Wall clock time and date at job start Tue Mar 31 2020 15:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46618 * 2 1 4 4 C 1.50700 * 109.47044 * 119.99742 * 2 1 3 5 5 C 1.41372 * 126.80688 * 275.28920 * 4 2 1 6 6 C 1.35447 * 103.98943 * 180.09459 * 5 4 2 7 7 C 1.50697 * 126.77821 * 179.90674 * 6 5 4 8 8 N 1.46508 * 109.47078 * 89.71780 * 7 6 5 9 9 C 1.34768 * 120.00099 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00474 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99979 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.46844 * 299.99864 * 11 9 8 13 13 C 1.50697 * 109.47118 * 59.99912 * 11 9 8 14 14 H 1.07995 * 120.00122 * 33.08341 * 13 11 9 15 15 C 1.37876 * 119.99793 * 213.08654 * 13 11 9 16 16 N 1.31515 * 119.99869 * 188.38328 * 15 13 11 17 17 Si 1.86803 * 120.00361 * 8.37939 * 15 13 11 18 18 H 1.48498 * 109.46926 * 275.31598 * 17 15 13 19 19 H 1.48502 * 109.46936 * 35.31380 * 17 15 13 20 20 H 1.48497 * 109.47369 * 155.31295 * 17 15 13 21 21 C 1.50704 * 109.47213 * 180.02562 * 11 9 8 22 22 C 1.38233 * 119.99760 * 293.81750 * 21 11 9 23 23 C 1.38236 * 119.99821 * 179.78368 * 22 21 11 24 24 C 1.38236 * 119.99998 * 0.44870 * 23 22 21 25 25 C 1.38232 * 119.99819 * 359.80888 * 24 23 22 26 26 C 1.38233 * 120.00233 * 359.97438 * 25 24 23 27 27 O 1.34040 * 106.44566 * 359.65205 * 6 5 4 28 28 N 1.20929 * 111.56611 * 0.23753 * 27 6 5 29 29 H 1.09002 * 109.47396 * 299.99647 * 1 2 3 30 30 H 1.09001 * 109.47385 * 59.99853 * 1 2 3 31 31 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46774 * 240.00177 * 2 1 3 33 33 H 1.09002 * 109.46671 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47697 * 299.99915 * 3 2 1 35 35 H 1.09004 * 109.47137 * 60.00593 * 3 2 1 36 36 H 1.08007 * 128.00927 * 0.02562 * 5 4 2 37 37 H 1.09002 * 109.47543 * 329.71622 * 7 6 5 38 38 H 1.08998 * 109.47177 * 209.71349 * 7 6 5 39 39 H 0.96999 * 119.99679 * 359.97438 * 8 7 6 40 40 H 0.97000 * 120.00257 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.00182 * 0.02562 * 22 21 11 42 42 H 1.07996 * 120.00135 * 180.27649 * 23 22 21 43 43 H 1.08001 * 120.00230 * 179.82899 * 24 23 22 44 44 H 1.08000 * 119.99778 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00229 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2163 -0.1509 2.5157 6 6 2.6801 -1.1837 3.2591 7 6 3.0498 -1.1497 4.7196 8 7 1.8720 -1.4722 5.5292 9 6 1.9658 -1.5022 6.8732 10 8 3.0251 -1.2618 7.4128 11 6 0.7542 -1.8334 7.7059 12 1 -0.0303 -1.1017 7.5130 13 6 0.2574 -3.2096 7.3448 14 1 0.9580 -3.9760 7.0481 15 6 -1.0917 -3.4901 7.3932 16 7 -1.5120 -4.7268 7.2401 17 14 -2.3225 -2.1136 7.6762 18 1 -2.4601 -1.8648 9.1337 19 1 -1.8453 -0.8774 7.0058 20 1 -3.6402 -2.5045 7.1141 21 6 1.1238 -1.7995 9.1665 22 6 2.0094 -2.7300 9.6771 23 6 2.3520 -2.6962 11.0159 24 6 1.8018 -1.7375 11.8461 25 6 0.9121 -0.8103 11.3366 26 6 0.5730 -0.8414 9.9968 27 8 2.7400 -2.2436 2.4407 28 7 2.3775 -1.9622 1.3218 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 2.0310 0.8653 2.8315 37 1 3.4084 -0.1540 4.9806 38 1 3.8347 -1.8808 4.9129 39 1 1.0247 -1.6641 5.0977 40 1 -2.4611 -4.9242 7.2737 41 1 2.4367 -3.4811 9.0292 42 1 3.0473 -3.4204 11.4139 43 1 2.0673 -1.7128 12.8927 44 1 0.4826 -0.0611 11.9851 45 1 -0.1218 -0.1167 9.5987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265113795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:47 Heat of formation + Delta-G solvation = 34.818794 kcal Electronic energy + Delta-G solvation = -27323.278543 eV Core-core repulsion = 23501.528106 eV Total energy + Delta-G solvation = -3821.750437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.95621 -39.41261 -37.96498 -36.68682 -34.92042 -33.68930 -32.39642 -31.65523 -31.40363 -30.12415 -28.14341 -27.47273 -26.23472 -24.18330 -23.53109 -22.12539 -21.84313 -21.07713 -19.90409 -19.37573 -17.55030 -17.40145 -17.16987 -16.30180 -16.12904 -15.53989 -15.01942 -14.81978 -14.59360 -14.44964 -14.17312 -13.96004 -13.67329 -13.52873 -13.17878 -12.85594 -12.66836 -12.60975 -12.49918 -12.30617 -12.06684 -11.87809 -11.78012 -11.58097 -11.51367 -11.17008 -11.06325 -10.96855 -10.45261 -10.30840 -10.09545 -9.97170 -9.69155 -9.56113 -8.98812 -8.74853 -8.63730 -8.12786 -7.82487 -6.32988 -4.37157 1.33770 2.13479 2.17024 2.22971 3.00780 3.12410 3.18728 3.23350 3.45599 3.90626 3.95148 4.19218 4.29178 4.63334 4.73522 4.82718 4.92385 4.98424 5.00586 5.19401 5.31683 5.36364 5.50938 5.53851 5.55088 5.59046 5.61528 5.70291 5.72205 5.74399 5.93813 5.94829 5.96104 6.01110 6.03216 6.26444 6.31321 6.44267 6.73501 6.83806 6.87420 7.17186 7.25000 7.26586 7.59237 7.80142 8.06687 8.19976 8.23258 8.67282 8.95781 9.24809 10.78108 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.003305 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.035496 B = 8469.543686 C = 9349.762836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.016 4.016 3 C -0.144 4.144 4 C 0.019 3.981 5 C -0.212 4.212 6 C -0.036 4.036 7 C 0.202 3.798 8 N -0.727 5.727 9 C 0.539 3.461 10 O -0.557 6.557 11 C 0.025 3.975 12 H 0.070 0.930 13 C -0.515 4.515 14 H 0.083 0.917 15 C 0.088 3.912 16 N -0.878 5.878 17 Si 0.864 3.136 18 H -0.266 1.266 19 H -0.264 1.264 20 H -0.284 1.284 21 C -0.028 4.028 22 C -0.071 4.071 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.129 4.129 26 C -0.135 4.135 27 O 0.109 5.891 28 N -0.361 5.361 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.172 0.828 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.409 0.591 40 H 0.269 0.731 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.532 11.707 -8.332 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.201 4.201 4 C -0.140 4.140 5 C -0.234 4.234 6 C -0.100 4.100 7 C 0.078 3.922 8 N -0.382 5.382 9 C 0.329 3.671 10 O -0.435 6.435 11 C 0.003 3.997 12 H 0.087 0.913 13 C -0.553 4.553 14 H 0.101 0.899 15 C -0.118 4.118 16 N -0.513 5.513 17 Si 0.690 3.310 18 H -0.191 1.191 19 H -0.189 1.189 20 H -0.210 1.210 21 C -0.029 4.029 22 C -0.089 4.089 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.154 4.154 27 O 0.042 5.958 28 N -0.063 5.063 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.189 0.811 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.245 0.755 40 H 0.079 0.921 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.166 10.695 -8.831 14.801 hybrid contribution -1.367 1.130 0.317 1.802 sum 3.799 11.825 -8.514 15.059 Atomic orbital electron populations 1.21832 0.93325 1.02626 1.02455 1.19499 0.96199 0.95319 0.92548 1.21833 1.01366 0.94396 1.02541 1.23558 1.02421 0.90655 0.97319 1.22413 1.06752 1.01771 0.92466 1.24513 1.02777 0.86887 0.95830 1.19523 0.90216 1.03220 0.79270 1.45930 1.12457 1.73238 1.06535 1.21218 0.91021 0.73556 0.81345 1.90614 1.30993 1.49713 1.72133 1.18482 0.92583 1.00301 0.88307 0.91259 1.20523 0.93374 0.93682 1.47676 0.89856 1.24972 0.98065 0.95276 0.93467 1.69875 1.15764 1.18127 1.47559 0.87009 0.81185 0.82870 0.79916 1.19081 1.18875 1.21015 1.20035 0.93779 0.92785 0.96266 1.20850 0.96162 0.97577 0.94349 1.21035 1.00589 0.98871 0.94240 1.20866 0.99383 0.96974 0.98860 1.20873 0.99210 0.99388 0.95252 1.20956 1.01331 0.99029 0.94040 1.84877 1.62212 1.34680 1.14078 1.73865 1.15786 1.16872 0.99748 0.92013 0.91663 0.92233 0.89590 0.92304 0.91681 0.91964 0.81092 0.88576 0.89438 0.75542 0.92066 0.86436 0.87109 0.87340 0.87288 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.17 37.16 0.34 -0.93 16 2 C -0.02 -0.15 3.39 -91.77 -0.31 -0.46 16 3 C -0.14 -1.04 8.82 37.16 0.33 -0.71 16 4 C 0.02 0.24 6.21 -82.10 -0.51 -0.27 16 5 C -0.21 -2.45 10.28 -39.39 -0.40 -2.86 16 6 C -0.04 -0.48 6.86 -35.31 -0.24 -0.72 16 7 C 0.20 2.79 6.24 -5.19 -0.03 2.76 16 8 N -0.73 -12.37 5.45 -61.47 -0.33 -12.71 16 9 C 0.54 11.02 7.04 -10.99 -0.08 10.94 16 10 O -0.56 -12.34 15.42 5.56 0.09 -12.25 16 11 C 0.02 0.54 1.98 -94.07 -0.19 0.36 16 12 H 0.07 1.49 4.81 -51.93 -0.25 1.24 16 13 C -0.52 -12.95 8.00 -34.44 -0.28 -13.23 16 14 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 15 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 16 N -0.88 -24.71 13.96 55.43 0.77 -23.94 16 17 Si 0.86 19.47 27.31 -169.99 -4.64 14.83 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.26 -5.48 6.41 56.52 0.36 -5.12 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.03 -0.60 4.30 -104.62 -0.45 -1.05 16 22 C -0.07 -1.53 8.32 -39.58 -0.33 -1.86 16 23 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 24 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 25 C -0.13 -2.30 10.05 -39.59 -0.40 -2.69 16 26 C -0.14 -2.70 9.67 -39.58 -0.38 -3.08 16 27 O 0.11 1.66 11.20 17.17 0.19 1.85 16 28 N -0.36 -5.39 12.07 33.42 0.40 -4.98 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.43 7.50 -51.93 -0.39 0.04 16 36 H 0.17 1.56 7.67 -52.48 -0.40 1.16 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.41 6.90 8.35 -40.82 -0.34 6.56 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.12 2.62 7.89 -52.49 -0.41 2.20 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.96 7.95 -52.49 -0.42 1.54 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -30.20 381.75 -8.05 -38.25 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.46 Total: 10.51 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -3.82 Total: -17.31 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.84 Total: -41.63 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.28 Total: -10.40 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.64 Total: 14.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.20 -8.05 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265113795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.068 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds