Wall clock time and date at job start Tue Mar 31 2020 15:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35538 * 116.99646 * 2 1 4 4 C 1.39135 * 120.48175 * 0.02562 * 3 2 1 5 5 C 1.38291 * 118.64584 * 179.97438 * 4 3 2 6 6 C 1.40145 * 119.57285 * 0.02562 * 5 4 3 7 7 C 1.48134 * 119.52316 * 179.97438 * 6 5 4 8 8 C 1.39688 * 120.57272 * 354.04280 * 7 6 5 9 9 C 1.38484 * 118.36381 * 179.77580 * 8 7 6 10 10 C 1.38250 * 119.42699 * 0.49252 * 9 8 7 11 11 C 1.50693 * 119.43803 * 179.77322 * 10 9 8 12 12 C 1.52997 * 109.47688 * 84.72546 * 11 10 9 13 13 C 1.53003 * 109.47299 * 324.72598 * 11 10 9 14 14 N 1.31947 * 121.12327 * 359.49226 * 10 9 8 15 15 C 1.32177 * 121.78322 * 0.25900 * 14 10 9 16 16 O 1.35566 * 119.77490 * 179.97438 * 15 14 10 17 17 C 1.42899 * 117.00236 * 358.52261 * 16 15 14 18 18 N 1.32210 * 120.94989 * 0.24984 * 6 5 4 19 19 C 1.33594 * 121.45486 * 359.48596 * 18 6 5 20 20 C 1.40981 * 119.83430 * 180.23490 * 19 18 6 21 21 H 1.08007 * 119.99883 * 142.57365 * 20 19 18 22 22 C 1.40010 * 120.00227 * 322.58069 * 20 19 18 23 23 N 1.30782 * 120.00198 * 162.48549 * 22 20 19 24 24 Si 1.86806 * 119.99976 * 342.48579 * 22 20 19 25 25 H 1.48496 * 109.46935 * 95.62455 * 24 22 20 26 26 H 1.48500 * 109.46887 * 215.62538 * 24 22 20 27 27 H 1.48499 * 109.46827 * 335.62537 * 24 22 20 28 28 H 1.08998 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47189 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47396 * 60.00097 * 1 2 3 31 31 H 1.07998 * 120.67426 * 359.95553 * 4 3 2 32 32 H 1.08008 * 120.21026 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.81764 * 0.02709 * 8 7 6 34 34 H 1.07999 * 120.28812 * 180.24093 * 9 8 7 35 35 H 1.08999 * 109.47218 * 204.73113 * 11 10 9 36 36 H 1.08999 * 109.46935 * 59.99589 * 12 11 10 37 37 H 1.08994 * 109.47411 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47254 * 300.00545 * 12 11 10 39 39 H 1.09002 * 109.47382 * 180.02562 * 13 11 10 40 40 H 1.08998 * 109.46996 * 300.00376 * 13 11 10 41 41 H 1.09000 * 109.47038 * 59.99874 * 13 11 10 42 42 H 1.08995 * 109.47381 * 303.96247 * 17 16 15 43 43 H 1.09005 * 109.46934 * 63.95930 * 17 16 15 44 44 H 1.09003 * 109.46906 * 183.95555 * 17 16 15 45 45 H 0.96998 * 120.00148 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2077 0.0000 4 6 1.2962 2.3809 0.0005 5 6 1.9631 3.5923 0.0011 6 6 3.3645 3.6104 0.0005 7 6 4.0777 4.9088 0.0005 8 6 3.3713 6.1075 -0.1238 9 6 4.0837 7.2950 -0.1136 10 6 5.4605 7.2602 0.0077 11 6 6.2363 8.5520 0.0137 12 6 6.2617 9.1252 1.4320 13 6 5.5666 9.5536 -0.9292 14 7 6.1061 6.1153 0.1238 15 6 5.4722 4.9555 0.1246 16 8 6.1765 3.8035 0.2458 17 6 7.5980 3.9184 0.3355 18 7 4.0590 2.4855 -0.0055 19 6 3.4556 1.2936 -0.0010 20 6 4.2298 0.1154 -0.0026 21 1 3.9082 -0.7429 0.5687 22 6 5.4158 0.0581 -0.7445 23 7 6.3007 -0.8712 -0.4923 24 14 5.7342 1.3091 -2.0948 25 1 6.5578 2.4208 -1.5555 26 1 6.4576 0.6552 -3.2148 27 1 4.4401 1.8456 -2.5876 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2168 2.3460 0.0002 32 1 1.4075 4.5186 0.0019 33 1 2.2958 6.1083 -0.2213 34 1 3.5686 8.2399 -0.2036 35 1 7.2567 8.3646 -0.3207 36 1 6.7388 8.4117 2.1038 37 1 6.8233 10.0593 1.4364 38 1 5.2414 9.3127 1.7665 39 1 6.1280 10.4879 -0.9252 40 1 5.5485 9.1453 -1.9396 41 1 4.5462 9.7411 -0.5948 42 1 7.9737 4.4648 -0.5296 43 1 7.8624 4.4549 1.2468 44 1 8.0423 2.9233 0.3578 45 1 7.1222 -0.9112 -1.0066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236444195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:12 Heat of formation + Delta-G solvation = -32.245033 kcal Electronic energy + Delta-G solvation = -28395.271083 eV Core-core repulsion = 24570.612541 eV Total energy + Delta-G solvation = -3824.658543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.80442 -40.80012 -39.09508 -38.66305 -36.28514 -35.45020 -33.81178 -32.74392 -32.03202 -30.15372 -28.34195 -28.21198 -27.88621 -27.19448 -25.17820 -24.10518 -22.99432 -22.54198 -21.33935 -19.58959 -18.82098 -18.61820 -18.22956 -17.43083 -16.96656 -16.94028 -16.56973 -16.36240 -16.00943 -15.32534 -15.14531 -14.97482 -14.83134 -14.57553 -14.54490 -14.32001 -14.20485 -13.69817 -13.59565 -13.50183 -13.05479 -12.87295 -12.75984 -12.65548 -12.58048 -12.28765 -12.23587 -12.14549 -12.05887 -11.89491 -11.76308 -11.67934 -11.14781 -10.78977 -10.59144 -10.23078 -9.80196 -9.61542 -8.80294 -8.57466 -6.47632 -0.24345 0.38686 0.67161 0.98538 1.33457 1.46230 1.50347 2.30883 2.33881 2.56539 2.72770 2.87434 3.12374 3.52353 3.69033 3.77350 3.91968 4.16279 4.20738 4.21651 4.29015 4.33584 4.36948 4.38205 4.40828 4.46760 4.47062 4.61610 4.65374 4.73653 4.75436 4.78389 4.86825 4.96444 5.01555 5.03150 5.11612 5.26999 5.31480 5.39886 5.43211 5.45290 5.49665 5.64528 5.86537 6.20002 6.31218 6.47009 6.77605 6.94729 6.97051 7.73107 8.26235 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.004582 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.649652 B = 6109.584744 C = 7592.002118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C -0.012 4.012 4 C -0.143 4.143 5 C -0.219 4.219 6 C 0.133 3.867 7 C -0.138 4.138 8 C -0.023 4.023 9 C -0.202 4.202 10 C 0.162 3.838 11 C -0.045 4.045 12 C -0.135 4.135 13 C -0.141 4.141 14 N -0.560 5.560 15 C 0.320 3.680 16 O -0.282 6.282 17 C 0.039 3.961 18 N -0.506 5.506 19 C 0.221 3.779 20 C -0.463 4.463 21 H 0.063 0.937 22 C 0.080 3.920 23 N -0.849 5.849 24 Si 0.976 3.024 25 H -0.235 1.235 26 H -0.297 1.297 27 H -0.295 1.295 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.179 0.821 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 20.719 -0.474 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C -0.061 4.061 4 C -0.168 4.168 5 C -0.240 4.240 6 C -0.005 4.005 7 C -0.142 4.142 8 C -0.048 4.048 9 C -0.222 4.222 10 C 0.025 3.975 11 C -0.064 4.064 12 C -0.193 4.193 13 C -0.198 4.198 14 N -0.285 5.285 15 C 0.140 3.860 16 O -0.186 6.186 17 C -0.057 4.057 18 N -0.223 5.223 19 C 0.091 3.909 20 C -0.496 4.496 21 H 0.081 0.919 22 C -0.136 4.136 23 N -0.478 5.478 24 Si 0.803 3.197 25 H -0.158 1.158 26 H -0.226 1.226 27 H -0.222 1.222 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.175 0.825 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.196 0.804 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.683 20.040 -0.375 20.379 hybrid contribution -1.202 -0.581 -0.403 1.394 sum -4.885 19.459 -0.778 20.078 Atomic orbital electron populations 1.23231 0.77875 1.04746 1.01619 1.85998 1.22151 1.27009 1.89294 1.20559 0.93268 0.85313 1.06943 1.21509 1.00476 0.91138 1.03635 1.21629 0.92932 0.98631 1.10844 1.19789 0.91204 0.90967 0.98588 1.18969 0.90521 0.93842 1.10821 1.21842 1.01742 0.89203 0.92049 1.22045 0.94044 0.99814 1.06290 1.21625 0.92430 0.92322 0.91144 1.20163 0.98832 0.89081 0.98357 1.21766 1.02943 1.00941 0.93641 1.21905 1.01820 0.98155 0.97958 1.67187 1.41672 0.98088 1.21524 1.20292 0.89254 0.85189 0.91216 1.86797 1.20706 1.25674 1.85425 1.22837 0.78432 1.02736 1.01680 1.68183 1.38298 0.96947 1.18831 1.18248 0.87897 0.91398 0.93330 1.18861 1.04971 0.97586 1.28225 0.91875 1.26344 0.92970 0.95742 0.98509 1.69716 1.07553 1.33156 1.37346 0.85230 0.78462 0.79412 0.76552 1.15847 1.22571 1.22153 0.87086 0.92143 0.92172 0.82521 0.82565 0.81000 0.80400 0.90498 0.94393 0.89800 0.91437 0.90103 0.93080 0.90409 0.92536 0.92051 0.89233 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.83 113.37 1.11 1.71 16 2 O -0.33 -15.01 9.92 -88.42 -0.88 -15.89 16 3 C -0.01 -0.59 6.74 23.26 0.16 -0.44 16 4 C -0.14 -5.52 9.11 22.50 0.21 -5.31 16 5 C -0.22 -8.18 9.47 22.75 0.22 -7.96 16 6 C 0.13 5.99 6.73 42.18 0.28 6.27 16 7 C -0.14 -5.36 5.90 -19.85 -0.12 -5.48 16 8 C -0.02 -0.62 9.51 22.68 0.22 -0.41 16 9 C -0.20 -4.56 9.16 22.33 0.20 -4.35 16 10 C 0.16 4.30 5.79 42.54 0.25 4.55 16 11 C -0.05 -0.84 3.23 -11.54 -0.04 -0.88 16 12 C -0.14 -2.12 9.18 71.98 0.66 -1.46 16 13 C -0.14 -1.76 8.62 71.98 0.62 -1.14 16 14 N -0.56 -19.58 9.09 -296.16 -2.69 -22.27 16 15 C 0.32 13.19 7.50 85.09 0.64 13.83 16 16 O -0.28 -12.99 6.61 -88.73 -0.59 -13.58 16 17 C 0.04 1.45 9.66 113.37 1.10 2.55 16 18 N -0.51 -26.95 5.24 -177.89 -0.93 -27.89 16 19 C 0.22 12.39 5.51 40.32 0.22 12.61 16 20 C -0.46 -28.41 9.14 23.37 0.21 -28.20 16 21 H 0.06 4.16 8.02 -2.91 -0.02 4.14 16 22 C 0.08 4.74 5.48 85.28 0.47 5.21 16 23 N -0.85 -50.16 13.93 21.84 0.30 -49.85 16 24 Si 0.98 50.73 25.82 68.60 1.77 52.50 16 25 H -0.23 -11.72 4.85 99.48 0.48 -11.24 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 27 H -0.30 -16.32 7.11 99.48 0.71 -15.61 16 28 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.06 1.55 7.69 -2.39 -0.02 1.53 16 30 H 0.06 1.55 7.69 -2.39 -0.02 1.54 16 31 H 0.16 4.56 6.43 -2.91 -0.02 4.55 16 32 H 0.16 4.23 6.27 -2.91 -0.02 4.21 16 33 H 0.17 3.45 6.32 -2.91 -0.02 3.43 16 34 H 0.18 2.41 6.29 -2.91 -0.02 2.39 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.72 6.47 -2.39 -0.02 0.71 16 42 H 0.06 1.98 8.02 -2.39 -0.02 1.96 16 43 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.29 15.49 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -77.99 364.98 4.17 -73.82 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.78 Total: 12.05 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 6.40 Total: -8.89 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -3.32 Total: -100.01 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.46 Total: -29.47 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 1.77 Total: 52.50 kcal Total: -77.99 4.17 -73.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236444195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.571 kcal (2) G-P(sol) polarization free energy of solvation -77.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds