Wall clock time and date at job start Tue Mar 31 2020 16:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99873 * 2 1 4 4 H 1.09001 * 110.35194 * 30.69211 * 3 2 1 5 5 C 1.53994 * 110.31098 * 268.54849 * 3 2 1 6 6 N 1.47902 * 107.05838 * 242.31090 * 5 3 2 7 7 C 1.46904 * 110.99747 * 214.15587 * 6 5 3 8 8 C 1.50703 * 109.46929 * 69.87519 * 7 6 5 9 9 C 1.31002 * 119.99772 * 125.68244 * 8 7 6 10 10 C 1.50698 * 120.00040 * 5.52011 * 9 8 7 11 11 C 1.50699 * 119.99907 * 185.51804 * 9 8 7 12 12 C 1.48531 * 105.81993 * 334.66988 * 6 5 3 13 13 C 1.54601 * 110.30527 * 152.83553 * 3 2 1 14 14 H 1.08996 * 110.72586 * 22.51298 * 13 3 2 15 15 N 1.46502 * 110.72116 * 259.40883 * 13 3 2 16 16 C 1.34776 * 120.00077 * 155.00209 * 15 13 3 17 17 O 1.21290 * 119.99921 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00313 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.47250 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00006 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00135 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99726 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00197 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99782 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46925 * 60.00372 * 24 22 20 26 26 H 1.48502 * 109.47253 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47279 * 300.00396 * 24 22 20 28 28 H 1.09005 * 109.46734 * 299.99922 * 1 2 3 29 29 H 1.09001 * 109.47610 * 59.99194 * 1 2 3 30 30 H 1.08997 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.91669 * 122.95933 * 5 3 2 32 32 H 1.09002 * 109.91779 * 1.66639 * 5 3 2 33 33 H 1.09002 * 109.46941 * 189.87251 * 7 6 5 34 34 H 1.08998 * 109.46985 * 309.87560 * 7 6 5 35 35 H 1.07992 * 119.99885 * 305.67764 * 8 7 6 36 36 H 1.09001 * 109.47503 * 54.87801 * 10 9 8 37 37 H 1.08999 * 109.47537 * 174.87778 * 10 9 8 38 38 H 1.09003 * 109.47220 * 294.87684 * 10 9 8 39 39 H 1.08997 * 109.46871 * 89.99997 * 11 9 8 40 40 H 1.08999 * 109.47104 * 209.99705 * 11 9 8 41 41 H 1.09000 * 109.47099 * 330.00021 * 11 9 8 42 42 H 1.09002 * 110.66652 * 157.64177 * 12 6 5 43 43 H 1.08999 * 110.66605 * 280.77037 * 12 6 5 44 44 H 0.97001 * 119.99842 * 335.00267 * 15 13 3 45 45 H 1.08995 * 109.46952 * 300.00248 * 18 16 15 46 46 H 1.08997 * 109.47066 * 60.00278 * 18 16 15 47 47 H 0.97009 * 120.00106 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3615 2.0092 0.5216 5 6 2.2610 1.7789 -1.4437 6 7 3.7204 1.9685 -1.5908 7 6 4.0174 3.0884 -2.4939 8 6 3.6359 4.3855 -1.8281 9 6 4.5176 5.3477 -1.7149 10 6 5.8729 5.2074 -2.3586 11 6 4.1764 6.5950 -0.9410 12 6 4.2337 2.2371 -0.2231 13 6 3.4069 1.2710 0.6620 14 1 3.8246 0.2647 0.6290 15 7 3.3384 1.7569 2.0424 16 6 4.2614 1.3630 2.9420 17 8 5.1485 0.6058 2.6089 18 6 4.1907 1.8623 4.3621 19 16 5.5586 1.1604 5.3173 20 6 5.2402 1.8901 6.8891 21 1 4.3949 2.5501 7.0169 22 6 6.0753 1.6160 7.9634 23 7 7.1052 0.8113 7.8078 24 14 5.7374 2.3891 9.6300 25 1 4.3933 1.9732 10.1052 26 1 6.7670 1.9406 10.6017 27 1 5.7835 3.8684 9.5081 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7444 2.7224 -1.6201 32 1 1.9118 1.0239 -2.1481 33 1 5.0830 3.0975 -2.7233 34 1 3.4482 2.9722 -3.4162 35 1 2.6357 4.5216 -1.4444 36 1 5.7505 4.9948 -3.4207 37 1 6.4313 6.1354 -2.2360 38 1 6.4173 4.3905 -1.8849 39 1 4.4570 6.4624 0.1038 40 1 4.7208 7.4420 -1.3586 41 1 3.1049 6.7828 -1.0085 42 1 5.2965 2.0038 -0.1583 43 1 4.0482 3.2730 0.0609 44 1 2.6288 2.3621 2.3088 45 1 4.2638 2.9498 4.3688 46 1 3.2431 1.5590 4.8071 47 1 7.6890 0.6200 8.5585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211885986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:00 Heat of formation + Delta-G solvation = -84.607190 kcal Electronic energy + Delta-G solvation = -25996.144198 eV Core-core repulsion = 22304.659013 eV Total energy + Delta-G solvation = -3691.485185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38885 -40.02695 -38.51716 -36.84617 -35.37867 -34.58046 -32.24965 -30.66802 -29.20683 -28.80816 -28.28269 -27.63769 -27.17694 -24.86211 -22.41449 -22.04536 -21.67635 -19.87929 -18.95649 -18.23050 -18.00378 -17.35589 -16.87528 -16.62682 -16.48577 -16.11999 -15.90545 -15.73964 -15.59241 -15.31842 -15.00692 -14.69108 -14.53956 -14.10274 -14.05435 -13.81505 -13.68789 -13.30403 -13.16916 -13.05669 -13.00424 -12.85931 -12.79116 -12.61338 -12.58369 -12.43111 -12.23424 -11.87905 -11.81611 -11.73761 -11.12519 -11.06338 -10.71258 -10.27492 -10.16786 -9.68063 -9.40273 -8.66638 -8.33921 -6.12412 1.15896 1.25426 1.44280 1.45912 1.55581 1.56950 2.10494 2.27881 2.73457 3.00112 3.09037 3.30300 3.44968 3.57162 3.84802 3.88128 3.97401 4.03888 4.20297 4.22434 4.29506 4.31213 4.37285 4.48935 4.50957 4.56605 4.60097 4.66827 4.68224 4.75954 4.82002 4.87271 4.88193 4.89586 4.91216 5.04067 5.10014 5.16341 5.32028 5.41851 5.63221 5.76178 5.90897 6.07173 6.19951 6.22536 6.42863 7.07029 7.20074 8.75071 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002855 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.770939 B = 9805.883412 C =11248.891958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.080 3.920 4 H 0.098 0.902 5 C 0.021 3.979 6 N -0.515 5.515 7 C 0.073 3.927 8 C -0.212 4.212 9 C -0.120 4.120 10 C -0.124 4.124 11 C -0.121 4.121 12 C 0.037 3.963 13 C 0.143 3.857 14 H 0.076 0.924 15 N -0.704 5.704 16 C 0.537 3.463 17 O -0.561 6.561 18 C -0.128 4.128 19 S -0.150 6.150 20 C -0.548 4.548 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.416 0.584 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.729 10.995 -22.160 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.021 3.979 4 H 0.116 0.884 5 C -0.108 4.108 6 N -0.239 5.239 7 C -0.054 4.054 8 C -0.232 4.232 9 C -0.121 4.121 10 C -0.180 4.180 11 C -0.177 4.177 12 C -0.092 4.092 13 C 0.036 3.964 14 H 0.094 0.906 15 N -0.358 5.358 16 C 0.323 3.677 17 O -0.438 6.438 18 C -0.279 4.279 19 S 0.077 5.923 20 C -0.695 4.695 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.254 0.746 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.778 8.999 -22.896 28.196 hybrid contribution -1.539 2.018 1.877 3.157 sum -15.317 11.017 -21.019 28.245 Atomic orbital electron populations 1.23020 0.79126 1.03918 1.01223 1.88011 1.21768 1.27208 1.94986 1.23200 0.93144 0.85815 0.95703 0.88386 1.23408 0.89214 1.01938 0.96213 1.64985 1.11405 1.39296 1.08169 1.21517 1.02566 0.85574 0.95782 1.23178 0.99660 0.96148 1.04186 1.21887 0.96132 0.96536 0.97567 1.20921 0.94043 1.02439 1.00646 1.20915 1.02228 0.95257 0.99349 1.23399 0.99210 0.98293 0.88273 1.21777 0.95693 0.98605 0.80289 0.90580 1.45634 1.30776 1.50335 1.09057 1.20124 0.81118 0.79712 0.86731 1.90711 1.36179 1.36449 1.80468 1.23354 1.04695 1.05289 0.94544 1.85636 1.35431 1.64319 1.06945 1.23181 1.16802 1.33884 0.95682 0.89804 1.26134 0.93978 0.95369 1.03649 1.70181 1.15804 1.35332 1.33482 0.85006 0.78393 0.78777 0.75824 1.18639 1.20463 1.18553 0.93022 0.92109 0.88991 0.90351 0.89060 0.89874 0.88811 0.86779 0.90479 0.91420 0.92223 0.91724 0.91155 0.91214 0.91761 0.91082 0.74643 0.86935 0.87152 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.87 113.37 1.23 1.54 16 2 O -0.40 -8.83 10.29 -148.98 -1.53 -10.36 16 3 C 0.08 1.49 3.19 31.48 0.10 1.59 16 4 H 0.10 1.28 7.46 -2.39 -0.02 1.26 16 5 C 0.02 0.33 6.27 86.45 0.54 0.87 16 6 N -0.52 -10.31 5.54 -887.56 -4.91 -15.23 16 7 C 0.07 1.14 5.68 85.56 0.49 1.63 16 8 C -0.21 -3.05 6.45 25.65 0.17 -2.89 16 9 C -0.12 -1.78 6.05 -16.49 -0.10 -1.88 16 10 C -0.12 -1.74 8.55 71.24 0.61 -1.13 16 11 C -0.12 -1.56 9.98 71.24 0.71 -0.85 16 12 C 0.04 0.89 6.01 86.65 0.52 1.41 16 13 C 0.14 3.71 3.16 46.20 0.15 3.86 16 14 H 0.08 2.65 7.49 -2.39 -0.02 2.63 16 15 N -0.70 -18.52 5.18 -436.83 -2.26 -20.79 16 16 C 0.54 20.30 7.85 87.66 0.69 20.99 16 17 O -0.56 -26.95 15.51 -3.06 -0.05 -27.00 16 18 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 19 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 20 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.77 5.49 84.86 0.47 1.24 16 23 N -0.91 -56.34 13.22 21.65 0.29 -56.06 16 24 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 28 H 0.05 0.60 8.10 -2.38 -0.02 0.58 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 0.88 6.46 -2.39 -0.02 0.87 16 32 H 0.09 1.48 7.96 -2.39 -0.02 1.46 16 33 H 0.08 1.39 5.88 -2.39 -0.01 1.37 16 34 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 35 H 0.11 1.45 7.06 -2.91 -0.02 1.43 16 36 H 0.08 0.92 7.85 -2.39 -0.02 0.90 16 37 H 0.07 0.86 7.92 -2.39 -0.02 0.84 16 38 H 0.06 0.98 7.67 -2.39 -0.02 0.97 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.79 8.01 -2.39 -0.02 0.78 16 41 H 0.07 0.77 8.04 -2.39 -0.02 0.75 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 1.53 6.22 -2.39 -0.01 1.51 16 44 H 0.42 7.61 8.39 -92.71 -0.78 6.83 16 45 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 46 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 47 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -78.06 393.92 -0.78 -78.84 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.18 Total: 23.54 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 6.65 Total: -8.89 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -6.89 Total: -92.07 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.58 Total: -37.35 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -78.06 -0.78 -78.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211885986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.771 kcal (2) G-P(sol) polarization free energy of solvation -78.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds