Wall clock time and date at job start Tue Mar 31 2020 16:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34840 * 116.99699 * 2 1 4 4 O 1.21564 * 119.99787 * 359.97438 * 3 2 1 5 5 C 1.47084 * 120.00114 * 180.02562 * 3 2 1 6 6 C 1.39551 * 120.44450 * 354.33590 * 5 3 2 7 7 C 1.37779 * 120.18687 * 180.02562 * 6 5 3 8 8 C 1.39743 * 121.15561 * 359.97438 * 7 6 5 9 9 C 1.48315 * 119.54065 * 180.02562 * 8 7 6 10 10 C 1.40922 * 126.24241 * 179.97438 * 9 8 7 11 11 N 1.30640 * 108.08008 * 180.02562 * 10 9 8 12 12 N 1.40007 * 108.54938 * 0.02562 * 11 10 9 13 13 C 1.46502 * 125.87023 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47408 * 305.02329 * 13 12 11 15 15 C 1.53000 * 109.47596 * 184.99760 * 14 13 12 16 16 C 1.53007 * 109.47029 * 64.99993 * 14 13 12 17 17 C 1.34725 * 108.25745 * 0.26433 * 12 11 10 18 18 C 1.38751 * 120.91395 * 0.30236 * 8 7 6 19 19 C 1.40510 * 119.73207 * 359.44714 * 18 8 7 20 20 C 1.40929 * 120.54772 * 180.26839 * 19 18 8 21 21 H 1.08003 * 119.99839 * 147.75381 * 20 19 18 22 22 C 1.40264 * 119.99999 * 327.75170 * 20 19 18 23 23 N 1.30629 * 120.00083 * 350.25401 * 22 20 19 24 24 Si 1.86797 * 120.00100 * 170.25610 * 22 20 19 25 25 H 1.48498 * 109.47178 * 89.99760 * 24 22 20 26 26 H 1.48495 * 109.47501 * 210.00282 * 24 22 20 27 27 H 1.48503 * 109.46971 * 330.00343 * 24 22 20 28 28 H 1.09003 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47533 * 299.99812 * 1 2 3 30 30 H 1.08995 * 109.47324 * 60.00758 * 1 2 3 31 31 H 1.07999 * 119.90850 * 359.97438 * 6 5 3 32 32 H 1.07993 * 119.42241 * 179.97438 * 7 6 5 33 33 H 1.08005 * 125.96178 * 0.02562 * 10 9 8 34 34 H 1.08999 * 109.47223 * 185.02399 * 13 12 11 35 35 H 1.09000 * 109.47266 * 65.02672 * 13 12 11 36 36 H 1.09004 * 109.47273 * 305.00462 * 14 13 12 37 37 H 1.09000 * 109.46942 * 300.00421 * 15 14 13 38 38 H 1.09005 * 109.46645 * 60.00116 * 15 14 13 39 39 H 1.09001 * 109.47129 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.47288 * 180.02562 * 16 14 13 41 41 H 1.09003 * 109.47110 * 300.00195 * 16 14 13 42 42 H 1.09000 * 109.47106 * 59.99826 * 16 14 13 43 43 H 1.07998 * 126.20165 * 179.74454 * 17 12 11 44 44 H 1.08003 * 120.12990 * 179.72975 * 18 8 7 45 45 H 0.97003 * 119.99937 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2015 0.0000 4 8 1.4019 2.2209 -0.0005 5 6 3.5329 1.2786 -0.0006 6 6 4.3019 0.1200 0.1176 7 6 5.6774 0.1984 0.1170 8 6 6.3314 1.4277 -0.0013 9 6 7.8140 1.4705 0.0016 10 6 8.6143 2.6250 -0.1092 11 7 9.8667 2.2557 -0.0671 12 7 9.9161 0.8633 0.0704 13 6 11.1328 0.0517 0.1555 14 6 12.0224 0.3376 -1.0560 15 6 13.2324 -0.5985 -1.0328 16 6 12.5005 1.7903 -1.0063 17 6 8.6524 0.3975 0.1046 18 6 5.6131 2.6092 -0.1158 19 6 4.2085 2.5727 -0.1248 20 6 3.4618 3.7618 -0.2459 21 1 2.5093 3.7518 -0.7548 22 6 3.9557 4.9582 0.2946 23 7 5.0064 4.9396 1.0705 24 14 3.1110 6.5780 -0.0952 25 1 2.0592 6.8443 0.9187 26 1 4.1107 7.6759 -0.0716 27 1 2.4915 6.5015 -1.4427 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 3.8174 -0.8407 0.2107 32 1 6.2604 -0.7059 0.2096 33 1 8.2551 3.6385 -0.2112 34 1 10.8648 -1.0047 0.1681 35 1 11.6725 0.3005 1.0693 36 1 11.4536 0.1736 -1.9713 37 1 13.8011 -0.4344 -0.1175 38 1 12.8917 -1.6333 -1.0682 39 1 13.8663 -0.3944 -1.8957 40 1 13.1339 1.9941 -1.8696 41 1 11.6385 2.4572 -1.0229 42 1 13.0693 1.9544 -0.0910 43 1 8.3562 -0.6367 0.1998 44 1 6.1316 3.5527 -0.2022 45 1 5.3482 5.7671 1.4440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240888480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:13 Heat of formation + Delta-G solvation = -14.502363 kcal Electronic energy + Delta-G solvation = -27094.863556 eV Core-core repulsion = 23270.974394 eV Total energy + Delta-G solvation = -3823.889163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.11450 -40.92201 -38.85171 -37.31169 -36.92212 -35.64813 -33.33541 -32.54915 -31.51546 -29.88534 -28.56008 -27.98324 -27.19371 -26.90514 -24.26346 -23.17013 -22.00403 -21.80954 -20.90767 -20.65022 -19.13708 -18.25875 -18.01896 -17.41808 -16.99666 -16.81554 -16.33045 -15.97108 -15.61586 -15.27804 -15.17548 -14.82726 -14.44157 -14.35054 -14.16928 -13.97014 -13.80202 -13.62330 -13.35970 -13.18541 -12.97316 -12.92013 -12.81830 -12.75196 -12.73287 -12.41732 -12.20833 -11.94897 -11.81640 -11.70386 -11.53613 -11.43060 -11.19394 -11.12955 -10.68807 -10.27518 -10.16218 -9.27412 -8.76322 -8.40481 -6.41234 0.16117 1.03221 1.08437 1.35256 1.47542 1.50104 1.67436 1.74909 2.19221 2.19994 2.40862 2.82889 3.53655 3.74775 3.82091 3.97831 4.03562 4.19913 4.36647 4.41116 4.44269 4.45449 4.46475 4.50231 4.63479 4.70022 4.73053 4.79675 4.84786 4.89075 4.91691 5.03197 5.08224 5.13272 5.23095 5.27517 5.33790 5.40480 5.47077 5.58964 5.67872 5.81938 5.91362 6.05566 6.18398 6.22424 6.34984 6.66338 6.79170 6.81826 6.93506 7.32901 8.22777 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.003255 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.167776 B = 8600.712739 C =10596.370183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.501 3.499 4 O -0.554 6.554 5 C -0.297 4.297 6 C -0.026 4.026 7 C -0.240 4.240 8 C 0.037 3.963 9 C -0.212 4.212 10 C 0.049 3.951 11 N -0.310 5.310 12 N -0.365 5.365 13 C 0.128 3.872 14 C -0.103 4.103 15 C -0.138 4.138 16 C -0.159 4.159 17 C 0.078 3.922 18 C -0.177 4.177 19 C 0.128 3.872 20 C -0.448 4.448 21 H 0.082 0.918 22 C 0.036 3.964 23 N -0.802 5.802 24 Si 0.979 3.021 25 H -0.269 1.269 26 H -0.254 1.254 27 H -0.263 1.263 28 H 0.135 0.865 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.172 0.828 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.210 0.790 44 H 0.111 0.889 45 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.624 -11.251 -1.625 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.290 6.290 3 C 0.354 3.646 4 O -0.448 6.448 5 C -0.300 4.300 6 C -0.044 4.044 7 C -0.259 4.259 8 C 0.036 3.964 9 C -0.223 4.223 10 C -0.137 4.137 11 N -0.131 5.131 12 N -0.146 5.146 13 C 0.009 3.991 14 C -0.122 4.122 15 C -0.196 4.196 16 C -0.217 4.217 17 C -0.069 4.069 18 C -0.196 4.196 19 C 0.124 3.876 20 C -0.475 4.475 21 H 0.100 0.900 22 C -0.182 4.182 23 N -0.427 5.427 24 Si 0.800 3.200 25 H -0.194 1.194 26 H -0.178 1.178 27 H -0.187 1.187 28 H 0.153 0.847 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.189 0.811 34 H 0.146 0.854 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.227 0.773 44 H 0.129 0.871 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.948 -10.529 -1.487 16.755 hybrid contribution -1.829 1.051 0.018 2.110 sum 11.119 -9.479 -1.469 14.684 Atomic orbital electron populations 1.23369 0.76047 1.05041 1.01609 1.86545 1.24006 1.32952 1.85537 1.21374 0.89725 0.80689 0.72840 1.90700 1.67612 1.36605 1.49872 1.20073 0.87628 0.95738 1.26565 1.20991 0.93915 0.96083 0.93408 1.20559 0.93473 0.96435 1.15401 1.18209 0.89900 0.93408 0.94924 1.19189 0.93070 0.93077 1.16998 1.24043 0.90280 1.00019 0.99327 1.77017 1.19497 0.91283 1.25296 1.48775 1.06190 1.04581 1.55023 1.22261 0.81933 0.94715 1.00200 1.21351 0.97014 0.96798 0.97015 1.21746 0.96116 0.98888 1.02856 1.22064 1.01837 0.96533 1.01257 1.22957 0.83617 1.00547 0.99792 1.21173 0.92707 0.96880 1.08859 1.18709 0.92303 0.90799 0.85774 1.20185 1.05052 0.92732 1.29566 0.89974 1.26810 0.94819 1.03980 0.92551 1.69743 1.19990 1.31478 1.21463 0.85243 0.78870 0.76141 0.79735 1.19411 1.17801 1.18661 0.84727 0.93084 0.92940 0.85260 0.84745 0.81068 0.85378 0.89096 0.91976 0.91597 0.90933 0.91930 0.92849 0.91857 0.92767 0.77306 0.87121 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 10.57 113.37 1.20 2.19 16 2 O -0.37 -15.03 9.84 -57.53 -0.57 -15.59 16 3 C 0.50 24.93 7.86 70.14 0.55 25.48 16 4 O -0.55 -30.44 13.54 19.63 0.27 -30.18 16 5 C -0.30 -15.14 6.07 -18.48 -0.11 -15.25 16 6 C -0.03 -1.10 9.60 22.48 0.22 -0.88 16 7 C -0.24 -9.43 9.50 22.52 0.21 -9.21 16 8 C 0.04 1.63 5.86 -20.11 -0.12 1.51 16 9 C -0.21 -7.86 6.03 -20.33 -0.12 -7.98 16 10 C 0.05 1.81 11.39 85.53 0.97 2.79 16 11 N -0.31 -10.24 9.57 -56.42 -0.54 -10.78 16 12 N -0.36 -9.60 3.67 -347.20 -1.27 -10.87 16 13 C 0.13 2.13 5.95 86.38 0.51 2.64 16 14 C -0.10 -1.69 3.12 -10.79 -0.03 -1.72 16 15 C -0.14 -1.45 9.19 71.98 0.66 -0.79 16 16 C -0.16 -3.28 8.91 71.98 0.64 -2.64 16 17 C 0.08 2.19 10.80 83.86 0.91 3.09 16 18 C -0.18 -9.00 8.16 22.95 0.19 -8.82 16 19 C 0.13 7.05 5.67 -19.91 -0.11 6.94 16 20 C -0.45 -25.43 7.85 23.42 0.18 -25.25 16 21 H 0.08 4.89 5.96 -2.91 -0.02 4.88 16 22 C 0.04 1.86 5.26 85.36 0.45 2.31 16 23 N -0.80 -41.48 11.05 21.88 0.24 -41.24 16 24 Si 0.98 40.46 29.57 68.60 2.03 42.49 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 28 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.13 4.73 7.63 -2.91 -0.02 4.70 16 32 H 0.13 4.07 6.90 -2.91 -0.02 4.05 16 33 H 0.17 6.57 7.30 -2.91 -0.02 6.55 16 34 H 0.13 1.26 8.07 -2.39 -0.02 1.24 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.71 5.35 -2.39 -0.01 1.70 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.21 4.06 7.22 -2.91 -0.02 4.03 16 44 H 0.11 5.81 5.40 -2.91 -0.02 5.79 16 45 H 0.29 13.64 8.29 -92.71 -0.77 12.87 16 Total: -1.00 -70.52 373.87 7.36 -63.15 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 1.01 Total: 28.62 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 6.20 Total: -25.60 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -1.57 Total: -62.89 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.30 Total: -45.77 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -70.52 7.36 -63.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240888480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.651 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds