Wall clock time and date at job start Tue Mar 31 2020 16:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34840 * 116.99699 * 2 1 4 4 O 1.21564 * 119.99787 * 359.97438 * 3 2 1 5 5 C 1.47084 * 120.00114 * 180.02562 * 3 2 1 6 6 C 1.39551 * 120.44450 * 354.33590 * 5 3 2 7 7 C 1.37779 * 120.18687 * 180.02562 * 6 5 3 8 8 C 1.39743 * 121.15561 * 359.97438 * 7 6 5 9 9 C 1.48315 * 119.54065 * 180.02562 * 8 7 6 10 10 C 1.40922 * 126.24241 * 179.97438 * 9 8 7 11 11 N 1.30640 * 108.08008 * 180.02562 * 10 9 8 12 12 N 1.40007 * 108.54938 * 0.02562 * 11 10 9 13 13 C 1.46502 * 125.87023 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47408 * 305.02329 * 13 12 11 15 15 C 1.53000 * 109.47596 * 184.99760 * 14 13 12 16 16 C 1.53007 * 109.47029 * 64.99993 * 14 13 12 17 17 C 1.34725 * 108.25745 * 0.26433 * 12 11 10 18 18 C 1.38751 * 120.91395 * 0.30236 * 8 7 6 19 19 C 1.40510 * 119.73207 * 359.44714 * 18 8 7 20 20 C 1.40929 * 120.54772 * 180.26839 * 19 18 8 21 21 H 1.08003 * 119.99839 * 147.75381 * 20 19 18 22 22 C 1.40264 * 119.99999 * 327.75170 * 20 19 18 23 23 N 1.30629 * 120.00083 * 350.25401 * 22 20 19 24 24 Si 1.86797 * 120.00100 * 170.25610 * 22 20 19 25 25 H 1.48498 * 109.47178 * 89.99760 * 24 22 20 26 26 H 1.48495 * 109.47501 * 210.00282 * 24 22 20 27 27 H 1.48503 * 109.46971 * 330.00343 * 24 22 20 28 28 H 1.09003 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47533 * 299.99812 * 1 2 3 30 30 H 1.08995 * 109.47324 * 60.00758 * 1 2 3 31 31 H 1.07999 * 119.90850 * 359.97438 * 6 5 3 32 32 H 1.07993 * 119.42241 * 179.97438 * 7 6 5 33 33 H 1.08005 * 125.96178 * 0.02562 * 10 9 8 34 34 H 1.08999 * 109.47223 * 185.02399 * 13 12 11 35 35 H 1.09000 * 109.47266 * 65.02672 * 13 12 11 36 36 H 1.09004 * 109.47273 * 305.00462 * 14 13 12 37 37 H 1.09000 * 109.46942 * 300.00421 * 15 14 13 38 38 H 1.09005 * 109.46645 * 60.00116 * 15 14 13 39 39 H 1.09001 * 109.47129 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.47288 * 180.02562 * 16 14 13 41 41 H 1.09003 * 109.47110 * 300.00195 * 16 14 13 42 42 H 1.09000 * 109.47106 * 59.99826 * 16 14 13 43 43 H 1.07998 * 126.20165 * 179.74454 * 17 12 11 44 44 H 1.08003 * 120.12990 * 179.72975 * 18 8 7 45 45 H 0.97003 * 119.99937 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2015 0.0000 4 8 1.4019 2.2209 -0.0005 5 6 3.5329 1.2786 -0.0006 6 6 4.3019 0.1200 0.1176 7 6 5.6774 0.1984 0.1170 8 6 6.3314 1.4277 -0.0013 9 6 7.8140 1.4705 0.0016 10 6 8.6143 2.6250 -0.1092 11 7 9.8667 2.2557 -0.0671 12 7 9.9161 0.8633 0.0704 13 6 11.1328 0.0517 0.1555 14 6 12.0224 0.3376 -1.0560 15 6 13.2324 -0.5985 -1.0328 16 6 12.5005 1.7903 -1.0063 17 6 8.6524 0.3975 0.1046 18 6 5.6131 2.6092 -0.1158 19 6 4.2085 2.5727 -0.1248 20 6 3.4618 3.7618 -0.2459 21 1 2.5093 3.7518 -0.7548 22 6 3.9557 4.9582 0.2946 23 7 5.0064 4.9396 1.0705 24 14 3.1110 6.5780 -0.0952 25 1 2.0592 6.8443 0.9187 26 1 4.1107 7.6759 -0.0716 27 1 2.4915 6.5015 -1.4427 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 3.8174 -0.8407 0.2107 32 1 6.2604 -0.7059 0.2096 33 1 8.2551 3.6385 -0.2112 34 1 10.8648 -1.0047 0.1681 35 1 11.6725 0.3005 1.0693 36 1 11.4536 0.1736 -1.9713 37 1 13.8011 -0.4344 -0.1175 38 1 12.8917 -1.6333 -1.0682 39 1 13.8663 -0.3944 -1.8957 40 1 13.1339 1.9941 -1.8696 41 1 11.6385 2.4572 -1.0229 42 1 13.0693 1.9544 -0.0910 43 1 8.3562 -0.6367 0.1998 44 1 6.1316 3.5527 -0.2022 45 1 5.3482 5.7671 1.4440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240888480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:14 Heat of formation + Delta-G solvation = 0.053541 kcal Electronic energy + Delta-G solvation = -27094.232365 eV Core-core repulsion = 23270.974394 eV Total energy + Delta-G solvation = -3823.257971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.82740 -39.16030 -37.20520 -36.36325 -35.17758 -33.85664 -32.03941 -31.09007 -29.73759 -28.48651 -27.23625 -27.12571 -25.81729 -25.43691 -22.63835 -21.62959 -20.70810 -20.44759 -19.63512 -19.15329 -17.43852 -16.67692 -16.50199 -15.73695 -15.38340 -15.34188 -15.14525 -14.93175 -14.12333 -14.06334 -13.54878 -13.45704 -13.20473 -13.01432 -12.66224 -12.57655 -12.47973 -12.32089 -12.23946 -12.15592 -11.63656 -11.58880 -11.40652 -11.15028 -11.12648 -11.02582 -10.91359 -10.83385 -10.61062 -10.32985 -9.95949 -9.91149 -9.61516 -9.39230 -9.01735 -8.85009 -8.62841 -7.45848 -7.00241 -6.78673 -4.50433 1.82826 2.39286 2.76697 2.81675 3.04984 3.10854 3.13159 3.39288 3.79865 3.88581 4.14224 4.44661 4.58395 4.63370 4.82647 5.07765 5.16649 5.26174 5.35675 5.44353 5.55608 5.56450 5.62086 5.70388 5.70571 5.77385 5.85919 5.90018 5.92204 6.07471 6.12289 6.20191 6.28537 6.35388 6.47095 6.52867 6.90771 7.02968 7.08686 7.13277 7.32257 7.37194 7.51703 7.64653 7.89975 7.93162 8.06444 8.17258 8.53494 8.67571 8.77350 9.13662 10.00231 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.003255 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.167776 B = 8600.712739 C =10596.370183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.375 6.375 3 C 0.503 3.497 4 O -0.522 6.522 5 C -0.266 4.266 6 C -0.026 4.026 7 C -0.248 4.248 8 C 0.025 3.975 9 C -0.169 4.169 10 C 0.065 3.935 11 N -0.303 5.303 12 N -0.377 5.377 13 C 0.141 3.859 14 C -0.107 4.107 15 C -0.145 4.145 16 C -0.158 4.158 17 C 0.050 3.950 18 C -0.146 4.146 19 C 0.153 3.847 20 C -0.406 4.406 21 H 0.105 0.895 22 C 0.070 3.930 23 N -0.777 5.777 24 Si 0.919 3.081 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.258 1.258 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.184 0.816 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.170 0.830 44 H 0.125 0.875 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.695 -8.057 -1.936 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.294 6.294 3 C 0.354 3.646 4 O -0.413 6.413 5 C -0.269 4.269 6 C -0.045 4.045 7 C -0.267 4.267 8 C 0.023 3.977 9 C -0.180 4.180 10 C -0.121 4.121 11 N -0.123 5.123 12 N -0.159 5.159 13 C 0.019 3.981 14 C -0.126 4.126 15 C -0.203 4.203 16 C -0.216 4.216 17 C -0.096 4.096 18 C -0.165 4.165 19 C 0.149 3.851 20 C -0.433 4.433 21 H 0.123 0.877 22 C -0.151 4.151 23 N -0.401 5.401 24 Si 0.743 3.257 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.182 1.182 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.201 0.799 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.188 0.812 44 H 0.142 0.858 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.979 -7.310 -1.798 13.312 hybrid contribution -1.392 0.325 0.115 1.435 sum 9.586 -6.984 -1.683 11.980 Atomic orbital electron populations 1.22954 0.78821 1.01921 1.01683 1.86598 1.21354 1.35200 1.86214 1.21328 0.89612 0.80140 0.73480 1.90727 1.66928 1.35292 1.48384 1.19717 0.86625 0.95022 1.25531 1.20678 0.93352 0.96020 0.94402 1.20086 0.93547 0.95395 1.17722 1.17905 0.88118 0.93858 0.97770 1.19246 0.94194 0.91507 1.13045 1.24100 0.89558 1.00079 0.98391 1.76968 1.20517 0.89604 1.25257 1.48335 1.04959 1.05146 1.57442 1.21744 0.83362 0.93475 0.99503 1.21389 0.96147 0.97242 0.97839 1.21796 0.97383 0.98817 1.02289 1.22087 1.02901 0.95887 1.00703 1.22485 0.83988 0.99820 1.03266 1.21254 0.93156 0.96077 1.06050 1.18339 0.91230 0.90062 0.85482 1.20222 1.05156 0.90960 1.26991 0.87704 1.26169 0.94191 1.01638 0.93081 1.69718 1.19053 1.30436 1.20868 0.86115 0.79646 0.79387 0.80575 1.19174 1.20008 1.18152 0.89535 0.92856 0.92862 0.87953 0.89083 0.79888 0.89076 0.90211 0.90790 0.92415 0.92574 0.92128 0.93472 0.88934 0.93178 0.81241 0.85758 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.57 101.05 1.07 1.71 16 2 O -0.37 -7.68 9.84 -40.88 -0.40 -8.08 16 3 C 0.50 12.16 7.86 34.32 0.27 12.43 16 4 O -0.52 -13.66 13.54 -19.31 -0.26 -13.92 16 5 C -0.27 -6.59 6.07 -102.49 -0.62 -7.22 16 6 C -0.03 -0.57 9.60 -39.26 -0.38 -0.95 16 7 C -0.25 -5.16 9.50 -39.19 -0.37 -5.53 16 8 C 0.03 0.56 5.86 -105.00 -0.62 -0.06 16 9 C -0.17 -3.21 6.03 -105.34 -0.64 -3.84 16 10 C 0.06 1.18 11.39 -17.04 -0.19 0.99 16 11 N -0.30 -5.10 9.57 30.82 0.29 -4.80 16 12 N -0.38 -5.51 3.67 -61.09 -0.22 -5.73 16 13 C 0.14 1.46 5.95 -4.04 -0.02 1.44 16 14 C -0.11 -1.04 3.12 -90.62 -0.28 -1.33 16 15 C -0.14 -1.04 9.19 37.16 0.34 -0.70 16 16 C -0.16 -1.75 8.91 37.16 0.33 -1.42 16 17 C 0.05 0.78 10.80 -16.89 -0.18 0.60 16 18 C -0.15 -3.54 8.16 -38.54 -0.31 -3.86 16 19 C 0.15 3.99 5.67 -104.69 -0.59 3.40 16 20 C -0.41 -10.77 7.85 -37.80 -0.30 -11.06 16 21 H 0.11 2.88 5.96 -52.48 -0.31 2.57 16 22 C 0.07 1.70 5.26 -17.30 -0.09 1.61 16 23 N -0.78 -19.02 11.05 55.56 0.61 -18.41 16 24 Si 0.92 18.79 29.57 -169.99 -5.03 13.76 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 2.01 7.63 -52.49 -0.40 1.61 16 32 H 0.09 1.61 6.90 -52.49 -0.36 1.25 16 33 H 0.18 3.24 7.30 -52.48 -0.38 2.85 16 34 H 0.09 0.72 8.07 -51.93 -0.42 0.31 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.27 5.35 -51.93 -0.28 1.00 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.17 2.18 7.22 -52.49 -0.38 1.80 16 44 H 0.12 3.02 5.40 -52.48 -0.28 2.74 16 45 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -29.83 373.87 -8.14 -37.97 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.18 Total: 7.38 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.59 Total: -13.79 kcal Atomic # 7 Polarization: -29.63 SS G_CDS: 0.68 Total: -28.95 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.66 Total: -22.01 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.83 -8.14 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240888480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.023 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds