Wall clock time and date at job start Tue Mar 31 2020 16:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46937 * 2 1 4 4 C 1.53002 * 109.47228 * 119.99891 * 2 1 3 5 5 N 1.46900 * 109.46826 * 175.60695 * 4 2 1 6 6 C 1.46490 * 110.91059 * 173.43732 * 5 4 2 7 7 C 1.54885 * 107.24267 * 122.60966 * 6 5 4 8 8 H 1.09006 * 112.54279 * 143.12495 * 7 6 5 9 9 O 1.42790 * 107.19126 * 266.49737 * 7 6 5 10 10 C 1.42610 * 115.83221 * 167.07476 * 9 7 6 11 11 C 1.53573 * 108.29948 * 295.40925 * 10 9 7 12 12 N 1.47047 * 107.24403 * 55.91291 * 11 10 9 13 13 C 1.34775 * 120.04601 * 130.32152 * 12 11 10 14 14 O 1.21289 * 119.99826 * 180.02562 * 13 12 11 15 15 C 1.50699 * 120.00167 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.46962 * 180.02562 * 15 13 12 17 17 C 1.76208 * 99.99784 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99870 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99519 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00704 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99439 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47435 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46985 * 120.00149 * 21 19 17 24 24 H 1.48496 * 109.47204 * 239.99912 * 21 19 17 25 25 C 1.45541 * 119.90376 * 310.60056 * 12 11 10 26 26 H 1.08998 * 110.28967 * 165.37708 * 25 12 11 27 27 C 1.48024 * 111.00393 * 294.34648 * 5 4 2 28 28 H 1.09005 * 109.47218 * 299.99862 * 1 2 3 29 29 H 1.08994 * 109.47714 * 60.00323 * 1 2 3 30 30 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46869 * 239.99841 * 2 1 3 32 32 H 1.09005 * 109.46842 * 305.01488 * 3 2 1 33 33 H 1.08997 * 109.46719 * 65.01274 * 3 2 1 34 34 H 1.08994 * 109.47062 * 185.01715 * 3 2 1 35 35 H 1.09003 * 109.47162 * 55.61144 * 4 2 1 36 36 H 1.08999 * 109.47200 * 295.61003 * 4 2 1 37 37 H 1.08995 * 110.06387 * 3.08257 * 6 5 4 38 38 H 1.09003 * 109.66311 * 241.90197 * 6 5 4 39 39 H 1.08994 * 109.70172 * 175.70935 * 10 9 7 40 40 H 1.08999 * 109.70218 * 55.10973 * 10 9 7 41 41 H 1.08998 * 109.90070 * 296.47905 * 11 10 9 42 42 H 1.09008 * 109.96641 * 175.37852 * 11 10 9 43 43 H 1.08997 * 109.47261 * 60.00061 * 15 13 12 44 44 H 1.09002 * 109.47217 * 299.99869 * 15 13 12 45 45 H 0.97003 * 119.99431 * 0.02562 * 20 19 17 46 46 H 1.08995 * 110.42689 * 95.45888 * 27 5 4 47 47 H 1.09000 * 110.42513 * 332.97138 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5052 -0.8137 1.1973 6 6 4.0393 -1.3590 2.4476 7 6 4.8576 -2.6230 2.0847 8 1 5.7496 -2.7347 2.7013 9 8 3.9813 -3.7435 2.2102 10 6 4.4525 -4.9668 1.6489 11 6 4.5762 -4.7839 0.1291 12 7 5.4558 -3.6281 -0.1007 13 6 6.4900 -3.7273 -0.9592 14 8 7.2152 -2.7735 -1.1477 15 6 6.7454 -5.0231 -1.6848 16 16 8.1933 -4.8399 -2.7554 17 6 8.2588 -6.4535 -3.4603 18 1 7.5255 -7.1952 -3.1802 19 6 9.2528 -6.7711 -4.3755 20 7 10.1462 -5.8669 -4.7173 21 14 9.3226 -8.4820 -5.1222 22 1 8.2133 -9.3054 -4.5777 23 1 9.1875 -8.3839 -6.5978 24 1 10.6222 -9.1165 -4.7852 25 6 5.2115 -2.3788 0.6048 26 1 6.0795 -1.7242 0.5261 27 6 3.9429 -1.6782 0.0783 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6051 1.9816 -0.8417 33 1 1.7518 1.9297 0.9315 34 1 3.1262 1.4439 -0.0899 35 1 1.6139 -1.7237 1.2895 36 1 1.7424 -0.1640 2.1375 37 1 3.2226 -1.6256 3.1183 38 1 4.6868 -0.6217 2.9224 39 1 3.7454 -5.7672 1.8661 40 1 5.4274 -5.2128 2.0698 41 1 3.5937 -4.5941 -0.3030 42 1 5.0123 -5.6768 -0.3190 43 1 5.8756 -5.2783 -2.2900 44 1 6.9285 -5.8158 -0.9593 45 1 10.1101 -4.9786 -4.3292 46 1 4.1775 -1.0753 -0.7989 47 1 3.1732 -2.4127 -0.1586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217331668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:56 Heat of formation + Delta-G solvation = -76.638951 kcal Electronic energy + Delta-G solvation = -26795.140692 eV Core-core repulsion = 23104.001036 eV Total energy + Delta-G solvation = -3691.139656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10090 -38.90375 -37.72928 -35.34039 -34.93302 -32.57454 -31.41135 -29.94745 -28.55765 -28.03976 -27.30849 -25.30601 -24.83717 -23.82986 -21.77465 -21.27319 -19.98803 -19.05839 -18.31201 -17.35553 -17.08402 -16.54423 -15.99727 -15.56611 -15.38297 -15.07455 -14.79803 -14.52013 -14.28841 -13.89639 -13.78797 -13.70175 -13.43985 -13.16123 -12.78505 -12.59729 -12.44110 -12.36083 -12.23355 -12.15679 -11.97379 -11.88808 -11.70263 -11.60539 -11.17778 -10.97461 -10.93540 -10.82909 -10.68638 -10.30311 -10.24148 -9.62875 -9.58921 -9.05478 -8.66310 -8.55589 -8.27046 -6.72919 -6.66597 -4.05272 2.58259 2.80198 3.21470 3.33363 3.35369 3.37461 3.50553 3.75726 4.18277 4.22988 4.38458 4.47859 4.57259 4.65642 4.73629 4.83323 4.88145 4.95603 4.97518 5.09641 5.11430 5.18143 5.24878 5.31160 5.31439 5.38087 5.38427 5.44530 5.49726 5.55185 5.61711 5.64527 5.67277 5.73449 5.75827 5.85640 5.88922 5.89195 6.09792 6.18674 6.37759 6.66610 6.78096 6.89310 7.27840 7.87959 8.31822 8.45832 9.22470 10.77438 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.002706 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.253711 B =10346.585558 C =10793.195614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.137 4.137 4 C 0.058 3.942 5 N -0.520 5.520 6 C 0.052 3.948 7 C 0.060 3.940 8 H 0.085 0.915 9 O -0.379 6.379 10 C 0.050 3.950 11 C 0.072 3.928 12 N -0.611 5.611 13 C 0.534 3.466 14 O -0.510 6.510 15 C -0.128 4.128 16 S -0.115 6.115 17 C -0.607 4.607 18 H 0.066 0.934 19 C 0.035 3.965 20 N -0.884 5.884 21 Si 1.090 2.910 22 H -0.288 1.288 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.107 3.893 26 H 0.119 0.881 27 C 0.041 3.959 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.279 0.721 46 H 0.086 0.914 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.248 7.296 15.553 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.194 4.194 4 C -0.070 4.070 5 N -0.244 5.244 6 C -0.077 4.077 7 C 0.001 3.999 8 H 0.103 0.897 9 O -0.298 6.298 10 C -0.028 4.028 11 C -0.052 4.052 12 N -0.347 5.347 13 C 0.322 3.678 14 O -0.383 6.383 15 C -0.279 4.279 16 S 0.111 5.889 17 C -0.755 4.755 18 H 0.085 0.915 19 C -0.175 4.175 20 N -0.518 5.518 21 Si 0.916 3.084 22 H -0.214 1.214 23 H -0.208 1.208 24 H -0.209 1.209 25 C 0.002 3.998 26 H 0.137 0.863 27 C -0.088 4.088 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.304 8.306 14.231 23.894 hybrid contribution -1.938 -1.318 1.242 2.652 sum -19.242 6.988 15.473 25.661 Atomic orbital electron populations 1.21819 0.95190 1.01575 1.01851 1.21129 0.95099 0.97313 0.97873 1.21707 1.02102 0.94764 1.00830 1.22411 0.86937 0.99058 0.98616 1.63448 1.10212 1.48195 1.02538 1.22822 0.99108 0.92840 0.92897 1.23718 0.93781 0.86865 0.95524 0.89733 1.87761 1.44732 1.17867 1.79422 1.22963 1.00838 0.86951 0.92000 1.22533 0.95400 0.89885 0.97363 1.47602 1.30323 1.12117 1.44661 1.20413 0.79081 0.90045 0.78280 1.90709 1.45907 1.39278 1.62428 1.23342 1.05421 0.96892 1.02240 1.84866 1.31848 1.20612 1.51555 1.23741 1.21067 0.97211 1.33518 0.91534 1.26064 0.91575 1.05782 0.94106 1.70742 1.33860 1.05748 1.41477 0.83246 0.76055 0.72791 0.76273 1.21400 1.20849 1.20851 1.22114 0.99871 0.86727 0.91110 0.86280 1.23212 0.95870 0.94700 0.94993 0.92701 0.92471 0.92919 0.91260 0.93474 0.93138 0.91560 0.94422 0.90777 0.90927 0.88833 0.87496 0.92267 0.90597 0.87993 0.88897 0.88961 0.90902 0.89562 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.19 37.16 0.34 -0.70 16 2 C -0.10 -0.81 2.87 -90.62 -0.26 -1.07 16 3 C -0.14 -1.16 9.01 37.16 0.33 -0.82 16 4 C 0.06 0.51 3.89 -3.82 -0.01 0.49 16 5 N -0.52 -5.22 4.69 -232.00 -1.09 -6.31 16 6 C 0.05 0.47 6.51 -3.05 -0.02 0.45 16 7 C 0.06 0.64 3.99 -25.16 -0.10 0.54 16 8 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 9 O -0.38 -4.08 9.98 -35.23 -0.35 -4.43 16 10 C 0.05 0.47 7.02 37.45 0.26 0.73 16 11 C 0.07 0.78 6.27 -3.45 -0.02 0.75 16 12 N -0.61 -8.61 2.76 -164.65 -0.45 -9.06 16 13 C 0.53 9.93 7.69 -10.99 -0.08 9.85 16 14 O -0.51 -11.39 15.27 5.55 0.08 -11.31 16 15 C -0.13 -2.54 4.50 36.01 0.16 -2.38 16 16 S -0.12 -3.07 19.60 -107.50 -2.11 -5.18 16 17 C -0.61 -17.27 9.50 30.94 0.29 -16.97 16 18 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 19 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 20 N -0.88 -27.34 13.67 55.49 0.76 -26.58 16 21 Si 1.09 24.79 29.92 -169.99 -5.09 19.70 16 22 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.11 1.38 3.19 -67.25 -0.21 1.16 16 26 H 0.12 1.77 7.08 -51.93 -0.37 1.40 16 27 C 0.04 0.48 5.11 -2.59 -0.01 0.46 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.67 7.23 -51.93 -0.38 0.30 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 35 H 0.04 0.35 7.95 -51.93 -0.41 -0.06 16 36 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.07 0.63 7.42 -51.93 -0.39 0.25 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.76 7.59 -51.93 -0.39 0.37 16 42 H 0.10 1.07 5.95 -51.92 -0.31 0.76 16 43 H 0.09 1.72 8.00 -51.92 -0.42 1.31 16 44 H 0.09 1.69 7.60 -51.91 -0.39 1.29 16 45 H 0.28 8.80 7.12 -40.82 -0.29 8.51 16 46 H 0.09 1.11 8.13 -51.93 -0.42 0.69 16 47 H 0.05 0.64 6.88 -51.93 -0.36 0.28 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -33.61 379.46 -9.92 -43.52 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.96 Total: 0.50 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 0.57 Total: -6.58 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.78 Total: -41.95 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.27 Total: -15.74 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.09 Total: 19.70 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.11 Total: -5.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.61 -9.92 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217331668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.115 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds