Wall clock time and date at job start Tue Mar 31 2020 16:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46955 * 2 1 4 4 C 1.53002 * 109.46955 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47089 * 180.02562 * 4 3 2 6 6 C 1.46489 * 110.91387 * 69.09544 * 5 4 3 7 7 C 1.54884 * 107.24512 * 122.60299 * 6 5 4 8 8 H 1.09004 * 112.53984 * 143.11962 * 7 6 5 9 9 O 1.42787 * 107.19373 * 266.49892 * 7 6 5 10 10 C 1.42616 * 115.82891 * 167.07281 * 9 7 6 11 11 C 1.53566 * 108.30210 * 295.40943 * 10 9 7 12 12 N 1.47048 * 107.24248 * 55.91438 * 11 10 9 13 13 C 1.34773 * 120.04408 * 130.32372 * 12 11 10 14 14 O 1.21287 * 120.00030 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00266 * 359.97438 * 13 12 11 16 16 S 1.80996 * 109.47087 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99917 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00415 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99716 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00435 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99769 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 60.00524 * 21 19 17 23 23 H 1.48503 * 109.47399 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47295 * 300.00621 * 21 19 17 25 25 C 1.45534 * 119.90534 * 310.60046 * 12 11 10 26 26 H 1.09000 * 110.29291 * 165.38017 * 25 12 11 27 27 C 1.48026 * 110.99815 * 190.00203 * 5 4 3 28 28 H 1.09003 * 109.46871 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47072 * 299.99445 * 1 2 3 30 30 H 1.09000 * 109.47118 * 59.99805 * 1 2 3 31 31 H 1.09004 * 109.46887 * 240.00202 * 2 1 3 32 32 H 1.09000 * 109.47118 * 120.00195 * 2 1 3 33 33 H 1.09004 * 109.47158 * 60.00368 * 3 2 1 34 34 H 1.09000 * 109.47367 * 300.00042 * 3 2 1 35 35 H 1.08997 * 109.47072 * 60.00555 * 4 3 2 36 36 H 1.09000 * 109.47118 * 300.00195 * 4 3 2 37 37 H 1.08997 * 110.05853 * 3.07913 * 6 5 4 38 38 H 1.09003 * 109.66170 * 241.90406 * 6 5 4 39 39 H 1.09000 * 109.69370 * 175.70654 * 10 9 7 40 40 H 1.09002 * 109.69912 * 55.11556 * 10 9 7 41 41 H 1.09001 * 109.90272 * 296.48202 * 11 10 9 42 42 H 1.08999 * 109.96408 * 175.38089 * 11 10 9 43 43 H 1.09001 * 109.46841 * 60.00041 * 15 13 12 44 44 H 1.08996 * 109.46854 * 300.00149 * 15 13 12 45 45 H 0.97000 * 119.99818 * 0.02562 * 20 19 17 46 46 H 1.09004 * 110.43042 * 95.46290 * 27 5 4 47 47 H 1.08998 * 110.43271 * 332.96978 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7742 3.4825 1.2788 7 6 5.1261 3.9678 1.8581 8 1 5.0411 4.9256 2.3714 9 8 5.6065 2.9406 2.7258 10 6 6.9667 3.0609 3.1376 11 6 7.8603 2.9211 1.8965 12 7 7.4236 3.9378 0.9281 13 6 8.3290 4.7508 0.3488 14 8 7.9679 5.5895 -0.4495 15 6 9.7901 4.6187 0.6938 16 16 10.7434 5.8414 -0.2401 17 6 12.3659 5.4718 0.3393 18 1 12.5148 4.6821 1.0607 19 6 13.4527 6.1949 -0.1325 20 7 13.2713 7.1571 -1.0122 21 14 15.1727 5.8036 0.4823 22 1 15.5080 4.3952 0.1515 23 1 16.1501 6.7118 -0.1697 24 1 15.2273 5.9928 1.9542 25 6 6.0116 4.0689 0.6008 26 1 5.8293 5.0111 0.0839 27 6 5.5195 2.8741 -0.2406 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9289 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 3.3088 2.7753 1.9653 38 1 3.1135 4.3340 1.1153 39 1 7.2050 2.2734 3.8526 40 1 7.1265 4.0361 3.5975 41 1 7.7456 1.9259 1.4668 42 1 8.9025 3.0902 2.1674 43 1 10.1345 3.6166 0.4383 44 1 9.9281 4.7892 1.7614 45 1 12.3781 7.3611 -1.3306 46 1 5.7257 3.0426 -1.2977 47 1 5.9905 1.9511 0.0974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217331959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:58 Heat of formation + Delta-G solvation = -102.443787 kcal Electronic energy + Delta-G solvation = -26336.234483 eV Core-core repulsion = 22643.975845 eV Total energy + Delta-G solvation = -3692.258638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13001 -40.13527 -38.41759 -36.19353 -35.88073 -34.76353 -32.83142 -31.32602 -29.97853 -29.49243 -27.99231 -27.05001 -24.74601 -24.37717 -22.61679 -22.24395 -21.45543 -20.57166 -19.91583 -18.69605 -18.15108 -17.53019 -16.95003 -16.87442 -16.53379 -16.37460 -15.96645 -15.76124 -15.50743 -15.34114 -15.03920 -14.77769 -14.53503 -14.32409 -14.16773 -13.93109 -13.83127 -13.66716 -13.27504 -13.11137 -12.95532 -12.82109 -12.74016 -12.49189 -12.08475 -11.96298 -11.90744 -11.82127 -11.65139 -11.56100 -11.40930 -11.29172 -11.10789 -11.03256 -10.34309 -9.76802 -9.43675 -8.93638 -8.90485 -6.29838 1.06528 1.32750 1.50573 1.60178 1.74788 1.80910 2.32194 2.52979 2.89931 3.01238 3.02819 3.28056 3.41835 3.50549 3.75879 3.84878 3.94241 4.00839 4.02530 4.10460 4.14601 4.17546 4.26084 4.27530 4.33117 4.42128 4.48929 4.60287 4.65357 4.66637 4.72557 4.77583 4.80828 4.89264 4.95508 5.01791 5.10219 5.25718 5.29483 5.40033 5.48851 5.62649 5.81315 5.99201 5.99471 6.06806 6.13163 6.89480 7.04836 8.49559 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029320 B = 0.002307 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.749323 B =12134.991661 C =12395.348818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.108 4.108 4 C 0.053 3.947 5 N -0.530 5.530 6 C 0.055 3.945 7 C 0.067 3.933 8 H 0.090 0.910 9 O -0.381 6.381 10 C 0.051 3.949 11 C 0.063 3.937 12 N -0.598 5.598 13 C 0.534 3.466 14 O -0.559 6.559 15 C -0.103 4.103 16 S -0.195 6.195 17 C -0.613 4.613 18 H 0.077 0.923 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.136 2.864 22 H -0.263 1.263 23 H -0.281 1.281 24 H -0.262 1.262 25 C 0.102 3.898 26 H 0.094 0.906 27 C 0.049 3.951 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.140 0.860 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.260 0.740 46 H 0.070 0.930 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.313 -16.847 10.307 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.075 4.075 5 N -0.254 5.254 6 C -0.073 4.073 7 C 0.007 3.993 8 H 0.108 0.892 9 O -0.300 6.300 10 C -0.026 4.026 11 C -0.058 4.058 12 N -0.332 5.332 13 C 0.322 3.678 14 O -0.436 6.436 15 C -0.254 4.254 16 S 0.032 5.968 17 C -0.760 4.760 18 H 0.096 0.904 19 C -0.222 4.222 20 N -0.548 5.548 21 Si 0.954 3.046 22 H -0.187 1.187 23 H -0.207 1.207 24 H -0.187 1.187 25 C -0.004 4.004 26 H 0.112 0.888 27 C -0.080 4.080 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.157 0.843 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.690 -15.087 8.647 27.801 hybrid contribution -0.378 -1.194 1.113 1.676 sum -22.069 -16.281 9.760 29.110 Atomic orbital electron populations 1.21753 0.95227 1.01950 1.01923 1.21474 0.96396 0.96002 1.02119 1.21549 0.93217 0.97288 1.02543 1.22362 0.96526 0.87666 1.00932 1.63461 1.12417 1.17851 1.31690 1.22920 0.94258 1.00742 0.89355 1.23714 0.94064 0.92501 0.88999 0.89230 1.87773 1.27831 1.48564 1.65846 1.23129 0.80483 1.04003 0.94955 1.22883 1.01326 0.91881 0.89744 1.47570 1.05884 1.35603 1.44126 1.20216 0.87546 0.80161 0.79908 1.90695 1.80998 1.36553 1.35376 1.23218 0.93387 1.04026 1.04805 1.85128 1.04368 1.47535 1.59776 1.24017 0.92614 1.26117 1.33269 0.90447 1.27845 1.08651 0.92087 0.93655 1.70924 1.25136 1.29615 1.29102 0.82723 0.68435 0.76952 0.76519 1.18733 1.20661 1.18666 1.22183 0.80296 1.00577 0.97310 0.88833 1.23020 0.88106 0.97097 0.99792 0.92254 0.92573 0.92803 0.92017 0.91872 0.91658 0.91803 0.91158 0.94149 0.89681 0.87910 0.84255 0.92426 0.89064 0.87217 0.87032 0.86815 0.92914 0.91203 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.35 5.93 30.59 0.18 -1.16 16 3 C -0.11 -1.42 5.23 30.59 0.16 -1.26 16 4 C 0.05 0.84 4.53 86.30 0.39 1.24 16 5 N -0.53 -10.34 5.15 -887.88 -4.57 -14.91 16 6 C 0.06 0.93 5.83 87.02 0.51 1.44 16 7 C 0.07 1.32 3.99 31.61 0.13 1.44 16 8 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 9 O -0.38 -7.12 9.99 -148.98 -1.49 -8.61 16 10 C 0.05 0.79 7.02 72.17 0.51 1.30 16 11 C 0.06 1.20 6.26 86.47 0.54 1.74 16 12 N -0.60 -16.33 2.76 -793.23 -2.19 -18.52 16 13 C 0.53 19.97 7.69 87.66 0.67 20.65 16 14 O -0.56 -26.04 15.27 -3.05 -0.05 -26.09 16 15 C -0.10 -4.03 4.50 71.24 0.32 -3.71 16 16 S -0.19 -10.66 19.60 -56.49 -1.11 -11.77 16 17 C -0.61 -34.81 9.50 67.96 0.65 -34.17 16 18 H 0.08 4.08 7.80 -2.91 -0.02 4.05 16 19 C -0.02 -1.11 5.49 84.86 0.47 -0.64 16 20 N -0.91 -57.79 13.67 21.65 0.30 -57.49 16 21 Si 1.14 48.58 29.92 68.60 2.05 50.63 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 25 C 0.10 2.59 3.19 45.96 0.15 2.74 16 26 H 0.09 2.92 7.08 -2.39 -0.02 2.90 16 27 C 0.05 1.13 6.26 86.49 0.54 1.67 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.82 7.07 -2.38 -0.02 0.81 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 36 H 0.04 0.65 7.98 -2.39 -0.02 0.63 16 37 H 0.08 1.29 6.68 -2.39 -0.02 1.28 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.53 7.59 -2.39 -0.02 1.51 16 42 H 0.11 1.93 5.95 -2.39 -0.01 1.92 16 43 H 0.11 3.94 7.99 -2.39 -0.02 3.92 16 44 H 0.11 3.95 7.60 -2.40 -0.02 3.93 16 45 H 0.26 17.16 7.13 -92.71 -0.66 16.49 16 46 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 47 H 0.06 1.28 7.00 -2.39 -0.02 1.27 16 Total: -1.00 -75.65 380.52 -0.08 -75.73 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 1.05 Total: 20.54 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.92 Total: -9.51 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -6.46 Total: -90.92 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.53 Total: -34.70 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.05 Total: 50.63 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -1.11 Total: -11.77 kcal Total: -75.65 -0.08 -75.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217331959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.718 kcal (2) G-P(sol) polarization free energy of solvation -75.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds