Wall clock time and date at job start Tue Mar 31 2020 15:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47240 * 2 1 4 4 C 1.30998 * 120.00194 * 125.00045 * 3 2 1 5 5 C 1.50701 * 119.99872 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47212 * 124.99896 * 5 4 3 7 7 N 1.46894 * 109.47515 * 179.97438 * 6 5 4 8 8 C 1.48558 * 111.00572 * 169.99829 * 7 6 5 9 9 C 1.54381 * 104.59714 * 159.04108 * 8 7 6 10 10 H 1.08997 * 110.31954 * 95.15012 * 9 8 7 11 11 N 1.46499 * 110.32193 * 217.25421 * 9 8 7 12 12 C 1.34785 * 120.00067 * 273.54543 * 11 9 8 13 13 O 1.21278 * 119.99715 * 0.02562 * 12 11 9 14 14 C 1.50696 * 119.99861 * 180.02562 * 12 11 9 15 15 S 1.81005 * 109.46911 * 180.02562 * 14 12 11 16 16 C 1.76200 * 99.99973 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99660 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99731 * 180.02562 * 16 15 14 19 19 N 1.31637 * 119.99785 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00348 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47454 * 90.00258 * 20 18 16 22 22 H 1.48504 * 109.47301 * 210.00306 * 20 18 16 23 23 H 1.48504 * 109.47016 * 330.00235 * 20 18 16 24 24 C 1.54252 * 105.06062 * 336.14937 * 9 8 7 25 25 H 1.08999 * 110.32575 * 118.89765 * 24 9 8 26 26 O 1.42901 * 110.32590 * 241.00163 * 24 9 8 27 27 C 1.48557 * 111.00159 * 285.41911 * 7 6 5 28 28 H 1.09004 * 109.47344 * 300.00514 * 1 2 3 29 29 H 1.09003 * 109.46902 * 59.99909 * 1 2 3 30 30 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46877 * 239.99443 * 2 1 3 32 32 H 1.09004 * 109.46932 * 119.99537 * 2 1 3 33 33 H 1.08005 * 119.99624 * 304.99604 * 3 2 1 34 34 H 1.07995 * 120.00180 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.47060 * 244.99951 * 5 4 3 36 36 H 1.09001 * 109.47380 * 5.00038 * 5 4 3 37 37 H 1.09002 * 109.47153 * 299.99998 * 6 5 4 38 38 H 1.08998 * 109.47533 * 59.99628 * 6 5 4 39 39 H 1.09005 * 110.41285 * 277.82645 * 8 7 6 40 40 H 1.09009 * 110.40984 * 40.26353 * 8 7 6 41 41 H 0.96995 * 120.00103 * 93.54726 * 11 9 8 42 42 H 1.09002 * 109.47406 * 299.99833 * 14 12 11 43 43 H 1.09004 * 109.47008 * 60.00150 * 14 12 11 44 44 H 0.96998 * 119.99820 * 179.97438 * 19 18 16 45 45 H 0.96703 * 114.00467 * 179.97438 * 26 24 9 46 46 H 1.08996 * 110.41165 * 319.73567 * 27 7 6 47 47 H 1.09013 * 110.40992 * 82.17947 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8642 1.8214 0.9293 5 6 3.3670 3.2421 0.9289 6 6 3.0719 3.8879 2.2841 7 7 3.5625 5.2725 2.2840 8 6 3.0863 6.0063 3.4847 9 6 4.0685 7.1880 3.6335 10 1 3.6630 8.0797 3.1556 11 7 4.3396 7.4491 5.0493 12 6 3.5226 8.2569 5.7541 13 8 2.5628 8.7671 5.2163 14 6 3.8018 8.5259 7.2103 15 16 2.5361 9.6380 7.8719 16 6 3.0926 9.7783 9.5378 17 1 3.9791 9.2505 9.8572 18 6 2.3910 10.5661 10.4397 19 7 2.8064 10.6705 11.6845 20 14 0.8574 11.4783 9.8874 21 1 -0.3335 10.6159 10.0954 22 1 0.7103 12.7251 10.6806 23 1 0.9761 11.8192 8.4469 24 6 5.3559 6.7317 2.9168 25 1 5.5833 7.3991 2.0855 26 8 6.4494 6.6951 3.8360 27 6 5.0433 5.3127 2.3952 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7066 2.1087 -0.7663 34 1 3.1897 1.1337 1.6957 35 1 4.4423 3.2469 0.7506 36 1 2.8656 3.8048 0.1414 37 1 1.9965 3.8831 2.4624 38 1 3.5732 3.3253 3.0716 39 1 2.0715 6.3726 3.3288 40 1 3.1284 5.3639 4.3644 41 1 5.1070 7.0408 5.4795 42 1 3.7845 7.5867 7.7632 43 1 4.7829 8.9897 7.3125 44 1 2.3163 11.2214 12.3147 45 1 7.2862 6.4144 3.4409 46 1 5.3918 4.5618 3.1043 47 1 5.5023 5.1568 1.4188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219216445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:14 Heat of formation + Delta-G solvation = -73.807307 kcal Electronic energy + Delta-G solvation = -24898.231950 eV Core-core repulsion = 21207.215083 eV Total energy + Delta-G solvation = -3691.016867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.28574 -38.60945 -37.10833 -36.10142 -34.32415 -32.96480 -32.41333 -30.63096 -29.30871 -28.30485 -27.10458 -25.57665 -24.09537 -22.38026 -21.40369 -20.98037 -20.33077 -19.97595 -18.00766 -17.69651 -16.78529 -16.10588 -15.80438 -15.61059 -15.29887 -14.98536 -14.97135 -14.85203 -14.50624 -14.12239 -13.87142 -13.76431 -13.51011 -13.17350 -13.06244 -12.76988 -12.58136 -12.50693 -12.38721 -12.05507 -11.87772 -11.57473 -11.44832 -11.40931 -11.24649 -11.20776 -11.02178 -10.98743 -10.56150 -10.38942 -9.83545 -9.50485 -9.37242 -9.01515 -8.96947 -8.82056 -8.47039 -6.88695 -6.26600 -3.97942 1.83582 2.75149 2.99742 3.17261 3.34867 3.52080 3.53773 3.82435 3.91228 4.21410 4.30304 4.35478 4.43662 4.60547 4.72724 4.74578 4.78659 4.87212 4.91871 4.96903 5.05135 5.06111 5.10679 5.12473 5.23966 5.32407 5.35559 5.41784 5.44828 5.50141 5.59542 5.62720 5.69444 5.76178 5.79905 5.81873 5.87416 6.07031 6.30064 6.33244 6.47759 6.58657 6.61350 7.25121 7.74951 7.96602 8.44323 8.55628 9.19638 10.82657 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.002039 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.504022 B =13732.145090 C =14868.387203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.156 4.156 4 C -0.159 4.159 5 C -0.083 4.083 6 C 0.050 3.950 7 N -0.506 5.506 8 C 0.021 3.979 9 C 0.153 3.847 10 H 0.105 0.895 11 N -0.718 5.718 12 C 0.531 3.469 13 O -0.522 6.522 14 C -0.122 4.122 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.094 3.906 25 H 0.078 0.922 26 O -0.559 6.559 27 C -0.001 4.001 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.409 0.591 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.270 0.730 45 H 0.383 0.617 46 H 0.057 0.943 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 -19.544 -25.022 32.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.174 4.174 4 C -0.178 4.178 5 C -0.121 4.121 6 C -0.079 4.079 7 N -0.230 5.230 8 C -0.108 4.108 9 C 0.047 3.953 10 H 0.123 0.877 11 N -0.374 5.374 12 C 0.317 3.683 13 O -0.397 6.397 14 C -0.273 4.273 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.518 5.518 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C 0.034 3.966 25 H 0.096 0.904 26 O -0.364 6.364 27 C -0.130 4.130 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.246 0.754 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.232 0.768 46 H 0.075 0.925 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.885 -18.166 -25.801 31.686 hybrid contribution 1.569 -1.056 1.251 2.268 sum 4.454 -19.222 -24.549 31.496 Atomic orbital electron populations 1.21719 0.95077 1.01667 1.02178 1.20651 0.96261 0.94337 1.02178 1.22909 0.98087 0.97274 0.99149 1.22816 0.98957 0.96892 0.99129 1.20611 1.01230 0.92573 0.97667 1.22241 1.01062 0.87784 0.96783 1.65339 1.05737 1.13753 1.38204 1.23634 1.00443 0.94986 0.91705 1.21608 0.92541 0.98455 0.82744 0.87727 1.45765 1.31123 1.50580 1.09927 1.20329 0.82126 0.77501 0.88362 1.90691 1.28382 1.49512 1.71079 1.23263 1.05273 1.04802 0.93974 1.84758 1.35884 1.59517 1.11388 1.22331 1.16416 1.35397 0.92708 0.89400 1.24715 0.97402 0.95213 0.94010 1.69946 1.39797 1.38756 1.03253 0.86728 0.83391 0.80123 0.81561 1.19239 1.19969 1.15905 1.22800 0.86997 0.95260 0.91570 0.90406 1.86389 1.20161 1.91098 1.38775 1.23928 0.90313 0.97332 1.01404 0.92511 0.92582 0.92613 0.91250 0.91708 0.87302 0.87557 0.91282 0.90636 0.90347 0.94258 0.88786 0.92787 0.75436 0.88605 0.88408 0.91981 0.76826 0.92495 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.45 16 2 C -0.10 -0.55 6.38 -27.88 -0.18 -0.73 16 3 C -0.16 -1.01 9.12 -36.03 -0.33 -1.34 16 4 C -0.16 -1.07 9.12 -36.02 -0.33 -1.40 16 5 C -0.08 -0.57 5.77 -27.88 -0.16 -0.73 16 6 C 0.05 0.40 4.81 -3.83 -0.02 0.39 16 7 N -0.51 -4.65 5.34 -229.97 -1.23 -5.87 16 8 C 0.02 0.24 6.17 -2.18 -0.01 0.23 16 9 C 0.15 1.83 3.36 -66.55 -0.22 1.61 16 10 H 0.10 1.42 7.64 -51.93 -0.40 1.02 16 11 N -0.72 -9.94 4.90 -52.47 -0.26 -10.20 16 12 C 0.53 9.73 7.84 -10.98 -0.09 9.64 16 13 O -0.52 -11.34 15.56 5.56 0.09 -11.25 16 14 C -0.12 -2.45 6.16 36.00 0.22 -2.23 16 15 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 16 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 17 H 0.09 2.68 8.03 -52.49 -0.42 2.25 16 18 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.82 13.97 55.49 0.78 -26.04 16 20 Si 0.86 22.02 27.74 -169.99 -4.71 17.31 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 24 C 0.09 0.80 4.42 -25.35 -0.11 0.68 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 26 O -0.56 -4.44 11.50 -35.23 -0.41 -4.84 16 27 C 0.00 -0.01 5.66 -2.18 -0.01 -0.02 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 7.79 -51.93 -0.40 -0.05 16 33 H 0.11 0.68 7.84 -52.48 -0.41 0.27 16 34 H 0.11 0.67 7.84 -52.49 -0.41 0.26 16 35 H 0.07 0.44 7.47 -51.93 -0.39 0.06 16 36 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 37 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.04 0.32 7.77 -51.93 -0.40 -0.08 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.64 7.91 -51.92 -0.41 0.23 16 41 H 0.41 5.06 7.18 -40.82 -0.29 4.77 16 42 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 43 H 0.10 1.85 8.14 -51.92 -0.42 1.42 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.38 1.34 9.12 45.56 0.42 1.76 16 46 H 0.06 0.43 7.69 -51.93 -0.40 0.03 16 47 H 0.09 0.51 7.85 -51.92 -0.41 0.10 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -34.17 396.19 -9.72 -43.89 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.29 Total: 3.22 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.66 Total: -6.54 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.71 Total: -42.11 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.32 Total: -16.09 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.17 -9.72 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.915 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds