Wall clock time and date at job start Tue Mar 31 2020 15:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.47146 * 2 1 4 4 C 1.31000 * 119.99861 * 126.39817 * 3 2 1 5 5 C 1.50698 * 120.00191 * 7.33063 * 4 3 2 6 6 C 1.52998 * 109.47694 * 127.62450 * 5 4 3 7 7 N 1.46894 * 109.47496 * 179.97438 * 6 5 4 8 8 C 1.48566 * 111.00184 * 169.99841 * 7 6 5 9 9 C 1.54377 * 104.59654 * 159.04066 * 8 7 6 10 10 H 1.09000 * 110.32313 * 95.14401 * 9 8 7 11 11 N 1.46499 * 110.32385 * 217.25456 * 9 8 7 12 12 C 1.34782 * 119.99944 * 273.54462 * 11 9 8 13 13 O 1.21288 * 119.99612 * 0.02562 * 12 11 9 14 14 C 1.50693 * 119.99914 * 180.02562 * 12 11 9 15 15 S 1.81005 * 109.46918 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99904 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00127 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99956 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99917 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47109 * 90.00227 * 20 18 16 22 22 H 1.48497 * 109.47419 * 210.00547 * 20 18 16 23 23 H 1.48506 * 109.47278 * 330.00682 * 20 18 16 24 24 C 1.54266 * 105.05707 * 336.14704 * 9 8 7 25 25 H 1.09005 * 110.31916 * 118.89757 * 24 9 8 26 26 O 1.42897 * 110.32104 * 240.99978 * 24 9 8 27 27 C 1.48559 * 111.00207 * 285.41859 * 7 6 5 28 28 H 1.08999 * 109.47181 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47676 * 300.00038 * 1 2 3 30 30 H 1.09007 * 109.47197 * 60.00087 * 1 2 3 31 31 H 1.09000 * 109.47676 * 239.99962 * 2 1 3 32 32 H 1.08998 * 109.47022 * 120.00068 * 2 1 3 33 33 H 1.07997 * 120.00111 * 306.40069 * 3 2 1 34 34 H 1.08004 * 120.00397 * 187.60090 * 4 3 2 35 35 H 1.09004 * 109.47295 * 247.62254 * 5 4 3 36 36 H 1.09002 * 109.47267 * 7.61992 * 5 4 3 37 37 H 1.09004 * 109.46590 * 300.00235 * 6 5 4 38 38 H 1.09002 * 109.47137 * 59.99462 * 6 5 4 39 39 H 1.08995 * 110.41040 * 277.82188 * 8 7 6 40 40 H 1.09005 * 110.40770 * 40.26276 * 8 7 6 41 41 H 0.96997 * 120.00126 * 93.54517 * 11 9 8 42 42 H 1.09001 * 109.47333 * 299.99520 * 14 12 11 43 43 H 1.08995 * 109.47255 * 59.99986 * 14 12 11 44 44 H 0.97004 * 120.00084 * 179.97438 * 19 18 16 45 45 H 0.96703 * 113.99691 * 180.02562 * 26 24 9 46 46 H 1.09004 * 110.40715 * 319.73968 * 27 7 6 47 47 H 1.08995 * 110.41293 * 82.17909 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8853 1.8139 0.9132 5 6 3.4907 0.8105 1.8606 6 6 5.0147 0.9439 1.8394 7 7 5.6048 -0.0338 2.7633 8 6 7.0795 -0.1019 2.5960 9 6 7.5937 -0.7066 3.9201 10 1 7.7181 -1.7849 3.8207 11 7 8.8616 -0.0823 4.3061 12 6 10.0246 -0.5667 3.8271 13 8 10.0213 -1.5192 3.0763 14 6 11.3288 0.0751 4.2246 15 16 12.6985 -0.7954 3.4230 16 6 14.0586 0.1368 4.0440 17 1 13.8841 0.9668 4.7127 18 6 15.3543 -0.1948 3.6730 19 7 16.3704 0.5020 4.1365 20 14 15.6562 -1.6298 2.5159 21 1 15.6435 -1.1451 1.1122 22 1 16.9764 -2.2394 2.8171 23 1 14.5886 -2.6459 2.6982 24 6 6.4999 -0.3847 4.9592 25 1 6.0857 -1.3054 5.3704 26 8 7.0334 0.4293 6.0055 27 6 5.4168 0.3872 4.1755 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.6890 2.1149 -0.7528 34 1 3.1514 2.8578 0.9900 35 1 3.1238 0.9964 2.8700 36 1 3.2098 -0.1964 1.5516 37 1 5.3817 0.7580 0.8300 38 1 5.2957 1.9508 2.1483 39 1 7.3374 -0.7485 1.7573 40 1 7.4918 0.8963 2.4485 41 1 8.8641 0.6797 4.9062 42 1 11.3300 1.1194 3.9121 43 1 11.4462 0.0196 5.3068 44 1 17.2760 0.2700 3.8775 45 1 6.3902 0.6632 6.6886 46 1 5.5689 1.4620 4.2752 47 1 4.4230 0.1090 4.5261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219216446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:17 Heat of formation + Delta-G solvation = -65.794664 kcal Electronic energy + Delta-G solvation = -25077.576915 eV Core-core repulsion = 21386.907502 eV Total energy + Delta-G solvation = -3690.669412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29084 -38.63177 -37.38545 -36.15115 -34.24381 -32.56809 -32.41269 -30.60729 -29.33545 -28.34428 -27.10399 -25.57527 -23.86305 -23.35422 -21.46904 -21.14676 -20.34063 -18.68056 -18.00999 -17.69870 -16.79361 -16.30230 -16.03151 -15.67402 -15.31170 -15.11830 -14.94556 -14.73313 -14.42135 -14.28551 -13.95779 -13.71743 -13.48340 -13.28768 -13.04666 -12.77096 -12.60388 -12.46044 -12.37189 -12.01571 -11.97972 -11.51598 -11.45267 -11.34593 -11.24321 -11.17249 -10.98760 -10.69854 -10.56180 -10.38899 -9.83541 -9.50409 -9.33012 -9.01390 -8.96905 -8.82135 -8.47042 -6.88702 -6.26604 -3.97941 1.82234 2.75207 2.99734 3.17422 3.34870 3.52130 3.53870 3.83065 3.91422 4.21716 4.32255 4.35477 4.40960 4.66987 4.72489 4.74536 4.78661 4.86061 4.88179 4.96517 5.05083 5.09294 5.12504 5.21123 5.24136 5.29135 5.32188 5.41765 5.44505 5.52124 5.61962 5.69454 5.72601 5.77576 5.81213 5.81809 5.87145 6.07074 6.28075 6.35308 6.49143 6.58784 6.61564 7.25086 7.74947 7.96541 8.44334 8.55630 9.19645 10.82649 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.002008 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.275294 B =13942.804442 C =14640.233403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.156 4.156 4 C -0.161 4.161 5 C -0.093 4.093 6 C 0.051 3.949 7 N -0.505 5.505 8 C 0.021 3.979 9 C 0.153 3.847 10 H 0.105 0.895 11 N -0.718 5.718 12 C 0.531 3.469 13 O -0.522 6.522 14 C -0.123 4.123 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.094 3.906 25 H 0.078 0.922 26 O -0.559 6.559 27 C -0.001 4.001 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.409 0.591 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.270 0.730 45 H 0.383 0.617 46 H 0.057 0.943 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.281 2.260 -1.497 32.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.174 4.174 4 C -0.179 4.179 5 C -0.130 4.130 6 C -0.078 4.078 7 N -0.230 5.230 8 C -0.108 4.108 9 C 0.047 3.953 10 H 0.123 0.877 11 N -0.374 5.374 12 C 0.317 3.683 13 O -0.397 6.397 14 C -0.273 4.273 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C 0.034 3.966 25 H 0.096 0.904 26 O -0.364 6.364 27 C -0.130 4.130 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.246 0.754 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.232 0.768 46 H 0.075 0.925 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -31.793 0.133 -3.196 31.954 hybrid contribution 0.212 2.078 1.097 2.360 sum -31.581 2.212 -2.098 31.728 Atomic orbital electron populations 1.21692 0.95189 1.01659 1.01811 1.20845 0.96010 0.94709 1.03037 1.22827 0.98552 0.97591 0.98410 1.22752 0.98540 0.99200 0.97436 1.20784 0.93960 0.99407 0.98897 1.22219 0.94669 0.93464 0.97401 1.65335 1.10694 1.44618 1.02349 1.23631 0.87036 1.01041 0.99054 1.21611 0.82729 0.99431 0.91576 0.87726 1.45764 1.04323 1.36135 1.51165 1.20330 0.84790 0.83377 0.79821 1.90694 1.87037 1.27003 1.34938 1.23261 0.95140 1.03773 1.05139 1.84757 0.97877 1.44676 1.64231 1.22332 0.91235 1.18884 1.34428 0.89403 1.24712 0.94846 0.96371 0.95381 1.69942 0.99038 1.39344 1.43425 0.86732 0.79600 0.83793 0.81699 1.19237 1.19966 1.15903 1.22801 0.92730 0.93405 0.87694 0.90412 1.86390 1.41242 1.72003 1.36785 1.23923 0.99918 0.98885 0.90241 0.92541 0.92746 0.92802 0.91236 0.90316 0.87428 0.87473 0.91460 0.89572 0.90352 0.94312 0.88780 0.92789 0.75436 0.88606 0.88411 0.91979 0.76830 0.92505 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.15 0.37 -0.40 16 2 C -0.11 -0.66 6.04 -27.89 -0.17 -0.83 16 3 C -0.16 -1.01 9.51 -36.03 -0.34 -1.36 16 4 C -0.16 -1.08 9.51 -36.03 -0.34 -1.42 16 5 C -0.09 -0.64 5.42 -27.88 -0.15 -0.79 16 6 C 0.05 0.41 4.81 -3.83 -0.02 0.39 16 7 N -0.51 -4.60 5.34 -229.98 -1.23 -5.83 16 8 C 0.02 0.24 6.17 -2.18 -0.01 0.23 16 9 C 0.15 1.82 3.36 -66.55 -0.22 1.60 16 10 H 0.10 1.41 7.64 -51.93 -0.40 1.02 16 11 N -0.72 -9.91 4.90 -52.46 -0.26 -10.17 16 12 C 0.53 9.71 7.84 -10.99 -0.09 9.63 16 13 O -0.52 -11.32 15.56 5.55 0.09 -11.23 16 14 C -0.12 -2.45 6.16 36.00 0.22 -2.23 16 15 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 16 C -0.52 -15.23 10.04 30.94 0.31 -14.91 16 17 H 0.09 2.68 8.03 -52.49 -0.42 2.25 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 19 N -0.88 -26.81 13.97 55.49 0.78 -26.04 16 20 Si 0.86 22.01 27.74 -169.99 -4.71 17.29 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 24 C 0.09 0.79 4.42 -25.35 -0.11 0.68 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 O -0.56 -4.42 11.50 -35.23 -0.41 -4.83 16 27 C 0.00 -0.01 5.66 -2.19 -0.01 -0.02 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.49 5.27 -51.93 -0.27 0.21 16 33 H 0.11 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.11 0.67 8.06 -52.48 -0.42 0.24 16 35 H 0.07 0.44 7.47 -51.93 -0.39 0.05 16 36 H 0.09 0.62 5.29 -51.93 -0.27 0.35 16 37 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.04 0.32 7.77 -51.93 -0.40 -0.09 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 41 H 0.41 5.05 7.18 -40.82 -0.29 4.76 16 42 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 43 H 0.10 1.85 8.14 -51.92 -0.42 1.42 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.38 1.34 9.12 45.56 0.42 1.75 16 46 H 0.06 0.43 7.69 -51.93 -0.40 0.03 16 47 H 0.09 0.51 7.85 -51.93 -0.41 0.10 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -34.16 391.69 -9.56 -43.72 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.06 Total: 3.53 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.67 Total: -6.70 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.71 Total: -42.03 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.32 Total: -16.06 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.16 -9.56 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.074 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds