Wall clock time and date at job start Tue Mar 31 2020 16:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46937 * 2 1 4 4 C 1.53002 * 109.47228 * 119.99891 * 2 1 3 5 5 N 1.46900 * 109.46826 * 175.60695 * 4 2 1 6 6 C 1.46490 * 110.91059 * 173.43732 * 5 4 2 7 7 C 1.54885 * 107.24267 * 122.60966 * 6 5 4 8 8 H 1.09006 * 112.54279 * 143.12495 * 7 6 5 9 9 O 1.42790 * 107.19126 * 266.49737 * 7 6 5 10 10 C 1.42610 * 115.83221 * 167.07476 * 9 7 6 11 11 C 1.53573 * 108.29948 * 295.40925 * 10 9 7 12 12 N 1.47047 * 107.24403 * 55.91291 * 11 10 9 13 13 C 1.34775 * 120.04601 * 130.32152 * 12 11 10 14 14 O 1.21289 * 119.99826 * 180.02562 * 13 12 11 15 15 C 1.50699 * 120.00167 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.46962 * 180.02562 * 15 13 12 17 17 C 1.76208 * 99.99784 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99870 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99519 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00704 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99439 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47435 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46985 * 120.00149 * 21 19 17 24 24 H 1.48496 * 109.47204 * 239.99912 * 21 19 17 25 25 C 1.45541 * 119.90376 * 310.60056 * 12 11 10 26 26 H 1.08998 * 110.28967 * 165.37708 * 25 12 11 27 27 C 1.48024 * 111.00393 * 294.34648 * 5 4 2 28 28 H 1.09005 * 109.47218 * 299.99862 * 1 2 3 29 29 H 1.08994 * 109.47714 * 60.00323 * 1 2 3 30 30 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46869 * 239.99841 * 2 1 3 32 32 H 1.09005 * 109.46842 * 305.01488 * 3 2 1 33 33 H 1.08997 * 109.46719 * 65.01274 * 3 2 1 34 34 H 1.08994 * 109.47062 * 185.01715 * 3 2 1 35 35 H 1.09003 * 109.47162 * 55.61144 * 4 2 1 36 36 H 1.08999 * 109.47200 * 295.61003 * 4 2 1 37 37 H 1.08995 * 110.06387 * 3.08257 * 6 5 4 38 38 H 1.09003 * 109.66311 * 241.90197 * 6 5 4 39 39 H 1.08994 * 109.70172 * 175.70935 * 10 9 7 40 40 H 1.08999 * 109.70218 * 55.10973 * 10 9 7 41 41 H 1.08998 * 109.90070 * 296.47905 * 11 10 9 42 42 H 1.09008 * 109.96641 * 175.37852 * 11 10 9 43 43 H 1.08997 * 109.47261 * 60.00061 * 15 13 12 44 44 H 1.09002 * 109.47217 * 299.99869 * 15 13 12 45 45 H 0.97003 * 119.99431 * 0.02562 * 20 19 17 46 46 H 1.08995 * 110.42689 * 95.45888 * 27 5 4 47 47 H 1.09000 * 110.42513 * 332.97138 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5052 -0.8137 1.1973 6 6 4.0393 -1.3590 2.4476 7 6 4.8576 -2.6230 2.0847 8 1 5.7496 -2.7347 2.7013 9 8 3.9813 -3.7435 2.2102 10 6 4.4525 -4.9668 1.6489 11 6 4.5762 -4.7839 0.1291 12 7 5.4558 -3.6281 -0.1007 13 6 6.4900 -3.7273 -0.9592 14 8 7.2152 -2.7735 -1.1477 15 6 6.7454 -5.0231 -1.6848 16 16 8.1933 -4.8399 -2.7554 17 6 8.2588 -6.4535 -3.4603 18 1 7.5255 -7.1952 -3.1802 19 6 9.2528 -6.7711 -4.3755 20 7 10.1462 -5.8669 -4.7173 21 14 9.3226 -8.4820 -5.1222 22 1 8.2133 -9.3054 -4.5777 23 1 9.1875 -8.3839 -6.5978 24 1 10.6222 -9.1165 -4.7852 25 6 5.2115 -2.3788 0.6048 26 1 6.0795 -1.7242 0.5261 27 6 3.9429 -1.6782 0.0783 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6051 1.9816 -0.8417 33 1 1.7518 1.9297 0.9315 34 1 3.1262 1.4439 -0.0899 35 1 1.6139 -1.7237 1.2895 36 1 1.7424 -0.1640 2.1375 37 1 3.2226 -1.6256 3.1183 38 1 4.6868 -0.6217 2.9224 39 1 3.7454 -5.7672 1.8661 40 1 5.4274 -5.2128 2.0698 41 1 3.5937 -4.5941 -0.3030 42 1 5.0123 -5.6768 -0.3190 43 1 5.8756 -5.2783 -2.2900 44 1 6.9285 -5.8158 -0.9593 45 1 10.1101 -4.9786 -4.3292 46 1 4.1775 -1.0753 -0.7989 47 1 3.1732 -2.4127 -0.1586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217331668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:55 Heat of formation + Delta-G solvation = -99.464838 kcal Electronic energy + Delta-G solvation = -26796.130496 eV Core-core repulsion = 23104.001036 eV Total energy + Delta-G solvation = -3692.129461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13603 -40.15736 -38.59357 -36.16743 -36.04631 -34.76758 -32.38371 -31.24606 -29.44577 -29.14397 -27.94422 -27.11551 -26.04843 -24.73734 -22.81720 -22.17119 -20.82927 -20.50206 -19.93417 -18.66021 -18.13455 -17.48336 -16.97555 -16.83924 -16.69760 -16.07549 -15.95957 -15.73560 -15.47240 -15.41129 -14.81699 -14.67241 -14.57168 -14.35995 -14.18539 -13.91173 -13.72205 -13.51318 -13.24802 -13.09529 -12.96714 -12.78821 -12.75556 -12.58258 -12.48261 -11.93318 -11.85626 -11.69667 -11.67272 -11.57322 -11.44559 -11.26376 -11.13366 -11.03753 -10.34129 -9.76368 -9.39122 -8.94252 -8.90684 -6.30253 1.06533 1.32914 1.50251 1.61363 1.74134 1.79143 2.31154 2.53674 2.92956 3.01053 3.02467 3.29624 3.43349 3.52044 3.73725 3.84604 3.91714 3.98773 4.03395 4.07110 4.11402 4.17615 4.27191 4.27575 4.33312 4.46902 4.61212 4.64496 4.67095 4.69266 4.76261 4.80611 4.83130 4.84730 4.93705 5.05629 5.11801 5.26965 5.27479 5.43633 5.48778 5.63127 5.83549 5.99567 6.01312 6.07889 6.13222 6.89730 7.04500 8.49263 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.002706 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.253711 B =10346.585558 C =10793.195614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.133 4.133 4 C 0.061 3.939 5 N -0.525 5.525 6 C 0.055 3.945 7 C 0.067 3.933 8 H 0.090 0.910 9 O -0.381 6.381 10 C 0.052 3.948 11 C 0.064 3.936 12 N -0.597 5.597 13 C 0.533 3.467 14 O -0.558 6.558 15 C -0.103 4.103 16 S -0.196 6.196 17 C -0.610 4.610 18 H 0.077 0.923 19 C -0.020 4.020 20 N -0.914 5.914 21 Si 1.142 2.858 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.275 1.275 25 C 0.101 3.899 26 H 0.093 0.907 27 C 0.053 3.947 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.036 0.964 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.139 0.861 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.261 0.739 46 H 0.065 0.935 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.928 5.670 17.246 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.190 4.190 4 C -0.067 4.067 5 N -0.249 5.249 6 C -0.073 4.073 7 C 0.008 3.992 8 H 0.108 0.892 9 O -0.300 6.300 10 C -0.025 4.025 11 C -0.058 4.058 12 N -0.331 5.331 13 C 0.321 3.679 14 O -0.436 6.436 15 C -0.254 4.254 16 S 0.031 5.969 17 C -0.758 4.758 18 H 0.095 0.905 19 C -0.223 4.223 20 N -0.550 5.550 21 Si 0.960 3.040 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.005 4.005 26 H 0.111 0.889 27 C -0.076 4.076 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.157 0.843 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.046 6.682 15.976 26.489 hybrid contribution -1.220 -0.746 0.815 1.646 sum -21.266 5.936 16.791 27.738 Atomic orbital electron populations 1.21778 0.93844 1.01915 1.02455 1.21119 0.96187 0.96954 0.97131 1.21661 1.00868 0.95042 1.01458 1.22439 0.85844 0.99173 0.99202 1.63449 1.11313 1.47758 1.02395 1.22887 0.99467 0.92389 0.92521 1.23706 0.94336 0.87772 0.93399 0.89248 1.87771 1.44764 1.18134 1.79342 1.23117 1.01855 0.87212 0.90333 1.22876 0.95229 0.88633 0.99081 1.47567 1.29059 1.13657 1.42866 1.20213 0.79880 0.88922 0.78854 1.90694 1.48081 1.40490 1.64345 1.23215 1.02287 0.98410 1.01500 1.85132 1.36606 1.21197 1.53957 1.24053 1.21043 0.97490 1.33179 0.90521 1.27842 0.90893 1.09110 0.94425 1.70865 1.35583 1.05633 1.42874 0.82648 0.77280 0.68223 0.75875 1.18511 1.20110 1.20037 1.22206 0.99409 0.85876 0.92966 0.88913 1.22988 0.95168 0.94415 0.95016 0.91669 0.92321 0.92704 0.92979 0.93182 0.92202 0.93378 0.94546 0.89360 0.89657 0.87694 0.84300 0.92429 0.89177 0.87273 0.87087 0.86824 0.92818 0.91612 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.19 71.98 0.66 -1.09 16 2 C -0.10 -1.50 2.87 -10.79 -0.03 -1.53 16 3 C -0.13 -2.15 9.01 71.98 0.65 -1.50 16 4 C 0.06 0.95 3.89 86.30 0.34 1.29 16 5 N -0.53 -9.91 4.69 -887.92 -4.16 -14.07 16 6 C 0.06 0.90 6.51 87.03 0.57 1.46 16 7 C 0.07 1.31 3.99 31.61 0.13 1.44 16 8 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 9 O -0.38 -7.06 9.98 -148.98 -1.49 -8.55 16 10 C 0.05 0.80 7.02 72.17 0.51 1.31 16 11 C 0.06 1.22 6.27 86.47 0.54 1.76 16 12 N -0.60 -16.37 2.76 -793.23 -2.19 -18.56 16 13 C 0.53 20.02 7.69 87.66 0.67 20.70 16 14 O -0.56 -26.08 15.27 -3.06 -0.05 -26.12 16 15 C -0.10 -4.03 4.50 71.24 0.32 -3.71 16 16 S -0.20 -10.72 19.60 -56.49 -1.11 -11.83 16 17 C -0.61 -34.71 9.50 67.95 0.65 -34.07 16 18 H 0.08 4.07 7.80 -2.91 -0.02 4.05 16 19 C -0.02 -1.13 5.49 84.86 0.47 -0.66 16 20 N -0.91 -57.91 13.67 21.65 0.30 -57.62 16 21 Si 1.14 48.89 29.92 68.60 2.05 50.95 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 C 0.10 2.56 3.19 45.95 0.15 2.71 16 26 H 0.09 2.89 7.08 -2.39 -0.02 2.87 16 27 C 0.05 1.22 5.11 86.49 0.44 1.66 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 1.00 7.23 -2.39 -0.02 0.98 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.95 7.88 -2.39 -0.02 0.93 16 35 H 0.04 0.59 7.95 -2.39 -0.02 0.57 16 36 H 0.09 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.09 1.21 7.42 -2.39 -0.02 1.20 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.14 1.33 8.14 -2.39 -0.02 1.32 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.54 7.59 -2.39 -0.02 1.52 16 42 H 0.11 1.95 5.95 -2.38 -0.01 1.94 16 43 H 0.11 3.95 8.00 -2.40 -0.02 3.93 16 44 H 0.11 3.97 7.60 -2.39 -0.02 3.95 16 45 H 0.26 17.21 7.12 -92.71 -0.66 16.55 16 46 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 47 H 0.06 1.25 6.88 -2.39 -0.02 1.24 16 Total: -1.00 -75.55 379.46 0.46 -75.09 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 1.05 Total: 20.95 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 6.05 Total: -10.24 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -6.05 Total: -90.25 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.53 Total: -34.67 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.05 Total: 50.95 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.11 Total: -11.83 kcal Total: -75.55 0.46 -75.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217331668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.374 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds