Wall clock time and date at job start Tue Mar 31 2020 15:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35843 * 116.99931 * 2 1 4 4 C 1.38529 * 120.10382 * 0.02562 * 3 2 1 5 5 C 1.38411 * 120.03706 * 179.97438 * 4 3 2 6 6 F 1.35100 * 119.87264 * 180.02562 * 5 4 3 7 7 C 1.38628 * 120.24929 * 0.02562 * 5 4 3 8 8 C 1.50704 * 119.89116 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47231 * 119.99721 * 8 7 5 10 10 C 1.52993 * 109.46987 * 240.00273 * 8 7 5 11 11 C 1.37956 * 120.21236 * 359.72168 * 7 5 4 12 12 C 1.39313 * 119.95972 * 0.55199 * 11 7 5 13 13 C 1.48316 * 120.12935 * 179.71964 * 12 11 7 14 14 C 1.39370 * 120.12115 * 129.72509 * 13 12 11 15 15 C 1.38015 * 119.87000 * 179.97438 * 14 13 12 16 16 C 1.38319 * 120.12476 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.87457 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46897 * 89.99922 * 17 16 15 19 19 H 1.08004 * 120.00219 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99784 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00109 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99830 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47400 * 60.00099 * 22 20 18 24 24 H 1.48496 * 109.47023 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46898 * 299.99939 * 22 20 18 26 26 C 1.38329 * 120.25318 * 359.97438 * 16 15 14 27 27 C 1.38007 * 120.12456 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47105 * 299.99965 * 1 2 3 30 30 H 1.09000 * 109.47346 * 59.99412 * 1 2 3 31 31 H 1.08000 * 119.98131 * 359.95739 * 4 3 2 32 32 H 1.09008 * 109.46791 * 359.97438 * 8 7 5 33 33 H 1.09006 * 109.46597 * 60.00170 * 9 8 7 34 34 H 1.09001 * 109.47077 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47136 * 300.00131 * 9 8 7 36 36 H 1.09002 * 109.47676 * 59.99593 * 10 8 7 37 37 H 1.09001 * 109.47086 * 179.97438 * 10 8 7 38 38 H 1.09006 * 109.47141 * 300.00013 * 10 8 7 39 39 H 1.08000 * 120.02012 * 180.28228 * 11 7 5 40 40 H 1.08005 * 120.06764 * 0.02562 * 14 13 12 41 41 H 1.08008 * 119.93418 * 179.72577 * 15 14 13 42 42 H 1.09001 * 109.47092 * 210.00096 * 17 16 15 43 43 H 1.08999 * 109.47024 * 330.00102 * 17 16 15 44 44 H 0.97005 * 120.00106 * 180.02562 * 21 20 18 45 45 H 1.08002 * 119.93712 * 179.97438 * 26 16 15 46 46 H 1.08000 * 120.06444 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2933 2.3735 0.0005 5 6 1.9231 3.6061 0.0011 6 9 1.1861 4.7383 0.0021 7 6 3.3073 3.6830 0.0005 8 6 3.9846 5.0293 0.0017 9 6 4.8586 5.1594 1.2507 10 6 4.8575 5.1621 -1.2478 11 6 4.0666 2.5313 0.0053 12 6 3.4419 1.2861 -0.0010 13 6 4.2546 0.0454 -0.0023 14 6 3.9901 -0.9649 0.9207 15 6 4.7493 -2.1174 0.9145 16 6 5.7713 -2.2707 -0.0049 17 6 6.5971 -3.5313 -0.0061 18 6 5.9614 -4.5473 -0.9198 19 1 5.0508 -4.3043 -1.4471 20 6 6.5425 -5.7870 -1.0825 21 7 7.6516 -6.0828 -0.4407 22 14 5.7549 -7.0461 -2.2155 23 1 5.6874 -6.4980 -3.5939 24 1 6.5679 -8.2888 -2.2157 25 1 4.3829 -7.3528 -1.7371 26 6 6.0383 -1.2712 -0.9232 27 6 5.2856 -0.1144 -0.9263 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2147 2.3186 0.0003 32 1 3.2298 5.8158 0.0025 33 1 5.6134 4.3729 1.2495 34 1 5.3489 6.1329 1.2513 35 1 4.2367 5.0648 2.1409 36 1 4.2348 5.0694 -2.1376 37 1 5.3470 6.1360 -1.2472 38 1 5.6122 4.3756 -1.2490 39 1 5.1447 2.5949 0.0094 40 1 3.1921 -0.8464 1.6387 41 1 4.5481 -2.8991 1.6322 42 1 7.6039 -3.3058 -0.3580 43 1 6.6474 -3.9337 1.0056 44 1 8.0606 -6.9549 -0.5554 45 1 6.8377 -1.3961 -1.6385 46 1 5.4946 0.6651 -1.6440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241786702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:12 Heat of formation + Delta-G solvation = -72.438738 kcal Electronic energy + Delta-G solvation = -27116.544154 eV Core-core repulsion = 23270.222720 eV Total energy + Delta-G solvation = -3846.321434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.00060 -41.45335 -39.82231 -38.95806 -36.07220 -35.35248 -33.68926 -31.76178 -31.31935 -30.33532 -28.57034 -27.96156 -27.95350 -25.40651 -24.32412 -23.43441 -23.17168 -21.72247 -20.75996 -19.52156 -18.50864 -18.14171 -17.59188 -16.99005 -16.92026 -16.71833 -16.38304 -15.90573 -15.84148 -15.63084 -15.34048 -14.92146 -14.85731 -14.53083 -14.23411 -14.19433 -14.00043 -13.87652 -13.51900 -13.35403 -13.17592 -13.00451 -12.93148 -12.83380 -12.56750 -12.48893 -12.21405 -12.17054 -11.84129 -11.77468 -11.63710 -11.59669 -11.52270 -11.32553 -10.59903 -10.08770 -9.70961 -9.45774 -8.79614 -8.18978 -6.33142 -0.16403 0.22183 0.64540 0.73500 1.39608 1.42296 1.50670 2.27938 2.39098 2.46541 3.04149 3.10707 3.15838 3.56054 3.60998 3.71060 4.02837 4.13286 4.15798 4.23558 4.31014 4.32091 4.36859 4.37258 4.41916 4.58491 4.69301 4.73101 4.74594 4.80607 4.84420 4.85610 5.00945 5.02156 5.09725 5.14388 5.14603 5.20897 5.31732 5.37294 5.40567 5.43329 5.50915 5.60888 5.69669 5.73574 5.77323 6.10677 6.12575 6.26320 6.36051 6.79218 7.35222 8.89272 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.002796 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.458253 B =10012.779054 C =11046.478418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.154 3.846 4 C -0.240 4.240 5 C 0.126 3.874 6 F -0.138 7.138 7 C -0.143 4.143 8 C -0.052 4.052 9 C -0.143 4.143 10 C -0.143 4.143 11 C -0.036 4.036 12 C -0.086 4.086 13 C -0.064 4.064 14 C -0.086 4.086 15 C -0.136 4.136 16 C -0.058 4.058 17 C 0.056 3.944 18 C -0.529 4.529 19 H 0.053 0.947 20 C 0.005 3.995 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.268 1.268 26 C -0.134 4.134 27 C -0.099 4.099 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.160 0.840 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.152 0.848 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.005 0.995 43 H 0.003 0.997 44 H 0.266 0.734 45 H 0.117 0.883 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.920 23.803 1.206 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.234 6.234 3 C 0.108 3.892 4 C -0.259 4.259 5 C 0.107 3.893 6 F -0.116 7.116 7 C -0.144 4.144 8 C -0.070 4.070 9 C -0.200 4.200 10 C -0.201 4.201 11 C -0.054 4.054 12 C -0.087 4.087 13 C -0.064 4.064 14 C -0.104 4.104 15 C -0.154 4.154 16 C -0.058 4.058 17 C 0.019 3.981 18 C -0.567 4.567 19 H 0.071 0.929 20 C -0.193 4.193 21 N -0.570 5.570 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.205 1.205 25 H -0.193 1.193 26 C -0.152 4.152 27 C -0.116 4.116 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.169 0.831 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.075 0.925 45 H 0.135 0.865 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.754 23.512 1.236 26.777 hybrid contribution -0.525 -0.982 -0.378 1.176 sum -13.279 22.530 0.858 26.166 Atomic orbital electron populations 1.23405 0.76452 1.05577 1.02556 1.86222 1.23381 1.26022 1.87810 1.18795 0.91161 0.84467 0.94784 1.21149 1.01909 0.90291 1.12547 1.17353 0.88835 0.81497 1.01637 1.91464 1.77044 1.49329 1.93793 1.19883 0.91119 0.97295 1.06144 1.20039 0.97882 0.91880 0.97209 1.21867 0.99306 1.02844 0.96028 1.21869 0.99336 1.02879 0.95981 1.20861 1.00725 0.88562 0.95264 1.18234 0.89656 0.93255 1.07535 1.18477 0.96711 0.93813 0.97419 1.21119 0.98383 0.92462 0.98472 1.20989 0.96535 0.97996 0.99865 1.20455 0.95782 0.95311 0.94277 1.18112 0.93807 0.90167 0.95980 1.21343 1.09795 0.98750 1.26833 0.92904 1.25916 0.95426 1.00415 0.97551 1.70070 1.20223 1.22915 1.43758 0.85510 0.78553 0.77825 0.79252 1.19257 1.20453 1.19327 1.21021 1.01161 0.93943 0.99122 1.21265 0.94703 0.97321 0.98349 0.86894 0.91027 0.91400 0.82265 0.90223 0.92173 0.90800 0.93064 0.93020 0.90835 0.92032 0.83075 0.85400 0.86972 0.97686 0.97905 0.92533 0.86480 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -8.08 8.83 -91.79 -0.81 -8.90 16 3 C 0.15 3.79 6.59 22.72 0.15 3.94 16 4 C -0.24 -4.90 9.01 22.38 0.20 -4.70 16 5 C 0.13 2.63 7.24 22.40 0.16 2.79 16 6 F -0.14 -2.84 16.17 44.97 0.73 -2.11 16 7 C -0.14 -2.82 4.79 -19.84 -0.09 -2.92 16 8 C -0.05 -0.81 3.07 -11.54 -0.04 -0.84 16 9 C -0.14 -1.98 9.00 71.98 0.65 -1.33 16 10 C -0.14 -1.95 9.01 71.98 0.65 -1.30 16 11 C -0.04 -0.78 8.16 22.46 0.18 -0.60 16 12 C -0.09 -2.25 5.48 -19.95 -0.11 -2.36 16 13 C -0.06 -2.03 5.27 -20.05 -0.11 -2.13 16 14 C -0.09 -2.97 8.78 22.49 0.20 -2.77 16 15 C -0.14 -5.53 9.68 22.24 0.22 -5.31 16 16 C -0.06 -2.64 5.07 -19.82 -0.10 -2.74 16 17 C 0.06 3.07 5.10 29.10 0.15 3.22 16 18 C -0.53 -30.78 9.09 25.60 0.23 -30.55 16 19 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 20 C 0.01 0.30 5.46 84.66 0.46 0.76 16 21 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 22 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C -0.13 -5.31 9.68 22.24 0.22 -5.09 16 27 C -0.10 -3.19 9.52 22.49 0.21 -2.98 16 28 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 0.86 7.66 -2.39 -0.02 0.85 16 30 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 31 H 0.16 2.49 6.30 -2.91 -0.02 2.47 16 32 H 0.08 1.25 7.11 -2.38 -0.02 1.23 16 33 H 0.06 0.84 7.36 -2.38 -0.02 0.83 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.83 7.39 -2.38 -0.02 0.81 16 39 H 0.15 2.84 7.07 -2.91 -0.02 2.82 16 40 H 0.13 3.92 7.68 -2.91 -0.02 3.89 16 41 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 42 H 0.00 0.28 8.08 -2.39 -0.02 0.26 16 43 H 0.00 0.15 8.08 -2.39 -0.02 0.13 16 44 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 45 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 46 H 0.14 3.68 8.05 -2.91 -0.02 3.65 16 Total: -1.00 -67.27 384.30 7.54 -59.72 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.97 Total: 14.36 kcal Atomic # 6 Polarization: -57.92 SS G_CDS: 4.35 Total: -53.58 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.81 Total: -8.90 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.73 Total: -2.11 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.27 7.54 -59.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241786702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.718 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds