Wall clock time and date at job start Tue Mar 31 2020 15:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35843 * 116.99931 * 2 1 4 4 C 1.38529 * 120.10382 * 0.02562 * 3 2 1 5 5 C 1.38411 * 120.03706 * 179.97438 * 4 3 2 6 6 F 1.35100 * 119.87264 * 180.02562 * 5 4 3 7 7 C 1.38628 * 120.24929 * 0.02562 * 5 4 3 8 8 C 1.50704 * 119.89116 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47231 * 119.99721 * 8 7 5 10 10 C 1.52993 * 109.46987 * 240.00273 * 8 7 5 11 11 C 1.37956 * 120.21236 * 359.72168 * 7 5 4 12 12 C 1.39313 * 119.95972 * 0.55199 * 11 7 5 13 13 C 1.48316 * 120.12935 * 179.71964 * 12 11 7 14 14 C 1.39370 * 120.12115 * 129.72509 * 13 12 11 15 15 C 1.38015 * 119.87000 * 179.97438 * 14 13 12 16 16 C 1.38319 * 120.12476 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.87457 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46897 * 89.99922 * 17 16 15 19 19 H 1.08004 * 120.00219 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99784 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00109 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99830 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47400 * 60.00099 * 22 20 18 24 24 H 1.48496 * 109.47023 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46898 * 299.99939 * 22 20 18 26 26 C 1.38329 * 120.25318 * 359.97438 * 16 15 14 27 27 C 1.38007 * 120.12456 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47105 * 299.99965 * 1 2 3 30 30 H 1.09000 * 109.47346 * 59.99412 * 1 2 3 31 31 H 1.08000 * 119.98131 * 359.95739 * 4 3 2 32 32 H 1.09008 * 109.46791 * 359.97438 * 8 7 5 33 33 H 1.09006 * 109.46597 * 60.00170 * 9 8 7 34 34 H 1.09001 * 109.47077 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47136 * 300.00131 * 9 8 7 36 36 H 1.09002 * 109.47676 * 59.99593 * 10 8 7 37 37 H 1.09001 * 109.47086 * 179.97438 * 10 8 7 38 38 H 1.09006 * 109.47141 * 300.00013 * 10 8 7 39 39 H 1.08000 * 120.02012 * 180.28228 * 11 7 5 40 40 H 1.08005 * 120.06764 * 0.02562 * 14 13 12 41 41 H 1.08008 * 119.93418 * 179.72577 * 15 14 13 42 42 H 1.09001 * 109.47092 * 210.00096 * 17 16 15 43 43 H 1.08999 * 109.47024 * 330.00102 * 17 16 15 44 44 H 0.97005 * 120.00106 * 180.02562 * 21 20 18 45 45 H 1.08002 * 119.93712 * 179.97438 * 26 16 15 46 46 H 1.08000 * 120.06444 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2933 2.3735 0.0005 5 6 1.9231 3.6061 0.0011 6 9 1.1861 4.7383 0.0021 7 6 3.3073 3.6830 0.0005 8 6 3.9846 5.0293 0.0017 9 6 4.8586 5.1594 1.2507 10 6 4.8575 5.1621 -1.2478 11 6 4.0666 2.5313 0.0053 12 6 3.4419 1.2861 -0.0010 13 6 4.2546 0.0454 -0.0023 14 6 3.9901 -0.9649 0.9207 15 6 4.7493 -2.1174 0.9145 16 6 5.7713 -2.2707 -0.0049 17 6 6.5971 -3.5313 -0.0061 18 6 5.9614 -4.5473 -0.9198 19 1 5.0508 -4.3043 -1.4471 20 6 6.5425 -5.7870 -1.0825 21 7 7.6516 -6.0828 -0.4407 22 14 5.7549 -7.0461 -2.2155 23 1 5.6874 -6.4980 -3.5939 24 1 6.5679 -8.2888 -2.2157 25 1 4.3829 -7.3528 -1.7371 26 6 6.0383 -1.2712 -0.9232 27 6 5.2856 -0.1144 -0.9263 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2147 2.3186 0.0003 32 1 3.2298 5.8158 0.0025 33 1 5.6134 4.3729 1.2495 34 1 5.3489 6.1329 1.2513 35 1 4.2367 5.0648 2.1409 36 1 4.2348 5.0694 -2.1376 37 1 5.3470 6.1360 -1.2472 38 1 5.6122 4.3756 -1.2490 39 1 5.1447 2.5949 0.0094 40 1 3.1921 -0.8464 1.6387 41 1 4.5481 -2.8991 1.6322 42 1 7.6039 -3.3058 -0.3580 43 1 6.6474 -3.9337 1.0056 44 1 8.0606 -6.9549 -0.5554 45 1 6.8377 -1.3961 -1.6385 46 1 5.4946 0.6651 -1.6440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241786702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:13 Heat of formation + Delta-G solvation = -59.569452 kcal Electronic energy + Delta-G solvation = -27115.986100 eV Core-core repulsion = 23270.222720 eV Total energy + Delta-G solvation = -3845.763380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.09105 -40.47439 -38.45717 -38.05300 -35.12283 -33.59021 -32.11563 -30.33560 -29.92307 -29.39973 -27.51061 -27.34599 -26.54884 -23.73430 -23.40016 -22.16287 -21.76342 -20.46365 -19.71748 -18.61605 -17.23209 -16.45886 -16.24886 -16.09564 -16.07826 -15.51761 -14.96631 -14.76886 -14.51686 -14.40090 -14.16159 -14.09632 -13.87468 -13.52406 -13.09021 -12.76656 -12.67394 -12.59039 -12.47534 -12.31634 -12.14604 -11.81876 -11.51312 -11.49656 -11.28128 -11.19898 -11.00312 -10.88170 -10.80970 -10.68268 -10.49764 -10.19626 -9.57625 -9.45068 -9.02833 -8.41894 -8.35523 -8.25421 -7.47183 -6.03778 -4.07650 0.86856 1.12488 2.09925 2.12957 3.11161 3.32392 3.36269 3.39405 3.43059 4.06126 4.35652 4.38878 4.46229 4.56066 4.69489 4.81399 4.93920 4.96548 4.98092 5.07921 5.17873 5.30494 5.32931 5.42338 5.43974 5.52318 5.56366 5.60894 5.62947 5.70079 5.83813 5.88107 5.91356 6.02202 6.02695 6.07802 6.25008 6.27000 6.30999 6.56803 6.67690 6.73690 7.11020 7.18049 7.20513 7.26020 7.50920 7.74050 7.86453 7.92088 8.32440 8.97526 9.56052 11.05952 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.002796 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.458253 B =10012.779054 C =11046.478418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.295 6.295 3 C 0.160 3.840 4 C -0.244 4.244 5 C 0.128 3.872 6 F -0.139 7.139 7 C -0.145 4.145 8 C -0.052 4.052 9 C -0.144 4.144 10 C -0.144 4.144 11 C -0.043 4.043 12 C -0.060 4.060 13 C -0.082 4.082 14 C -0.088 4.088 15 C -0.127 4.127 16 C -0.025 4.025 17 C 0.046 3.954 18 C -0.511 4.511 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.127 4.127 27 C -0.105 4.105 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.140 0.860 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.262 0.738 45 H 0.119 0.881 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.082 21.712 2.028 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.207 6.207 3 C 0.113 3.887 4 C -0.263 4.263 5 C 0.109 3.891 6 F -0.118 7.118 7 C -0.146 4.146 8 C -0.071 4.071 9 C -0.201 4.201 10 C -0.201 4.201 11 C -0.061 4.061 12 C -0.061 4.061 13 C -0.082 4.082 14 C -0.107 4.107 15 C -0.145 4.145 16 C -0.025 4.025 17 C 0.009 3.991 18 C -0.550 4.550 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.145 4.145 27 C -0.123 4.123 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.158 0.842 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.137 0.863 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.903 21.408 2.055 24.112 hybrid contribution -1.000 -0.500 -0.674 1.306 sum -11.903 20.908 1.381 24.098 Atomic orbital electron populations 1.23131 0.78556 1.04360 1.01150 1.86265 1.21042 1.25632 1.87743 1.18737 0.91314 0.83907 0.94708 1.20998 1.00867 0.91011 1.13433 1.17178 0.88476 0.81362 1.02069 1.91456 1.77048 1.49404 1.93865 1.19674 0.91195 0.96599 1.07154 1.19982 0.97659 0.93137 0.96294 1.21867 0.99532 1.01959 0.96782 1.21866 0.99539 1.01954 0.96788 1.20780 1.00090 0.89131 0.96143 1.18272 0.89275 0.93768 1.04769 1.18214 0.97558 0.93346 0.99056 1.20987 0.98569 0.93159 0.97936 1.21008 0.96386 0.96933 1.00143 1.20770 0.94368 0.95857 0.91484 1.18382 0.94274 0.88295 0.98113 1.21023 1.09811 0.97703 1.26427 0.92490 1.25006 0.94970 0.98297 0.96030 1.69945 1.18856 1.22220 1.42345 0.86597 0.79307 0.80523 0.81270 1.20155 1.21243 1.20168 1.20989 1.00565 0.93391 0.99563 1.21020 0.95418 0.97838 0.98005 0.87849 0.92664 0.92661 0.84331 0.90275 0.92089 0.92291 0.92566 0.92557 0.92284 0.92097 0.84217 0.87069 0.86364 0.95298 0.95301 0.92789 0.86304 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.29 -3.97 8.83 -19.25 -0.17 -4.14 16 3 C 0.16 2.13 6.59 -38.88 -0.26 1.87 16 4 C -0.24 -2.82 9.01 -39.41 -0.35 -3.17 16 5 C 0.13 1.51 7.24 -39.37 -0.29 1.22 16 6 F -0.14 -1.62 16.17 2.25 0.04 -1.58 16 7 C -0.15 -1.61 4.79 -104.58 -0.50 -2.11 16 8 C -0.05 -0.48 3.07 -91.77 -0.28 -0.76 16 9 C -0.14 -1.18 9.00 37.16 0.33 -0.84 16 10 C -0.14 -1.18 9.01 37.15 0.33 -0.84 16 11 C -0.04 -0.52 8.16 -39.29 -0.32 -0.84 16 12 C -0.06 -0.85 5.48 -104.76 -0.57 -1.42 16 13 C -0.08 -1.34 5.27 -104.91 -0.55 -1.90 16 14 C -0.09 -1.54 8.78 -39.24 -0.34 -1.88 16 15 C -0.13 -2.50 9.68 -39.63 -0.38 -2.88 16 16 C -0.02 -0.54 5.07 -104.56 -0.53 -1.07 16 17 C 0.05 1.18 5.10 -29.03 -0.15 1.04 16 18 C -0.51 -14.34 9.09 -34.44 -0.31 -14.66 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C -0.13 -2.47 9.68 -39.63 -0.38 -2.85 16 27 C -0.10 -1.76 9.52 -39.24 -0.37 -2.13 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.14 1.31 6.30 -52.49 -0.33 0.98 16 32 H 0.08 0.73 7.11 -51.92 -0.37 0.36 16 33 H 0.06 0.50 7.36 -51.93 -0.38 0.12 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 39 H 0.14 1.50 7.07 -52.49 -0.37 1.13 16 40 H 0.11 1.75 7.68 -52.48 -0.40 1.35 16 41 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 42 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 43 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 46 H 0.11 1.58 8.05 -52.49 -0.42 1.16 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -30.55 384.30 -9.47 -40.01 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.80 Total: -0.50 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -4.04 Total: -30.48 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.17 Total: -4.14 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.55 -9.47 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241786702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.556 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds