Wall clock time and date at job start Tue Mar 31 2020 15:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46860 * 2 1 4 4 C 1.52992 * 109.47166 * 239.99978 * 2 1 3 5 5 C 1.50698 * 109.46915 * 119.99712 * 2 1 3 6 6 C 1.38225 * 120.02053 * 6.24325 * 5 2 1 7 7 C 1.38209 * 120.09572 * 179.97438 * 6 5 2 8 8 C 1.38300 * 120.13267 * 359.97438 * 7 6 5 9 9 C 1.38295 * 120.02443 * 359.76943 * 8 7 6 10 10 F 1.35095 * 120.04846 * 180.25227 * 9 8 7 11 11 C 1.38619 * 120.01369 * 186.22019 * 5 2 1 12 12 O 1.35962 * 120.06290 * 0.02562 * 11 5 2 13 13 C 1.42894 * 117.00244 * 261.84705 * 12 11 5 14 14 H 1.08994 * 109.47278 * 30.77505 * 13 12 11 15 15 C 1.50703 * 109.46897 * 270.77869 * 13 12 11 16 16 H 1.08007 * 120.00155 * 305.23557 * 15 13 12 17 17 C 1.37874 * 120.00320 * 125.24607 * 15 13 12 18 18 N 1.31511 * 120.00078 * 185.41647 * 17 15 13 19 19 Si 1.86804 * 119.99820 * 5.40969 * 17 15 13 20 20 H 1.48501 * 109.47289 * 265.68031 * 19 17 15 21 21 H 1.48499 * 109.47190 * 25.67857 * 19 17 15 22 22 H 1.48497 * 109.46981 * 145.67880 * 19 17 15 23 23 C 1.50698 * 109.47560 * 150.77715 * 13 12 11 24 24 C 1.38238 * 119.99656 * 35.15242 * 23 13 12 25 25 C 1.38232 * 119.99856 * 179.81207 * 24 23 13 26 26 C 1.38234 * 120.00411 * 0.39800 * 25 24 23 27 27 C 1.38241 * 119.99514 * 359.85533 * 26 25 24 28 28 C 1.38231 * 120.00533 * 215.43164 * 23 13 12 29 29 H 1.09005 * 109.47191 * 299.99772 * 1 2 3 30 30 H 1.08999 * 109.47187 * 60.00404 * 1 2 3 31 31 H 1.09006 * 109.46972 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46979 * 185.72799 * 3 2 1 33 33 H 1.09000 * 109.46963 * 305.73515 * 3 2 1 34 34 H 1.09000 * 109.47098 * 65.73463 * 3 2 1 35 35 H 1.08995 * 109.47409 * 299.99740 * 4 2 1 36 36 H 1.08999 * 109.47282 * 60.00283 * 4 2 1 37 37 H 1.09002 * 109.47270 * 179.97438 * 4 2 1 38 38 H 1.08002 * 119.94747 * 359.95611 * 6 5 2 39 39 H 1.08008 * 119.93653 * 180.02562 * 7 6 5 40 40 H 1.07998 * 119.98935 * 180.02562 * 8 7 6 41 41 H 0.97008 * 120.00096 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.00169 * 0.02562 * 24 23 13 43 43 H 1.08007 * 119.99763 * 180.23437 * 25 24 23 44 44 H 1.07990 * 120.00430 * 179.82835 * 26 25 24 45 45 H 1.07999 * 119.99667 * 179.97438 * 27 26 25 46 46 H 1.07999 * 119.99777 * 359.97380 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.1411 -1.3473 2.0735 7 6 1.6001 -1.9997 3.2022 8 6 2.9523 -2.0180 3.4918 9 6 3.8491 -1.3870 2.6492 10 9 5.1706 -1.4090 2.9289 11 6 3.3884 -0.7257 1.5173 12 8 4.2667 -0.0998 0.6894 13 6 4.9513 -0.9135 -0.2651 14 1 4.3147 -1.7503 -0.5522 15 6 6.2259 -1.4382 0.3443 16 1 6.9448 -0.7519 0.7670 17 6 6.4744 -2.7942 0.3621 18 7 7.5334 -3.2605 0.9871 19 14 5.3067 -3.9691 -0.5014 20 1 4.3113 -4.4833 0.4733 21 1 4.6035 -3.2530 -1.5958 22 1 6.0771 -5.1051 -1.0681 23 6 5.2790 -0.0903 -1.4841 24 6 5.6108 1.2447 -1.3477 25 6 5.9152 1.9989 -2.4654 26 6 5.8798 1.4203 -3.7203 27 6 5.5430 0.0865 -3.8572 28 6 5.2423 -0.6686 -2.7391 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1251 1.4443 -0.1026 33 1 1.5952 1.9851 -0.8342 34 1 1.7629 1.9259 0.9369 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 0.0845 -1.3348 1.8500 39 1 0.9015 -2.4969 3.8589 40 1 3.3085 -2.5289 4.3742 41 1 7.7081 -4.2146 0.9999 42 1 5.6355 1.6976 -0.3675 43 1 6.1780 3.0410 -2.3585 44 1 6.1149 2.0102 -4.5938 45 1 5.5149 -0.3655 -4.8376 46 1 4.9791 -1.7106 -2.8460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233828656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:48 Heat of formation + Delta-G solvation = -45.776592 kcal Electronic energy + Delta-G solvation = -29990.711760 eV Core-core repulsion = 26145.546483 eV Total energy + Delta-G solvation = -3845.165277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.52732 -41.41541 -39.97644 -38.14034 -37.04179 -34.98058 -33.07222 -31.68392 -30.88189 -30.36221 -29.04149 -28.14568 -28.02713 -25.02894 -24.03072 -23.49281 -22.88322 -21.75961 -20.38854 -19.42285 -18.69719 -17.87721 -17.54436 -17.32267 -16.69149 -16.49251 -16.02215 -15.93626 -15.68859 -15.17682 -15.09588 -15.01640 -14.90275 -14.70578 -14.24835 -14.04442 -14.01855 -13.50279 -13.39477 -13.28189 -13.00004 -12.94394 -12.82850 -12.66765 -12.53859 -12.50474 -12.41559 -12.02673 -11.84450 -11.75153 -11.60072 -11.49445 -11.10874 -10.85980 -10.46812 -9.69158 -9.62131 -9.45549 -9.30411 -8.43097 -6.46210 0.18055 0.25578 0.61200 0.65854 1.15238 1.16744 1.24080 2.15312 2.44648 2.88576 3.08812 3.15598 3.41488 3.71984 3.91026 4.08647 4.14993 4.18090 4.21620 4.27355 4.28658 4.38092 4.40491 4.44711 4.53584 4.72520 4.79825 4.82935 4.84996 4.90004 4.96235 5.02566 5.07484 5.09969 5.19340 5.22593 5.26954 5.28640 5.31081 5.33821 5.46503 5.50293 5.53877 5.69217 5.72483 5.77601 5.82622 5.95327 6.13210 6.26100 6.55713 6.86605 7.20528 8.73930 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.007627 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.167914 B = 3670.489861 C = 5188.859551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.017 4.017 3 C -0.140 4.140 4 C -0.167 4.167 5 C -0.080 4.080 6 C -0.121 4.121 7 C -0.094 4.094 8 C -0.168 4.168 9 C 0.043 3.957 10 F -0.144 7.144 11 C 0.059 3.941 12 O -0.336 6.336 13 C 0.228 3.772 14 H 0.040 0.960 15 C -0.513 4.513 16 H 0.028 0.972 17 C 0.038 3.962 18 N -0.923 5.923 19 Si 0.902 3.098 20 H -0.270 1.270 21 H -0.230 1.230 22 H -0.271 1.271 23 C -0.055 4.055 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.132 4.132 27 C -0.116 4.116 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.268 0.732 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.153 0.847 45 H 0.147 0.853 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.859 5.639 -5.271 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 C -0.197 4.197 4 C -0.223 4.223 5 C -0.081 4.081 6 C -0.139 4.139 7 C -0.112 4.112 8 C -0.187 4.187 9 C 0.024 3.976 10 F -0.122 7.122 11 C 0.014 3.986 12 O -0.254 6.254 13 C 0.175 3.825 14 H 0.057 0.943 15 C -0.550 4.550 16 H 0.046 0.954 17 C -0.163 4.163 18 N -0.562 5.562 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.154 1.154 22 H -0.196 1.196 23 C -0.055 4.055 24 C -0.140 4.140 25 C -0.138 4.138 26 C -0.150 4.150 27 C -0.134 4.134 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.188 0.812 39 H 0.190 0.810 40 H 0.160 0.840 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.159 0.841 44 H 0.170 0.830 45 H 0.165 0.835 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.638 5.676 -5.238 18.344 hybrid contribution 1.134 -1.167 0.545 1.716 sum -15.504 4.509 -4.693 16.815 Atomic orbital electron populations 1.21953 0.91531 1.02773 1.03069 1.19385 0.97075 0.94725 0.90512 1.21936 1.02198 0.94246 1.01331 1.22324 1.02820 0.99825 0.97367 1.20401 0.90738 0.98736 0.98194 1.21515 1.01136 0.97284 0.93962 1.21375 0.93585 0.98449 0.97754 1.21399 0.94439 1.02188 1.00696 1.18972 0.78549 1.02004 0.98123 1.91559 1.32707 1.94749 1.93212 1.18939 0.90305 0.98339 0.91062 1.86025 1.55817 1.35786 1.47768 1.19171 0.90131 0.88749 0.84482 0.94265 1.21277 1.04077 0.92196 1.37491 0.95391 1.25709 0.96510 0.99358 0.94683 1.70029 1.29244 1.14417 1.42494 0.86427 0.80203 0.79876 0.80976 1.19577 1.15370 1.19642 1.19927 0.97584 0.94428 0.93601 1.20917 1.00357 0.93830 0.98902 1.21376 0.99521 1.00510 0.92385 1.21378 1.00678 0.95160 0.97756 1.21318 0.99075 0.94678 0.98279 1.21050 1.02973 0.99829 0.92421 0.91158 0.91102 0.91314 0.92533 0.91442 0.93141 0.93224 0.90918 0.92207 0.81157 0.81012 0.84020 0.92258 0.87995 0.84110 0.82970 0.83539 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.15 71.98 0.51 -2.09 16 2 C -0.02 -0.48 0.75 -52.93 -0.04 -0.52 16 3 C -0.14 -4.09 8.07 71.98 0.58 -3.51 16 4 C -0.17 -5.12 8.18 71.98 0.59 -4.54 16 5 C -0.08 -2.65 4.76 -19.78 -0.09 -2.75 16 6 C -0.12 -3.14 8.99 22.26 0.20 -2.94 16 7 C -0.09 -2.44 10.04 22.28 0.22 -2.21 16 8 C -0.17 -5.84 10.02 22.30 0.22 -5.62 16 9 C 0.04 1.95 7.19 22.45 0.16 2.11 16 10 F -0.14 -7.85 15.30 44.97 0.69 -7.16 16 11 C 0.06 2.51 5.23 22.53 0.12 2.63 16 12 O -0.34 -15.73 5.57 -93.12 -0.52 -16.25 16 13 C 0.23 11.10 1.06 29.10 0.03 11.13 16 14 H 0.04 1.92 3.03 -2.39 -0.01 1.91 16 15 C -0.51 -30.30 7.27 25.60 0.19 -30.11 16 16 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 17 C 0.04 2.24 5.47 84.65 0.46 2.70 16 18 N -0.92 -58.38 13.96 21.45 0.30 -58.08 16 19 Si 0.90 43.69 27.24 68.60 1.87 45.56 16 20 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.23 -10.03 4.98 99.48 0.50 -9.53 16 22 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 23 C -0.05 -2.38 3.84 -19.87 -0.08 -2.45 16 24 C -0.12 -4.86 8.86 22.27 0.20 -4.66 16 25 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 26 C -0.13 -3.63 10.05 22.27 0.22 -3.41 16 27 C -0.12 -3.50 10.05 22.27 0.22 -3.27 16 28 C -0.14 -5.54 9.19 22.27 0.20 -5.34 16 29 H 0.07 1.17 7.80 -2.38 -0.02 1.15 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.16 7.22 -2.38 -0.02 1.14 16 32 H 0.06 2.02 5.38 -2.39 -0.01 2.00 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 2.20 2.03 -2.39 0.00 2.20 16 38 H 0.17 2.99 5.91 -2.91 -0.02 2.98 16 39 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 42 H 0.10 4.35 7.63 -2.91 -0.02 4.33 16 43 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 44 H 0.15 2.97 8.06 -2.92 -0.02 2.95 16 45 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 46 H 0.11 4.17 6.63 -2.91 -0.02 4.15 16 Total: -1.00 -74.06 360.45 7.27 -66.79 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.78 Total: 27.53 kcal Atomic # 6 Polarization: -62.54 SS G_CDS: 4.15 Total: -58.39 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.30 Total: -58.08 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.52 Total: -16.25 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.69 Total: -7.16 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.87 Total: 45.56 kcal Total: -74.06 7.27 -66.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233828656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.010 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds