Wall clock time and date at job start Tue Mar 31 2020 15:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35538 * 116.99646 * 2 1 4 4 C 1.39135 * 120.48175 * 0.02562 * 3 2 1 5 5 C 1.38291 * 118.64584 * 179.97438 * 4 3 2 6 6 C 1.40145 * 119.57285 * 0.02562 * 5 4 3 7 7 C 1.48134 * 119.52316 * 179.97438 * 6 5 4 8 8 C 1.39688 * 120.57272 * 354.04280 * 7 6 5 9 9 C 1.38484 * 118.36381 * 179.77580 * 8 7 6 10 10 C 1.38250 * 119.42699 * 0.49252 * 9 8 7 11 11 C 1.50693 * 119.43803 * 179.77322 * 10 9 8 12 12 C 1.52997 * 109.47688 * 84.72546 * 11 10 9 13 13 C 1.53003 * 109.47299 * 324.72598 * 11 10 9 14 14 N 1.31947 * 121.12327 * 359.49226 * 10 9 8 15 15 C 1.32177 * 121.78322 * 0.25900 * 14 10 9 16 16 O 1.35566 * 119.77490 * 179.97438 * 15 14 10 17 17 C 1.42899 * 117.00236 * 358.52261 * 16 15 14 18 18 N 1.32210 * 120.94989 * 0.24984 * 6 5 4 19 19 C 1.33594 * 121.45486 * 359.48596 * 18 6 5 20 20 C 1.40981 * 119.83430 * 180.23490 * 19 18 6 21 21 H 1.08007 * 119.99883 * 142.57365 * 20 19 18 22 22 C 1.40010 * 120.00227 * 322.58069 * 20 19 18 23 23 N 1.30782 * 120.00198 * 162.48549 * 22 20 19 24 24 Si 1.86806 * 119.99976 * 342.48579 * 22 20 19 25 25 H 1.48496 * 109.46935 * 95.62455 * 24 22 20 26 26 H 1.48500 * 109.46887 * 215.62538 * 24 22 20 27 27 H 1.48499 * 109.46827 * 335.62537 * 24 22 20 28 28 H 1.08998 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47189 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47396 * 60.00097 * 1 2 3 31 31 H 1.07998 * 120.67426 * 359.95553 * 4 3 2 32 32 H 1.08008 * 120.21026 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.81764 * 0.02709 * 8 7 6 34 34 H 1.07999 * 120.28812 * 180.24093 * 9 8 7 35 35 H 1.08999 * 109.47218 * 204.73113 * 11 10 9 36 36 H 1.08999 * 109.46935 * 59.99589 * 12 11 10 37 37 H 1.08994 * 109.47411 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47254 * 300.00545 * 12 11 10 39 39 H 1.09002 * 109.47382 * 180.02562 * 13 11 10 40 40 H 1.08998 * 109.46996 * 300.00376 * 13 11 10 41 41 H 1.09000 * 109.47038 * 59.99874 * 13 11 10 42 42 H 1.08995 * 109.47381 * 303.96247 * 17 16 15 43 43 H 1.09005 * 109.46934 * 63.95930 * 17 16 15 44 44 H 1.09003 * 109.46906 * 183.95555 * 17 16 15 45 45 H 0.96998 * 120.00148 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2077 0.0000 4 6 1.2962 2.3809 0.0005 5 6 1.9631 3.5923 0.0011 6 6 3.3645 3.6104 0.0005 7 6 4.0777 4.9088 0.0005 8 6 3.3713 6.1075 -0.1238 9 6 4.0837 7.2950 -0.1136 10 6 5.4605 7.2602 0.0077 11 6 6.2363 8.5520 0.0137 12 6 6.2617 9.1252 1.4320 13 6 5.5666 9.5536 -0.9292 14 7 6.1061 6.1153 0.1238 15 6 5.4722 4.9555 0.1246 16 8 6.1765 3.8035 0.2458 17 6 7.5980 3.9184 0.3355 18 7 4.0590 2.4855 -0.0055 19 6 3.4556 1.2936 -0.0010 20 6 4.2298 0.1154 -0.0026 21 1 3.9082 -0.7429 0.5687 22 6 5.4158 0.0581 -0.7445 23 7 6.3007 -0.8712 -0.4923 24 14 5.7342 1.3091 -2.0948 25 1 6.5578 2.4208 -1.5555 26 1 6.4576 0.6552 -3.2148 27 1 4.4401 1.8456 -2.5876 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2168 2.3460 0.0002 32 1 1.4075 4.5186 0.0019 33 1 2.2958 6.1083 -0.2213 34 1 3.5686 8.2399 -0.2036 35 1 7.2567 8.3646 -0.3207 36 1 6.7388 8.4117 2.1038 37 1 6.8233 10.0593 1.4364 38 1 5.2414 9.3127 1.7665 39 1 6.1280 10.4879 -0.9252 40 1 5.5485 9.1453 -1.9396 41 1 4.5462 9.7411 -0.5948 42 1 7.9737 4.4648 -0.5296 43 1 7.8624 4.4549 1.2468 44 1 8.0423 2.9233 0.3578 45 1 7.1222 -0.9112 -1.0066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236444195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:13 Heat of formation + Delta-G solvation = -10.763908 kcal Electronic energy + Delta-G solvation = -28394.339592 eV Core-core repulsion = 24570.612541 eV Total energy + Delta-G solvation = -3823.727051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.45637 -39.11904 -37.74493 -37.00830 -35.15588 -33.62700 -32.36061 -30.98427 -30.59314 -28.66847 -27.33999 -26.82613 -26.65137 -25.55671 -23.87752 -22.67191 -21.38313 -21.05797 -20.10887 -17.72831 -17.36379 -17.04031 -16.77879 -15.87267 -15.53649 -15.47827 -14.97192 -14.79933 -14.57743 -14.34182 -13.84608 -13.59639 -13.41808 -13.14680 -12.91344 -12.89334 -12.64415 -12.48959 -12.34185 -12.14911 -11.79137 -11.55194 -11.40797 -11.31663 -11.14041 -10.97237 -10.81163 -10.80827 -10.68652 -10.49070 -10.28782 -9.92023 -9.45881 -9.32171 -9.13936 -8.47762 -8.12162 -8.01837 -6.93418 -6.77797 -4.44705 1.14006 1.64719 2.46471 2.65746 3.33370 3.47202 3.51964 3.71240 4.05916 4.21304 4.27762 4.33713 4.64855 4.73884 5.04339 5.05120 5.16220 5.21283 5.29803 5.42786 5.47735 5.54896 5.57909 5.66248 5.67688 5.70198 5.73393 5.77010 5.77999 5.85199 5.89262 5.94717 5.97040 6.05202 6.08723 6.14118 6.23939 6.33398 6.46585 6.63860 6.74680 7.13431 7.16716 7.29087 7.55871 7.85008 8.08579 8.24946 8.35779 8.71672 8.79382 9.55962 10.20263 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.004582 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.649652 B = 6109.584744 C = 7592.002118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.299 6.299 3 C 0.004 3.996 4 C -0.151 4.151 5 C -0.246 4.246 6 C 0.160 3.840 7 C -0.097 4.097 8 C -0.036 4.036 9 C -0.217 4.217 10 C 0.165 3.835 11 C -0.045 4.045 12 C -0.139 4.139 13 C -0.145 4.145 14 N -0.546 5.546 15 C 0.347 3.653 16 O -0.244 6.244 17 C 0.038 3.962 18 N -0.491 5.491 19 C 0.248 3.752 20 C -0.419 4.419 21 H 0.100 0.900 22 C 0.107 3.893 23 N -0.807 5.807 24 Si 0.927 3.073 25 H -0.242 1.242 26 H -0.307 1.307 27 H -0.270 1.270 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 15.568 -0.039 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.211 6.211 3 C -0.045 4.045 4 C -0.175 4.175 5 C -0.269 4.269 6 C 0.021 3.979 7 C -0.101 4.101 8 C -0.062 4.062 9 C -0.238 4.238 10 C 0.028 3.972 11 C -0.064 4.064 12 C -0.197 4.197 13 C -0.203 4.203 14 N -0.271 5.271 15 C 0.166 3.834 16 O -0.147 6.147 17 C -0.058 4.058 18 N -0.208 5.208 19 C 0.119 3.881 20 C -0.451 4.451 21 H 0.118 0.882 22 C -0.114 4.114 23 N -0.432 5.432 24 Si 0.755 3.245 25 H -0.166 1.166 26 H -0.236 1.236 27 H -0.194 1.194 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.111 0.889 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.846 14.869 0.056 14.894 hybrid contribution -1.813 0.638 -0.624 2.020 sum -2.658 15.508 -0.567 15.744 Atomic orbital electron populations 1.22840 0.81294 1.02401 1.00048 1.86038 1.18559 1.27222 1.89285 1.20469 0.93699 0.83497 1.06849 1.21003 0.98306 0.92438 1.05782 1.20988 0.93589 0.96679 1.15667 1.19126 0.89581 0.90651 0.98535 1.18798 0.90359 0.93591 1.07305 1.21452 1.00296 0.90350 0.94075 1.21568 0.94586 0.98701 1.08929 1.20761 0.91049 0.92059 0.93371 1.20014 0.99473 0.90234 0.96702 1.21780 1.02103 1.00552 0.95259 1.21908 1.00854 0.98299 0.99226 1.67135 1.41138 0.97834 1.21022 1.20071 0.88797 0.84876 0.89641 1.86876 1.19293 1.23758 1.84732 1.22789 0.79518 1.02652 1.00880 1.68290 1.36776 0.96288 1.19398 1.18159 0.86195 0.91512 0.92200 1.19041 1.03024 0.97379 1.25656 0.88180 1.25945 0.93164 0.94679 0.97604 1.69699 1.06637 1.31287 1.35566 0.85920 0.79943 0.80622 0.77988 1.16628 1.23643 1.19437 0.89450 0.93971 0.93916 0.87019 0.87534 0.84189 0.84892 0.89564 0.92357 0.92160 0.92453 0.92131 0.92380 0.92049 0.93128 0.93185 0.88894 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.83 101.05 0.99 1.47 16 2 O -0.30 -6.68 9.92 -18.31 -0.18 -6.87 16 3 C 0.00 0.09 6.74 -38.05 -0.26 -0.17 16 4 C -0.15 -3.15 9.11 -39.23 -0.36 -3.51 16 5 C -0.25 -5.06 9.47 -38.85 -0.37 -5.43 16 6 C 0.16 3.68 6.73 -82.93 -0.56 3.13 16 7 C -0.10 -1.96 5.90 -104.60 -0.62 -2.58 16 8 C -0.04 -0.57 9.51 -38.95 -0.37 -0.94 16 9 C -0.22 -2.99 9.16 -39.49 -0.36 -3.35 16 10 C 0.16 2.44 5.79 -82.54 -0.48 1.96 16 11 C -0.04 -0.50 3.23 -91.77 -0.30 -0.80 16 12 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 13 C -0.15 -1.27 8.62 37.16 0.32 -0.95 16 14 N -0.55 -9.83 9.09 -9.25 -0.08 -9.91 16 15 C 0.35 7.16 7.50 -16.71 -0.13 7.04 16 16 O -0.24 -5.42 6.61 -18.39 -0.12 -5.54 16 17 C 0.04 0.68 9.66 101.05 0.98 1.65 16 18 N -0.49 -12.69 5.24 -7.58 -0.04 -12.73 16 19 C 0.25 6.63 5.51 -84.86 -0.47 6.17 16 20 C -0.42 -11.87 9.14 -37.88 -0.35 -12.22 16 21 H 0.10 2.97 8.02 -52.48 -0.42 2.55 16 22 C 0.11 2.94 5.48 -17.33 -0.09 2.85 16 23 N -0.81 -22.12 13.93 55.55 0.77 -21.35 16 24 Si 0.93 23.16 25.82 -169.99 -4.39 18.77 16 25 H -0.24 -5.82 4.85 56.52 0.27 -5.54 16 26 H -0.31 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 30 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 31 H 0.11 1.93 6.43 -52.49 -0.34 1.59 16 32 H 0.11 1.80 6.27 -52.48 -0.33 1.47 16 33 H 0.14 1.87 6.32 -52.49 -0.33 1.54 16 34 H 0.13 1.39 6.29 -52.49 -0.33 1.06 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.48 6.47 -51.93 -0.34 0.15 16 42 H 0.05 0.85 8.02 -51.93 -0.42 0.44 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 45 H 0.28 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -31.84 364.98 -6.98 -38.81 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.37 Total: -0.01 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.07 Total: -6.67 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.65 Total: -43.99 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.30 Total: -12.41 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.39 Total: 18.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.84 -6.98 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236444195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.050 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds