498 1.02519 0.85878 0.95692 1.23175 0.99262 0.96538 1.04051 1.21688 0.95976 0.96071 0.97580 1.20903 0.94223 1.02624 1.00184 1.20903 1.01518 0.95394 0.99940 1.23648 1.01005 0.98344 0.87303 1.21766 0.93104 1.00320 0.80696 0.86622 1.45962 1.31873 1.51269 1.09421 1.20320 0.80858 0.80146 0.86590 1.90718 1.33851 1.33999 1.79804 1.23530 1.07380 1.04558 0.94910 1.85419 1.30540 1.62374 1.04720 1.22830 1.16356 1.33812 0.95549 0.91017 1.24982 0.94476 0.95032 0.99030 1.70006 1.14516 1.33627 1.32086 0.86235 0.78171 0.79402 0.81747 1.19947 1.20796 1.19960 0.93960 0.94138 0.89385 0.92871 0.89128 0.89331 0.90241 0.87648 0.91407 0.91952 0.91001 0.91036 0.91841 0.92103 0.88873 0.92123 0.77055 0.89280 0.89239 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.87 101.05 1.10 1.33 16 2 O -0.37 -4.35 10.29 -35.23 -0.36 -4.71 16 3 C 0.07 0.76 3.19 -25.37 -0.08 0.68 16 4 H 0.07 0.60 7.46 -51.93 -0.39 0.21 16 5 C 0.01 0.13 6.27 -2.75 -0.02 0.12 16 6 N -0.50 -5.29 5.54 -231.89 -1.28 -6.58 16 7 C 0.07 0.62 5.68 -4.97 -0.03 0.59 16 8 C -0.21 -1.75 6.45 -36.03 -0.23 -1.99 16 9 C -0.11 -0.92 6.05 -101.07 -0.61 -1.53 16 10 C -0.12 -0.92 8.55 36.00 0.31 -0.61 16 11 C -0.12 -0.90 9.98 36.01 0.36 -0.54 16 12 C 0.03 0.31 6.01 -1.90 -0.01 0.30 16 13 C 0.15 1.94 3.16 -66.07 -0.21 1.74 16 14 H 0.12 1.91 7.49 -51.93 -0.39 1.53 16 15 N -0.73 -10.06 5.18 -52.00 -0.27 -10.33 16 16 C 0.53 10.08 7.85 -10.99 -0.09 9.99 16 17 O -0.51 -11.75 15.51 5.55 0.09 -11.66 16 18 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 20 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.04 0.31 8.10 -51.93 -0.42 -0.11 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.41 6.46 -51.93 -0.34 0.07 16 32 H 0.09 0.85 7.96 -51.93 -0.41 0.43 16 33 H 0.09 0.77 5.88 -51.93 -0.31 0.46 16 34 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.11 0.85 7.06 -52.49 -0.37 0.48 16 36 H 0.07 0.44 7.85 -51.93 -0.41 0.03 16 37 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 38 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.42 8.01 -51.93 -0.42 0.00 16 41 H 0.06 0.41 8.04 -51.93 -0.42 -0.01 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 0.70 6.22 -51.93 -0.32 0.37 16 44 H 0.40 4.20 8.39 -40.82 -0.34 3.86 16 45 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -34.39 393.92 -9.32 -43.72 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.84 Total: 2.30 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 0.91 Total: -5.80 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.82 Total: -42.40 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.28 Total: -16.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.39 -9.32 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211885986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.332 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds