Wall clock time and date at job start Tue Mar 31 2020 15:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47240 * 2 1 4 4 C 1.30998 * 120.00194 * 125.00045 * 3 2 1 5 5 C 1.50701 * 119.99872 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47212 * 124.99896 * 5 4 3 7 7 N 1.46894 * 109.47515 * 179.97438 * 6 5 4 8 8 C 1.48558 * 111.00572 * 169.99829 * 7 6 5 9 9 C 1.54381 * 104.59714 * 159.04108 * 8 7 6 10 10 H 1.08997 * 110.31954 * 95.15012 * 9 8 7 11 11 N 1.46499 * 110.32193 * 217.25421 * 9 8 7 12 12 C 1.34785 * 120.00067 * 273.54543 * 11 9 8 13 13 O 1.21278 * 119.99715 * 0.02562 * 12 11 9 14 14 C 1.50696 * 119.99861 * 180.02562 * 12 11 9 15 15 S 1.81005 * 109.46911 * 180.02562 * 14 12 11 16 16 C 1.76200 * 99.99973 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99660 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99731 * 180.02562 * 16 15 14 19 19 N 1.31637 * 119.99785 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00348 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47454 * 90.00258 * 20 18 16 22 22 H 1.48504 * 109.47301 * 210.00306 * 20 18 16 23 23 H 1.48504 * 109.47016 * 330.00235 * 20 18 16 24 24 C 1.54252 * 105.06062 * 336.14937 * 9 8 7 25 25 H 1.08999 * 110.32575 * 118.89765 * 24 9 8 26 26 O 1.42901 * 110.32590 * 241.00163 * 24 9 8 27 27 C 1.48557 * 111.00159 * 285.41911 * 7 6 5 28 28 H 1.09004 * 109.47344 * 300.00514 * 1 2 3 29 29 H 1.09003 * 109.46902 * 59.99909 * 1 2 3 30 30 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46877 * 239.99443 * 2 1 3 32 32 H 1.09004 * 109.46932 * 119.99537 * 2 1 3 33 33 H 1.08005 * 119.99624 * 304.99604 * 3 2 1 34 34 H 1.07995 * 120.00180 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.47060 * 244.99951 * 5 4 3 36 36 H 1.09001 * 109.47380 * 5.00038 * 5 4 3 37 37 H 1.09002 * 109.47153 * 299.99998 * 6 5 4 38 38 H 1.08998 * 109.47533 * 59.99628 * 6 5 4 39 39 H 1.09005 * 110.41285 * 277.82645 * 8 7 6 40 40 H 1.09009 * 110.40984 * 40.26353 * 8 7 6 41 41 H 0.96995 * 120.00103 * 93.54726 * 11 9 8 42 42 H 1.09002 * 109.47406 * 299.99833 * 14 12 11 43 43 H 1.09004 * 109.47008 * 60.00150 * 14 12 11 44 44 H 0.96998 * 119.99820 * 179.97438 * 19 18 16 45 45 H 0.96703 * 114.00467 * 179.97438 * 26 24 9 46 46 H 1.08996 * 110.41165 * 319.73567 * 27 7 6 47 47 H 1.09013 * 110.40992 * 82.17947 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8642 1.8214 0.9293 5 6 3.3670 3.2421 0.9289 6 6 3.0719 3.8879 2.2841 7 7 3.5625 5.2725 2.2840 8 6 3.0863 6.0063 3.4847 9 6 4.0685 7.1880 3.6335 10 1 3.6630 8.0797 3.1556 11 7 4.3396 7.4491 5.0493 12 6 3.5226 8.2569 5.7541 13 8 2.5628 8.7671 5.2163 14 6 3.8018 8.5259 7.2103 15 16 2.5361 9.6380 7.8719 16 6 3.0926 9.7783 9.5378 17 1 3.9791 9.2505 9.8572 18 6 2.3910 10.5661 10.4397 19 7 2.8064 10.6705 11.6845 20 14 0.8574 11.4783 9.8874 21 1 -0.3335 10.6159 10.0954 22 1 0.7103 12.7251 10.6806 23 1 0.9761 11.8192 8.4469 24 6 5.3559 6.7317 2.9168 25 1 5.5833 7.3991 2.0855 26 8 6.4494 6.6951 3.8360 27 6 5.0433 5.3127 2.3952 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7066 2.1087 -0.7663 34 1 3.1897 1.1337 1.6957 35 1 4.4423 3.2469 0.7506 36 1 2.8656 3.8048 0.1414 37 1 1.9965 3.8831 2.4624 38 1 3.5732 3.3253 3.0716 39 1 2.0715 6.3726 3.3288 40 1 3.1284 5.3639 4.3644 41 1 5.1070 7.0408 5.4795 42 1 3.7845 7.5867 7.7632 43 1 4.7829 8.9897 7.3125 44 1 2.3163 11.2214 12.3147 45 1 7.2862 6.4144 3.4409 46 1 5.3918 4.5618 3.1043 47 1 5.5023 5.1568 1.4188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219216445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:13 Heat of formation + Delta-G solvation = -99.656176 kcal Electronic energy + Delta-G solvation = -24899.352841 eV Core-core repulsion = 21207.215083 eV Total energy + Delta-G solvation = -3692.137758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29113 -39.80693 -37.70323 -36.67638 -35.41113 -34.67662 -33.68422 -31.69355 -30.33452 -29.09061 -28.04329 -27.74889 -24.71485 -22.96941 -22.39157 -21.77788 -21.42468 -20.48904 -19.93120 -18.63606 -17.96351 -17.27636 -17.11549 -16.72203 -16.52584 -16.21273 -15.88577 -15.69206 -15.40722 -15.22230 -15.01189 -14.84283 -14.71196 -14.32723 -13.98588 -13.78175 -13.70598 -13.35071 -13.15065 -13.09422 -13.01549 -12.91088 -12.68020 -12.61943 -12.34044 -12.14140 -11.88145 -11.85851 -11.80517 -11.56135 -11.17556 -11.05485 -10.99740 -10.55134 -10.17834 -9.87372 -9.60125 -9.00381 -8.52015 -6.23053 0.97192 1.31140 1.32945 1.46025 1.53052 1.54510 2.10493 2.24965 2.67189 2.86051 2.93098 3.20499 3.47858 3.56569 3.87586 3.92774 4.04084 4.08284 4.16958 4.20014 4.21320 4.28974 4.40950 4.44756 4.46124 4.50656 4.54744 4.59800 4.71708 4.81237 4.83581 4.90186 4.93354 5.02623 5.08532 5.15780 5.18613 5.33623 5.36381 5.68521 5.70233 5.82270 5.90733 5.97671 6.10735 6.47863 6.84295 6.92915 7.20730 8.60436 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.002039 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.504022 B =13732.145090 C =14868.387203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.159 4.159 4 C -0.166 4.166 5 C -0.074 4.074 6 C 0.051 3.949 7 N -0.509 5.509 8 C 0.027 3.973 9 C 0.143 3.857 10 H 0.087 0.913 11 N -0.695 5.695 12 C 0.535 3.465 13 O -0.560 6.560 14 C -0.111 4.111 15 S -0.171 6.171 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.046 3.954 19 N -0.916 5.916 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.258 1.258 23 H -0.237 1.237 24 C 0.106 3.894 25 H 0.093 0.907 26 O -0.572 6.572 27 C 0.005 3.995 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.419 0.581 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.277 0.723 45 H 0.405 0.595 46 H 0.061 0.939 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.005 -20.625 -26.915 34.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C -0.177 4.177 4 C -0.184 4.184 5 C -0.112 4.112 6 C -0.077 4.077 7 N -0.234 5.234 8 C -0.102 4.102 9 C 0.037 3.963 10 H 0.105 0.895 11 N -0.350 5.350 12 C 0.321 3.679 13 O -0.439 6.439 14 C -0.261 4.261 15 S 0.055 5.945 16 C -0.678 4.678 17 H 0.079 0.921 18 C -0.160 4.160 19 N -0.554 5.554 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.182 1.182 23 H -0.161 1.161 24 C 0.046 3.954 25 H 0.111 0.889 26 O -0.381 6.381 27 C -0.123 4.123 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.258 0.742 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.087 0.913 45 H 0.258 0.742 46 H 0.079 0.921 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.795 -19.289 -27.712 33.977 hybrid contribution 1.432 -0.846 1.776 2.433 sum 5.228 -20.135 -25.936 33.248 Atomic orbital electron populations 1.21722 0.95039 1.02083 1.01824 1.20676 0.96281 0.93921 1.02618 1.23039 0.97830 0.97776 0.99091 1.22853 0.99286 0.96878 0.99412 1.20523 1.01783 0.92407 0.96479 1.22240 1.00415 0.87292 0.97736 1.65351 1.07126 1.14211 1.36701 1.23433 0.99425 0.94904 0.92470 1.21795 0.95123 0.98119 0.81263 0.89508 1.45544 1.30126 1.48668 1.10661 1.19990 0.82230 0.78031 0.87673 1.90682 1.30174 1.51477 1.71542 1.23249 1.03618 1.04009 0.95268 1.84661 1.38669 1.61796 1.09341 1.22470 1.15622 1.35005 0.94752 0.92063 1.25571 1.00288 0.96025 0.94088 1.70020 1.41322 1.39753 1.04334 0.85857 0.79777 0.79533 0.81137 1.18655 1.18219 1.16080 1.22665 0.85587 0.96015 0.91170 0.88927 1.86321 1.21164 1.91348 1.39238 1.23975 0.88917 0.96632 1.02759 0.93357 0.92438 0.91845 0.90461 0.91605 0.87270 0.87198 0.90262 0.91155 0.91502 0.94035 0.90759 0.93472 0.74205 0.87131 0.87050 0.91347 0.74247 0.92118 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.10 -0.98 6.38 29.85 0.19 -0.79 16 3 C -0.16 -1.88 9.12 25.65 0.23 -1.64 16 4 C -0.17 -1.98 9.12 25.65 0.23 -1.75 16 5 C -0.07 -0.89 5.77 29.85 0.17 -0.72 16 6 C 0.05 0.77 4.81 86.30 0.42 1.18 16 7 N -0.51 -8.54 5.34 -881.49 -4.70 -13.24 16 8 C 0.03 0.60 6.17 86.45 0.53 1.13 16 9 C 0.14 3.26 3.36 45.88 0.15 3.41 16 10 H 0.09 2.33 7.64 -2.39 -0.02 2.31 16 11 N -0.70 -18.33 4.90 -438.31 -2.15 -20.47 16 12 C 0.54 19.28 7.84 87.65 0.69 19.97 16 13 O -0.56 -24.44 15.56 -3.02 -0.05 -24.48 16 14 C -0.11 -4.35 6.16 71.23 0.44 -3.91 16 15 S -0.17 -8.83 18.55 -56.49 -1.05 -9.88 16 16 C -0.53 -31.44 10.04 67.95 0.68 -30.76 16 17 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 18 C 0.05 2.72 5.50 84.86 0.47 3.18 16 19 N -0.92 -56.31 13.97 21.65 0.30 -56.01 16 20 Si 0.92 45.51 27.74 68.60 1.90 47.41 16 21 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 24 C 0.11 1.51 4.42 31.49 0.14 1.64 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 O -0.57 -7.26 11.50 -148.98 -1.71 -8.97 16 27 C 0.01 0.06 5.66 86.45 0.49 0.55 16 28 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.64 7.79 -2.38 -0.02 0.63 16 33 H 0.11 1.26 7.84 -2.91 -0.02 1.23 16 34 H 0.11 1.23 7.84 -2.91 -0.02 1.21 16 35 H 0.08 0.79 7.47 -2.39 -0.02 0.78 16 36 H 0.07 0.93 7.79 -2.39 -0.02 0.91 16 37 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 38 H 0.04 0.61 7.77 -2.39 -0.02 0.59 16 39 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.05 1.10 7.91 -2.38 -0.02 1.08 16 41 H 0.42 9.48 7.18 -92.71 -0.67 8.82 16 42 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 43 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 44 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.41 1.33 9.12 -74.06 -0.68 0.65 16 46 H 0.06 0.71 7.69 -2.39 -0.02 0.69 16 47 H 0.11 0.85 7.85 -2.38 -0.02 0.83 16 Total: -1.00 -74.09 396.19 -2.32 -76.41 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -0.42 Total: 18.51 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.55 Total: -9.27 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -6.55 Total: -89.73 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.76 Total: -33.46 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -74.09 -2.32 -76.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.246 kcal (2) G-P(sol) polarization free energy of solvation -74.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds