Wall clock time and date at job start Tue Mar 31 2020 15:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.47146 * 2 1 4 4 C 1.31000 * 119.99861 * 126.39817 * 3 2 1 5 5 C 1.50698 * 120.00191 * 7.33063 * 4 3 2 6 6 C 1.52998 * 109.47694 * 127.62450 * 5 4 3 7 7 N 1.46894 * 109.47496 * 179.97438 * 6 5 4 8 8 C 1.48566 * 111.00184 * 169.99841 * 7 6 5 9 9 C 1.54377 * 104.59654 * 159.04066 * 8 7 6 10 10 H 1.09000 * 110.32313 * 95.14401 * 9 8 7 11 11 N 1.46499 * 110.32385 * 217.25456 * 9 8 7 12 12 C 1.34782 * 119.99944 * 273.54462 * 11 9 8 13 13 O 1.21288 * 119.99612 * 0.02562 * 12 11 9 14 14 C 1.50693 * 119.99914 * 180.02562 * 12 11 9 15 15 S 1.81005 * 109.46918 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99904 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00127 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99956 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99917 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47109 * 90.00227 * 20 18 16 22 22 H 1.48497 * 109.47419 * 210.00547 * 20 18 16 23 23 H 1.48506 * 109.47278 * 330.00682 * 20 18 16 24 24 C 1.54266 * 105.05707 * 336.14704 * 9 8 7 25 25 H 1.09005 * 110.31916 * 118.89757 * 24 9 8 26 26 O 1.42897 * 110.32104 * 240.99978 * 24 9 8 27 27 C 1.48559 * 111.00207 * 285.41859 * 7 6 5 28 28 H 1.08999 * 109.47181 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47676 * 300.00038 * 1 2 3 30 30 H 1.09007 * 109.47197 * 60.00087 * 1 2 3 31 31 H 1.09000 * 109.47676 * 239.99962 * 2 1 3 32 32 H 1.08998 * 109.47022 * 120.00068 * 2 1 3 33 33 H 1.07997 * 120.00111 * 306.40069 * 3 2 1 34 34 H 1.08004 * 120.00397 * 187.60090 * 4 3 2 35 35 H 1.09004 * 109.47295 * 247.62254 * 5 4 3 36 36 H 1.09002 * 109.47267 * 7.61992 * 5 4 3 37 37 H 1.09004 * 109.46590 * 300.00235 * 6 5 4 38 38 H 1.09002 * 109.47137 * 59.99462 * 6 5 4 39 39 H 1.08995 * 110.41040 * 277.82188 * 8 7 6 40 40 H 1.09005 * 110.40770 * 40.26276 * 8 7 6 41 41 H 0.96997 * 120.00126 * 93.54517 * 11 9 8 42 42 H 1.09001 * 109.47333 * 299.99520 * 14 12 11 43 43 H 1.08995 * 109.47255 * 59.99986 * 14 12 11 44 44 H 0.97004 * 120.00084 * 179.97438 * 19 18 16 45 45 H 0.96703 * 113.99691 * 180.02562 * 26 24 9 46 46 H 1.09004 * 110.40715 * 319.73968 * 27 7 6 47 47 H 1.08995 * 110.41293 * 82.17909 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8853 1.8139 0.9132 5 6 3.4907 0.8105 1.8606 6 6 5.0147 0.9439 1.8394 7 7 5.6048 -0.0338 2.7633 8 6 7.0795 -0.1019 2.5960 9 6 7.5937 -0.7066 3.9201 10 1 7.7181 -1.7849 3.8207 11 7 8.8616 -0.0823 4.3061 12 6 10.0246 -0.5667 3.8271 13 8 10.0213 -1.5192 3.0763 14 6 11.3288 0.0751 4.2246 15 16 12.6985 -0.7954 3.4230 16 6 14.0586 0.1368 4.0440 17 1 13.8841 0.9668 4.7127 18 6 15.3543 -0.1948 3.6730 19 7 16.3704 0.5020 4.1365 20 14 15.6562 -1.6298 2.5159 21 1 15.6435 -1.1451 1.1122 22 1 16.9764 -2.2394 2.8171 23 1 14.5886 -2.6459 2.6982 24 6 6.4999 -0.3847 4.9592 25 1 6.0857 -1.3054 5.3704 26 8 7.0334 0.4293 6.0055 27 6 5.4168 0.3872 4.1755 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.6890 2.1149 -0.7528 34 1 3.1514 2.8578 0.9900 35 1 3.1238 0.9964 2.8700 36 1 3.2098 -0.1964 1.5516 37 1 5.3817 0.7580 0.8300 38 1 5.2957 1.9508 2.1483 39 1 7.3374 -0.7485 1.7573 40 1 7.4918 0.8963 2.4485 41 1 8.8641 0.6797 4.9062 42 1 11.3300 1.1194 3.9121 43 1 11.4462 0.0196 5.3068 44 1 17.2760 0.2700 3.8775 45 1 6.3902 0.6632 6.6886 46 1 5.5689 1.4620 4.2752 47 1 4.4230 0.1090 4.5261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219216446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:16 Heat of formation + Delta-G solvation = -91.773706 kcal Electronic energy + Delta-G solvation = -25078.703451 eV Core-core repulsion = 21386.907502 eV Total energy + Delta-G solvation = -3691.795948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28962 -39.81736 -37.96972 -36.75241 -35.37305 -34.67673 -33.27386 -31.61662 -30.36191 -29.11216 -28.06457 -27.75184 -24.44111 -23.91104 -22.42546 -21.96805 -21.49592 -19.93219 -19.19231 -18.63247 -17.96878 -17.30784 -17.11235 -16.74503 -16.67342 -16.42003 -16.04072 -15.70838 -15.27823 -15.25520 -14.98848 -14.82753 -14.79656 -14.25530 -14.19615 -13.77396 -13.70619 -13.35058 -13.20406 -13.01760 -12.90843 -12.90362 -12.74826 -12.65771 -12.25572 -12.15514 -11.90019 -11.84250 -11.75908 -11.20066 -11.17508 -11.05184 -10.99423 -10.55059 -10.17196 -9.83356 -9.59792 -9.00293 -8.51956 -6.22995 0.97332 1.31220 1.31579 1.46134 1.53270 1.54635 2.10814 2.25051 2.67362 2.86175 2.93817 3.21027 3.48312 3.57480 3.87895 3.91598 4.04642 4.13387 4.18359 4.20860 4.21830 4.26582 4.38564 4.42562 4.45420 4.52114 4.59162 4.66014 4.75380 4.79694 4.84182 4.90369 4.90616 5.02052 5.12095 5.22096 5.25425 5.34324 5.38125 5.68241 5.70222 5.82895 5.91126 5.99426 6.10751 6.48081 6.84393 6.92994 7.20942 8.60499 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.002008 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.275294 B =13942.804442 C =14640.233403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.159 4.159 4 C -0.168 4.168 5 C -0.085 4.085 6 C 0.053 3.947 7 N -0.508 5.508 8 C 0.027 3.973 9 C 0.143 3.857 10 H 0.087 0.913 11 N -0.695 5.695 12 C 0.535 3.465 13 O -0.560 6.560 14 C -0.111 4.111 15 S -0.171 6.171 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.046 3.954 19 N -0.916 5.916 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.258 1.258 23 H -0.237 1.237 24 C 0.106 3.894 25 H 0.093 0.907 26 O -0.572 6.572 27 C 0.005 3.995 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.419 0.581 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.277 0.723 45 H 0.405 0.595 46 H 0.060 0.940 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.562 2.224 -1.104 34.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.177 4.177 4 C -0.187 4.187 5 C -0.122 4.122 6 C -0.076 4.076 7 N -0.233 5.233 8 C -0.102 4.102 9 C 0.037 3.963 10 H 0.105 0.895 11 N -0.350 5.350 12 C 0.321 3.679 13 O -0.439 6.439 14 C -0.262 4.262 15 S 0.056 5.944 16 C -0.679 4.679 17 H 0.079 0.921 18 C -0.159 4.159 19 N -0.554 5.554 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.182 1.182 23 H -0.161 1.161 24 C 0.046 3.954 25 H 0.111 0.889 26 O -0.381 6.381 27 C -0.123 4.123 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.258 0.742 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.087 0.913 45 H 0.257 0.743 46 H 0.078 0.922 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -34.123 0.136 -2.760 34.235 hybrid contribution 0.781 2.193 1.051 2.554 sum -33.342 2.329 -1.710 33.467 Atomic orbital electron populations 1.21682 0.94541 1.02044 1.01932 1.20869 0.96600 0.94439 1.02888 1.22975 0.98441 0.97945 0.98370 1.22812 0.98778 0.99445 0.97630 1.20695 0.92770 0.99286 0.99452 1.22216 0.95499 0.93206 0.96641 1.65347 1.08834 1.45378 1.03711 1.23432 0.88760 1.00020 0.98017 1.21800 0.82562 0.98378 0.93559 0.89482 1.45544 1.03830 1.35700 1.49920 1.19988 0.85307 0.82926 0.79699 1.90685 1.87507 1.28762 1.36917 1.23247 0.93777 1.03826 1.05301 1.84658 0.99075 1.45494 1.65220 1.22473 0.92906 1.18548 1.33972 0.92076 1.25565 0.94677 0.98829 0.96844 1.70017 0.99714 1.40958 1.44741 0.85861 0.79991 0.80704 0.79773 1.18658 1.18214 1.16072 1.22667 0.91093 0.94445 0.87230 0.88912 1.86322 1.42582 1.71868 1.37305 1.23968 1.00694 0.98911 0.88702 0.92052 0.92760 0.92538 0.91423 0.90439 0.86877 0.87041 0.90568 0.89917 0.91465 0.94146 0.90719 0.93497 0.74213 0.87144 0.87056 0.91345 0.74259 0.92182 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.89 71.98 0.71 -0.61 16 2 C -0.11 -1.21 6.04 29.85 0.18 -1.03 16 3 C -0.16 -1.87 9.51 25.65 0.24 -1.63 16 4 C -0.17 -2.01 9.51 25.65 0.24 -1.77 16 5 C -0.08 -1.01 5.42 29.85 0.16 -0.85 16 6 C 0.05 0.78 4.81 86.30 0.42 1.20 16 7 N -0.51 -8.43 5.34 -881.51 -4.71 -13.13 16 8 C 0.03 0.60 6.17 86.45 0.53 1.13 16 9 C 0.14 3.24 3.36 45.89 0.15 3.39 16 10 H 0.09 2.32 7.64 -2.39 -0.02 2.31 16 11 N -0.70 -18.28 4.90 -438.28 -2.15 -20.42 16 12 C 0.54 19.25 7.84 87.65 0.69 19.93 16 13 O -0.56 -24.38 15.56 -3.06 -0.05 -24.43 16 14 C -0.11 -4.35 6.16 71.23 0.44 -3.91 16 15 S -0.17 -8.81 18.55 -56.49 -1.05 -9.86 16 16 C -0.53 -31.47 10.04 67.95 0.68 -30.78 16 17 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 18 C 0.05 2.75 5.50 84.86 0.47 3.22 16 19 N -0.92 -56.30 13.97 21.65 0.30 -56.00 16 20 Si 0.91 45.47 27.74 68.60 1.90 47.38 16 21 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.24 -11.77 6.74 99.48 0.67 -11.09 16 24 C 0.11 1.50 4.42 31.49 0.14 1.63 16 25 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 26 O -0.57 -7.24 11.50 -148.98 -1.71 -8.96 16 27 C 0.01 0.06 5.66 86.45 0.49 0.55 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.86 5.27 -2.39 -0.01 0.85 16 33 H 0.11 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.08 0.78 7.47 -2.38 -0.02 0.76 16 36 H 0.08 1.07 5.29 -2.39 -0.01 1.05 16 37 H 0.07 1.15 8.08 -2.38 -0.02 1.13 16 38 H 0.04 0.59 7.77 -2.39 -0.02 0.57 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.09 7.91 -2.38 -0.02 1.07 16 41 H 0.42 9.46 7.18 -92.71 -0.67 8.80 16 42 H 0.11 4.02 8.14 -2.40 -0.02 4.01 16 43 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 44 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.41 1.32 9.12 -74.06 -0.68 0.65 16 46 H 0.06 0.71 7.69 -2.38 -0.02 0.69 16 47 H 0.11 0.85 7.85 -2.39 -0.02 0.83 16 Total: -1.00 -74.00 391.69 -2.32 -76.31 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.41 Total: 18.63 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.55 Total: -9.52 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -6.55 Total: -89.55 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.76 Total: -33.39 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Total: -74.00 -2.32 -76.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.461 kcal (2) G-P(sol) polarization free energy of solvation -73.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds