Wall clock time and date at job start Tue Mar 31 2020 15:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46860 * 2 1 4 4 C 1.52992 * 109.47166 * 239.99978 * 2 1 3 5 5 C 1.50698 * 109.46915 * 119.99712 * 2 1 3 6 6 C 1.38225 * 120.02053 * 6.24325 * 5 2 1 7 7 C 1.38209 * 120.09572 * 179.97438 * 6 5 2 8 8 C 1.38300 * 120.13267 * 359.97438 * 7 6 5 9 9 C 1.38295 * 120.02443 * 359.76943 * 8 7 6 10 10 F 1.35095 * 120.04846 * 180.25227 * 9 8 7 11 11 C 1.38619 * 120.01369 * 186.22019 * 5 2 1 12 12 O 1.35962 * 120.06290 * 0.02562 * 11 5 2 13 13 C 1.42894 * 117.00244 * 261.84705 * 12 11 5 14 14 H 1.08994 * 109.47278 * 30.77505 * 13 12 11 15 15 C 1.50703 * 109.46897 * 270.77869 * 13 12 11 16 16 H 1.08007 * 120.00155 * 305.23557 * 15 13 12 17 17 C 1.37874 * 120.00320 * 125.24607 * 15 13 12 18 18 N 1.31511 * 120.00078 * 185.41647 * 17 15 13 19 19 Si 1.86804 * 119.99820 * 5.40969 * 17 15 13 20 20 H 1.48501 * 109.47289 * 265.68031 * 19 17 15 21 21 H 1.48499 * 109.47190 * 25.67857 * 19 17 15 22 22 H 1.48497 * 109.46981 * 145.67880 * 19 17 15 23 23 C 1.50698 * 109.47560 * 150.77715 * 13 12 11 24 24 C 1.38238 * 119.99656 * 35.15242 * 23 13 12 25 25 C 1.38232 * 119.99856 * 179.81207 * 24 23 13 26 26 C 1.38234 * 120.00411 * 0.39800 * 25 24 23 27 27 C 1.38241 * 119.99514 * 359.85533 * 26 25 24 28 28 C 1.38231 * 120.00533 * 215.43164 * 23 13 12 29 29 H 1.09005 * 109.47191 * 299.99772 * 1 2 3 30 30 H 1.08999 * 109.47187 * 60.00404 * 1 2 3 31 31 H 1.09006 * 109.46972 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46979 * 185.72799 * 3 2 1 33 33 H 1.09000 * 109.46963 * 305.73515 * 3 2 1 34 34 H 1.09000 * 109.47098 * 65.73463 * 3 2 1 35 35 H 1.08995 * 109.47409 * 299.99740 * 4 2 1 36 36 H 1.08999 * 109.47282 * 60.00283 * 4 2 1 37 37 H 1.09002 * 109.47270 * 179.97438 * 4 2 1 38 38 H 1.08002 * 119.94747 * 359.95611 * 6 5 2 39 39 H 1.08008 * 119.93653 * 180.02562 * 7 6 5 40 40 H 1.07998 * 119.98935 * 180.02562 * 8 7 6 41 41 H 0.97008 * 120.00096 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.00169 * 0.02562 * 24 23 13 43 43 H 1.08007 * 119.99763 * 180.23437 * 25 24 23 44 44 H 1.07990 * 120.00430 * 179.82835 * 26 25 24 45 45 H 1.07999 * 119.99667 * 179.97438 * 27 26 25 46 46 H 1.07999 * 119.99777 * 359.97380 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.1411 -1.3473 2.0735 7 6 1.6001 -1.9997 3.2022 8 6 2.9523 -2.0180 3.4918 9 6 3.8491 -1.3870 2.6492 10 9 5.1706 -1.4090 2.9289 11 6 3.3884 -0.7257 1.5173 12 8 4.2667 -0.0998 0.6894 13 6 4.9513 -0.9135 -0.2651 14 1 4.3147 -1.7503 -0.5522 15 6 6.2259 -1.4382 0.3443 16 1 6.9448 -0.7519 0.7670 17 6 6.4744 -2.7942 0.3621 18 7 7.5334 -3.2605 0.9871 19 14 5.3067 -3.9691 -0.5014 20 1 4.3113 -4.4833 0.4733 21 1 4.6035 -3.2530 -1.5958 22 1 6.0771 -5.1051 -1.0681 23 6 5.2790 -0.0903 -1.4841 24 6 5.6108 1.2447 -1.3477 25 6 5.9152 1.9989 -2.4654 26 6 5.8798 1.4203 -3.7203 27 6 5.5430 0.0865 -3.8572 28 6 5.2423 -0.6686 -2.7391 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1251 1.4443 -0.1026 33 1 1.5952 1.9851 -0.8342 34 1 1.7629 1.9259 0.9369 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 0.0845 -1.3348 1.8500 39 1 0.9015 -2.4969 3.8589 40 1 3.3085 -2.5289 4.3742 41 1 7.7081 -4.2146 0.9999 42 1 5.6355 1.6976 -0.3675 43 1 6.1780 3.0410 -2.3585 44 1 6.1149 2.0102 -4.5938 45 1 5.5149 -0.3655 -4.8376 46 1 4.9791 -1.7106 -2.8460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233828656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:49 Heat of formation + Delta-G solvation = -31.413031 kcal Electronic energy + Delta-G solvation = -29990.088909 eV Core-core repulsion = 26145.546483 eV Total energy + Delta-G solvation = -3844.542426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -47.78740 -39.99613 -38.58114 -36.62390 -35.81871 -33.02120 -31.43552 -30.29821 -29.54498 -28.99310 -27.29766 -27.07715 -26.77202 -23.32421 -22.65338 -22.08456 -21.50503 -20.22033 -19.09834 -17.56200 -17.02988 -16.43388 -16.03416 -15.87882 -15.05392 -14.88757 -14.60285 -14.39031 -14.27960 -13.87149 -13.77825 -13.69549 -13.24919 -12.92903 -12.78116 -12.57554 -12.51078 -12.14704 -12.06358 -11.90091 -11.65614 -11.47506 -11.44051 -11.28406 -11.16311 -11.07692 -11.02890 -10.60774 -10.49735 -10.34179 -10.23614 -9.85819 -9.43782 -8.88489 -8.77016 -8.30523 -8.25908 -7.92675 -7.83184 -6.31185 -4.30120 1.55864 1.65545 2.00975 2.05103 3.09442 3.13206 3.19772 3.84563 4.17091 4.42081 4.57604 4.73584 4.98628 5.06901 5.12867 5.26587 5.35135 5.46322 5.47577 5.51065 5.59949 5.63808 5.67405 5.80883 5.85609 5.92126 6.04842 6.05933 6.09686 6.12734 6.21436 6.25668 6.30600 6.34822 6.39506 6.51123 6.59661 6.61852 6.66576 6.69324 6.75464 6.79188 6.97650 7.06219 7.12454 7.21244 7.35491 7.42602 7.63947 8.19093 8.48262 8.85446 9.29604 10.80550 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.007627 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.167914 B = 3670.489861 C = 5188.859551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.016 4.016 3 C -0.143 4.143 4 C -0.162 4.162 5 C -0.078 4.078 6 C -0.134 4.134 7 C -0.112 4.112 8 C -0.163 4.163 9 C 0.095 3.905 10 F -0.106 7.106 11 C 0.094 3.906 12 O -0.332 6.332 13 C 0.210 3.790 14 H 0.045 0.955 15 C -0.513 4.513 16 H 0.086 0.914 17 C 0.089 3.911 18 N -0.867 5.867 19 Si 0.849 3.151 20 H -0.270 1.270 21 H -0.257 1.257 22 H -0.278 1.278 23 C -0.029 4.029 24 C -0.103 4.103 25 C -0.123 4.123 26 C -0.144 4.144 27 C -0.121 4.121 28 C -0.128 4.128 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.268 0.732 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 5.151 -2.846 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.016 4.016 3 C -0.200 4.200 4 C -0.219 4.219 5 C -0.078 4.078 6 C -0.152 4.152 7 C -0.130 4.130 8 C -0.182 4.182 9 C 0.075 3.925 10 F -0.084 7.084 11 C 0.048 3.952 12 O -0.250 6.250 13 C 0.157 3.843 14 H 0.062 0.938 15 C -0.549 4.549 16 H 0.104 0.896 17 C -0.117 4.117 18 N -0.503 5.503 19 Si 0.675 3.325 20 H -0.196 1.196 21 H -0.182 1.182 22 H -0.203 1.203 23 C -0.030 4.030 24 C -0.122 4.122 25 C -0.142 4.142 26 C -0.163 4.163 27 C -0.139 4.139 28 C -0.146 4.146 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.243 5.162 -2.806 13.580 hybrid contribution -0.144 -1.193 -0.268 1.231 sum -12.387 3.969 -3.074 13.366 Atomic orbital electron populations 1.21979 0.94840 1.01466 1.01566 1.19289 0.94568 0.95599 0.92119 1.21996 1.04007 0.93536 1.00482 1.22313 1.04344 0.99274 0.95993 1.20021 0.92072 0.98841 0.96893 1.20965 0.99520 0.99516 0.95165 1.20808 0.94469 1.00092 0.97638 1.21084 0.93468 1.02795 1.00839 1.18302 0.79363 0.98983 0.95864 1.91665 1.29888 1.94077 1.92756 1.18489 0.88917 0.96757 0.90988 1.86072 1.55226 1.36080 1.47623 1.19500 0.92618 0.88229 0.83936 0.93784 1.21216 1.03313 0.92858 1.37536 0.89627 1.24990 0.94964 0.97759 0.93983 1.69876 1.26619 1.14153 1.39680 0.87289 0.82023 0.81882 0.81301 1.19550 1.18166 1.20349 1.20011 0.95515 0.93709 0.93744 1.20944 0.98949 0.93801 0.98457 1.21046 1.00869 0.99349 0.92893 1.20896 1.03113 0.95282 0.96969 1.20918 1.00783 0.94357 0.97840 1.20953 1.01874 0.99698 0.92062 0.92501 0.92602 0.92603 0.89521 0.93345 0.93318 0.93382 0.92637 0.89635 0.85443 0.85800 0.85296 0.92168 0.85967 0.86998 0.87188 0.86989 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 7.15 37.16 0.27 -1.42 16 2 C -0.02 -0.24 0.75 -155.66 -0.12 -0.36 16 3 C -0.14 -2.17 8.07 37.16 0.30 -1.87 16 4 C -0.16 -2.65 8.18 37.15 0.30 -2.35 16 5 C -0.08 -1.34 4.76 -104.49 -0.50 -1.84 16 6 C -0.13 -1.99 8.99 -39.60 -0.36 -2.35 16 7 C -0.11 -1.65 10.04 -39.57 -0.40 -2.05 16 8 C -0.16 -2.85 10.02 -39.54 -0.40 -3.24 16 9 C 0.10 2.03 7.19 -39.30 -0.28 1.75 16 10 F -0.11 -2.62 15.30 2.25 0.03 -2.58 16 11 C 0.09 1.95 5.23 -39.18 -0.20 1.74 16 12 O -0.33 -7.27 5.57 -19.62 -0.11 -7.38 16 13 C 0.21 4.83 1.06 -29.03 -0.03 4.80 16 14 H 0.04 1.04 3.03 -51.93 -0.16 0.88 16 15 C -0.51 -13.90 7.27 -34.44 -0.25 -14.15 16 16 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 17 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 18 N -0.87 -25.44 13.96 55.43 0.77 -24.67 16 19 Si 0.85 20.44 27.24 -169.99 -4.63 15.81 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.26 -5.72 4.98 56.52 0.28 -5.44 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.03 -0.61 3.84 -104.63 -0.40 -1.01 16 24 C -0.10 -1.99 8.86 -39.58 -0.35 -2.34 16 25 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 26 C -0.14 -2.25 10.05 -39.58 -0.40 -2.64 16 27 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 28 C -0.13 -2.48 9.19 -39.59 -0.36 -2.84 16 29 H 0.06 0.63 7.80 -51.93 -0.41 0.22 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 32 H 0.09 1.51 5.38 -51.93 -0.28 1.23 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.59 2.03 -51.93 -0.11 1.49 16 38 H 0.13 1.53 5.91 -52.49 -0.31 1.22 16 39 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 40 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.12 2.38 7.63 -52.49 -0.40 1.98 16 43 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 44 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 46 H 0.11 2.23 6.63 -52.49 -0.35 1.88 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -29.45 360.45 -8.86 -38.30 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.29 Total: 7.74 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: -4.07 Total: -32.65 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.77 Total: -24.67 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.11 Total: -7.38 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.03 Total: -2.58 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.63 Total: 15.81 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.45 -8.86 -38.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233828656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.889 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds