Wall clock time and date at job start Tue Mar 31 2020 16:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46955 * 2 1 4 4 C 1.53002 * 109.46955 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47089 * 180.02562 * 4 3 2 6 6 C 1.46489 * 110.91387 * 69.09544 * 5 4 3 7 7 C 1.54884 * 107.24512 * 122.60299 * 6 5 4 8 8 H 1.09004 * 112.53984 * 143.11962 * 7 6 5 9 9 O 1.42787 * 107.19373 * 266.49892 * 7 6 5 10 10 C 1.42616 * 115.82891 * 167.07281 * 9 7 6 11 11 C 1.53566 * 108.30210 * 295.40943 * 10 9 7 12 12 N 1.47048 * 107.24248 * 55.91438 * 11 10 9 13 13 C 1.34773 * 120.04408 * 130.32372 * 12 11 10 14 14 O 1.21287 * 120.00030 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00266 * 359.97438 * 13 12 11 16 16 S 1.80996 * 109.47087 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99917 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00415 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99716 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00435 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99769 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 60.00524 * 21 19 17 23 23 H 1.48503 * 109.47399 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47295 * 300.00621 * 21 19 17 25 25 C 1.45534 * 119.90534 * 310.60046 * 12 11 10 26 26 H 1.09000 * 110.29291 * 165.38017 * 25 12 11 27 27 C 1.48026 * 110.99815 * 190.00203 * 5 4 3 28 28 H 1.09003 * 109.46871 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47072 * 299.99445 * 1 2 3 30 30 H 1.09000 * 109.47118 * 59.99805 * 1 2 3 31 31 H 1.09004 * 109.46887 * 240.00202 * 2 1 3 32 32 H 1.09000 * 109.47118 * 120.00195 * 2 1 3 33 33 H 1.09004 * 109.47158 * 60.00368 * 3 2 1 34 34 H 1.09000 * 109.47367 * 300.00042 * 3 2 1 35 35 H 1.08997 * 109.47072 * 60.00555 * 4 3 2 36 36 H 1.09000 * 109.47118 * 300.00195 * 4 3 2 37 37 H 1.08997 * 110.05853 * 3.07913 * 6 5 4 38 38 H 1.09003 * 109.66170 * 241.90406 * 6 5 4 39 39 H 1.09000 * 109.69370 * 175.70654 * 10 9 7 40 40 H 1.09002 * 109.69912 * 55.11556 * 10 9 7 41 41 H 1.09001 * 109.90272 * 296.48202 * 11 10 9 42 42 H 1.08999 * 109.96408 * 175.38089 * 11 10 9 43 43 H 1.09001 * 109.46841 * 60.00041 * 15 13 12 44 44 H 1.08996 * 109.46854 * 300.00149 * 15 13 12 45 45 H 0.97000 * 119.99818 * 0.02562 * 20 19 17 46 46 H 1.09004 * 110.43042 * 95.46290 * 27 5 4 47 47 H 1.08998 * 110.43271 * 332.96978 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7742 3.4825 1.2788 7 6 5.1261 3.9678 1.8581 8 1 5.0411 4.9256 2.3714 9 8 5.6065 2.9406 2.7258 10 6 6.9667 3.0609 3.1376 11 6 7.8603 2.9211 1.8965 12 7 7.4236 3.9378 0.9281 13 6 8.3290 4.7508 0.3488 14 8 7.9679 5.5895 -0.4495 15 6 9.7901 4.6187 0.6938 16 16 10.7434 5.8414 -0.2401 17 6 12.3659 5.4718 0.3393 18 1 12.5148 4.6821 1.0607 19 6 13.4527 6.1949 -0.1325 20 7 13.2713 7.1571 -1.0122 21 14 15.1727 5.8036 0.4823 22 1 15.5080 4.3952 0.1515 23 1 16.1501 6.7118 -0.1697 24 1 15.2273 5.9928 1.9542 25 6 6.0116 4.0689 0.6008 26 1 5.8293 5.0111 0.0839 27 6 5.5195 2.8741 -0.2406 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9289 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 3.3088 2.7753 1.9653 38 1 3.1135 4.3340 1.1153 39 1 7.2050 2.2734 3.8526 40 1 7.1265 4.0361 3.5975 41 1 7.7456 1.9259 1.4668 42 1 8.9025 3.0902 2.1674 43 1 10.1345 3.6166 0.4383 44 1 9.9281 4.7892 1.7614 45 1 12.3781 7.3611 -1.3306 46 1 5.7257 3.0426 -1.2977 47 1 5.9905 1.9511 0.0974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217331959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:59 Heat of formation + Delta-G solvation = -79.364561 kcal Electronic energy + Delta-G solvation = -26335.233693 eV Core-core repulsion = 22643.975845 eV Total energy + Delta-G solvation = -3691.257847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.08708 -38.86716 -37.56277 -35.33392 -34.91027 -32.57374 -31.98010 -29.97111 -29.15343 -28.54915 -27.01798 -24.88094 -23.85916 -23.63648 -21.70757 -21.36584 -20.69762 -19.03076 -18.31543 -17.43344 -17.09234 -16.54971 -15.92170 -15.76287 -15.46651 -15.09533 -14.95451 -14.46164 -14.33513 -14.17860 -13.87191 -13.60096 -13.51038 -13.20591 -12.98182 -12.69888 -12.47581 -12.41373 -12.20980 -12.08568 -11.92324 -11.84969 -11.65039 -11.45364 -11.33807 -11.13374 -10.95412 -10.86565 -10.73868 -10.30929 -10.20651 -9.62088 -9.59210 -9.05828 -8.67164 -8.58097 -8.27564 -6.73073 -6.66348 -4.05142 2.57599 2.79801 3.21080 3.33535 3.34677 3.35410 3.54553 3.73734 4.18540 4.21906 4.35612 4.49908 4.56960 4.64775 4.69538 4.80330 4.82060 4.89701 4.97727 5.00436 5.09681 5.13381 5.18213 5.24545 5.30971 5.31158 5.34659 5.38738 5.48084 5.50835 5.54785 5.62494 5.62905 5.65039 5.74964 5.76689 5.82429 5.88959 5.94687 6.02706 6.36869 6.65265 6.77116 6.89013 7.27380 7.86485 8.31414 8.45550 9.22446 10.77411 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029320 B = 0.002307 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.749323 B =12134.991661 C =12395.348818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.115 4.115 4 C 0.051 3.949 5 N -0.523 5.523 6 C 0.051 3.949 7 C 0.060 3.940 8 H 0.085 0.915 9 O -0.379 6.379 10 C 0.050 3.950 11 C 0.071 3.929 12 N -0.611 5.611 13 C 0.534 3.466 14 O -0.510 6.510 15 C -0.128 4.128 16 S -0.114 6.114 17 C -0.609 4.609 18 H 0.066 0.934 19 C 0.036 3.964 20 N -0.882 5.882 21 Si 1.084 2.916 22 H -0.285 1.285 23 H -0.277 1.277 24 H -0.285 1.285 25 C 0.108 3.892 26 H 0.120 0.880 27 C 0.040 3.960 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.278 0.722 46 H 0.087 0.913 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.818 -14.356 7.897 27.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.077 4.077 5 N -0.247 5.247 6 C -0.078 4.078 7 C 0.001 3.999 8 H 0.103 0.897 9 O -0.298 6.298 10 C -0.028 4.028 11 C -0.052 4.052 12 N -0.347 5.347 13 C 0.322 3.678 14 O -0.383 6.383 15 C -0.279 4.279 16 S 0.112 5.888 17 C -0.757 4.757 18 H 0.084 0.916 19 C -0.175 4.175 20 N -0.516 5.516 21 Si 0.910 3.090 22 H -0.211 1.211 23 H -0.202 1.202 24 H -0.211 1.211 25 C 0.002 3.998 26 H 0.138 0.862 27 C -0.089 4.089 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.140 -12.543 6.197 25.350 hybrid contribution -0.394 -1.884 1.826 2.653 sum -21.534 -14.427 8.023 27.133 Atomic orbital electron populations 1.21756 0.95743 1.01511 1.01873 1.21495 0.95975 0.96793 1.01975 1.21611 0.94352 0.96579 1.02751 1.22334 0.95669 0.88699 1.01043 1.63455 1.13683 1.16657 1.30882 1.22875 0.94859 1.00225 0.89796 1.23731 0.94214 0.91960 0.90044 0.89719 1.87764 1.27103 1.48726 1.66174 1.22969 0.81614 1.02761 0.95434 1.22534 1.00441 0.92386 0.89827 1.47605 1.05967 1.36349 1.44812 1.20415 0.87494 0.79898 0.80000 1.90708 1.80464 1.34173 1.32971 1.23345 0.93615 1.05888 1.05073 1.84860 1.02804 1.43797 1.57311 1.23684 0.92188 1.26218 1.33566 0.91613 1.26063 1.04066 0.92977 0.94390 1.70804 1.26213 1.27595 1.27007 0.83332 0.73679 0.76158 0.75857 1.21114 1.20229 1.21127 1.22101 0.80788 1.01195 0.95683 0.86229 1.23198 0.86910 0.97692 1.01080 0.92857 0.92789 0.92662 0.91987 0.92181 0.92000 0.91088 0.90902 0.94239 0.90741 0.88932 0.87477 0.92255 0.90576 0.87974 0.88889 0.88952 0.90983 0.89425 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.85 5.23 -26.73 -0.14 -0.99 16 4 C 0.05 0.45 4.53 -3.82 -0.02 0.43 16 5 N -0.52 -5.41 5.15 -231.99 -1.19 -6.60 16 6 C 0.05 0.48 5.83 -3.05 -0.02 0.46 16 7 C 0.06 0.64 3.99 -25.16 -0.10 0.54 16 8 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 9 O -0.38 -4.11 9.99 -35.23 -0.35 -4.46 16 10 C 0.05 0.47 7.02 37.45 0.26 0.73 16 11 C 0.07 0.77 6.26 -3.45 -0.02 0.75 16 12 N -0.61 -8.65 2.76 -164.65 -0.45 -9.11 16 13 C 0.53 9.96 7.69 -10.99 -0.08 9.87 16 14 O -0.51 -11.42 15.27 5.55 0.08 -11.34 16 15 C -0.13 -2.55 4.50 36.01 0.16 -2.39 16 16 S -0.11 -3.04 19.60 -107.50 -2.11 -5.15 16 17 C -0.61 -17.32 9.50 30.94 0.29 -17.02 16 18 H 0.07 1.78 7.80 -52.49 -0.41 1.37 16 19 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 20 N -0.88 -27.28 13.67 55.49 0.76 -26.52 16 21 Si 1.08 24.65 29.92 -169.99 -5.09 19.56 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.11 1.40 3.19 -67.24 -0.21 1.18 16 26 H 0.12 1.79 7.08 -51.93 -0.37 1.42 16 27 C 0.04 0.47 6.26 -2.58 -0.02 0.46 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.46 7.07 -51.93 -0.37 0.09 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.04 0.36 7.98 -51.93 -0.41 -0.05 16 37 H 0.07 0.67 6.68 -51.93 -0.35 0.32 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.76 7.59 -51.93 -0.39 0.37 16 42 H 0.10 1.07 5.95 -51.93 -0.31 0.76 16 43 H 0.09 1.72 7.99 -51.92 -0.41 1.31 16 44 H 0.09 1.69 7.60 -51.92 -0.39 1.29 16 45 H 0.28 8.78 7.13 -40.82 -0.29 8.49 16 46 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.05 0.64 7.00 -51.93 -0.36 0.27 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -33.80 380.52 -10.33 -44.13 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.94 Total: 0.25 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 0.22 Total: -6.51 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.89 Total: -42.23 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.27 Total: -15.80 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.56 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.11 Total: -5.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.80 -10.33 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217331959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.233 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds