Wall clock time and date at job start Tue Mar 31 2020 15:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46618 * 2 1 4 4 C 1.50700 * 109.47044 * 119.99742 * 2 1 3 5 5 C 1.41372 * 126.80688 * 275.28920 * 4 2 1 6 6 C 1.35447 * 103.98943 * 180.09459 * 5 4 2 7 7 C 1.50697 * 126.77821 * 179.90674 * 6 5 4 8 8 N 1.46508 * 109.47078 * 89.71780 * 7 6 5 9 9 C 1.34768 * 120.00099 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00474 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99979 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.46844 * 299.99864 * 11 9 8 13 13 C 1.50697 * 109.47118 * 59.99912 * 11 9 8 14 14 H 1.07995 * 120.00122 * 33.08341 * 13 11 9 15 15 C 1.37876 * 119.99793 * 213.08654 * 13 11 9 16 16 N 1.31515 * 119.99869 * 188.38328 * 15 13 11 17 17 Si 1.86803 * 120.00361 * 8.37939 * 15 13 11 18 18 H 1.48498 * 109.46926 * 275.31598 * 17 15 13 19 19 H 1.48502 * 109.46936 * 35.31380 * 17 15 13 20 20 H 1.48497 * 109.47369 * 155.31295 * 17 15 13 21 21 C 1.50704 * 109.47213 * 180.02562 * 11 9 8 22 22 C 1.38233 * 119.99760 * 293.81750 * 21 11 9 23 23 C 1.38236 * 119.99821 * 179.78368 * 22 21 11 24 24 C 1.38236 * 119.99998 * 0.44870 * 23 22 21 25 25 C 1.38232 * 119.99819 * 359.80888 * 24 23 22 26 26 C 1.38233 * 120.00233 * 359.97438 * 25 24 23 27 27 O 1.34040 * 106.44566 * 359.65205 * 6 5 4 28 28 N 1.20929 * 111.56611 * 0.23753 * 27 6 5 29 29 H 1.09002 * 109.47396 * 299.99647 * 1 2 3 30 30 H 1.09001 * 109.47385 * 59.99853 * 1 2 3 31 31 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46774 * 240.00177 * 2 1 3 33 33 H 1.09002 * 109.46671 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47697 * 299.99915 * 3 2 1 35 35 H 1.09004 * 109.47137 * 60.00593 * 3 2 1 36 36 H 1.08007 * 128.00927 * 0.02562 * 5 4 2 37 37 H 1.09002 * 109.47543 * 329.71622 * 7 6 5 38 38 H 1.08998 * 109.47177 * 209.71349 * 7 6 5 39 39 H 0.96999 * 119.99679 * 359.97438 * 8 7 6 40 40 H 0.97000 * 120.00257 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.00182 * 0.02562 * 22 21 11 42 42 H 1.07996 * 120.00135 * 180.27649 * 23 22 21 43 43 H 1.08001 * 120.00230 * 179.82899 * 24 23 22 44 44 H 1.08000 * 119.99778 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00229 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2163 -0.1509 2.5157 6 6 2.6801 -1.1837 3.2591 7 6 3.0498 -1.1497 4.7196 8 7 1.8720 -1.4722 5.5292 9 6 1.9658 -1.5022 6.8732 10 8 3.0251 -1.2618 7.4128 11 6 0.7542 -1.8334 7.7059 12 1 -0.0303 -1.1017 7.5130 13 6 0.2574 -3.2096 7.3448 14 1 0.9580 -3.9760 7.0481 15 6 -1.0917 -3.4901 7.3932 16 7 -1.5120 -4.7268 7.2401 17 14 -2.3225 -2.1136 7.6762 18 1 -2.4601 -1.8648 9.1337 19 1 -1.8453 -0.8774 7.0058 20 1 -3.6402 -2.5045 7.1141 21 6 1.1238 -1.7995 9.1665 22 6 2.0094 -2.7300 9.6771 23 6 2.3520 -2.6962 11.0159 24 6 1.8018 -1.7375 11.8461 25 6 0.9121 -0.8103 11.3366 26 6 0.5730 -0.8414 9.9968 27 8 2.7400 -2.2436 2.4407 28 7 2.3775 -1.9622 1.3218 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 2.0310 0.8653 2.8315 37 1 3.4084 -0.1540 4.9806 38 1 3.8347 -1.8808 4.9129 39 1 1.0247 -1.6641 5.0977 40 1 -2.4611 -4.9242 7.2737 41 1 2.4367 -3.4811 9.0292 42 1 3.0473 -3.4204 11.4139 43 1 2.0673 -1.7128 12.8927 44 1 0.4826 -0.0611 11.9851 45 1 -0.1218 -0.1167 9.5987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265113795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:47 Heat of formation + Delta-G solvation = 17.508359 kcal Electronic energy + Delta-G solvation = -27324.029180 eV Core-core repulsion = 23501.528106 eV Total energy + Delta-G solvation = -3822.501074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.00024 -40.99480 -39.44785 -37.49599 -36.26979 -35.52204 -33.46719 -33.26764 -32.65823 -31.59784 -29.68217 -28.13917 -27.57130 -25.32599 -25.09112 -23.35412 -23.08663 -22.52310 -21.13874 -20.63392 -19.11705 -18.65763 -18.59306 -17.72463 -17.58459 -16.83888 -16.44700 -16.10412 -15.96295 -15.64655 -15.32005 -15.25408 -14.85801 -14.75450 -14.42510 -14.27704 -14.14193 -14.03704 -13.68581 -13.57375 -13.35646 -13.02803 -12.93687 -12.75528 -12.55881 -12.40711 -12.24868 -12.01875 -11.97587 -11.76226 -11.62067 -11.41576 -11.05121 -10.95827 -10.79800 -10.39417 -10.07619 -9.61499 -9.35409 -8.34670 -6.42822 0.26114 0.67389 0.73743 1.18792 1.33783 1.38746 1.44172 1.81993 1.95150 2.30717 2.54466 2.95904 3.07764 3.18980 3.31671 3.90123 4.01302 4.09200 4.13395 4.16014 4.22955 4.23208 4.31081 4.36553 4.41790 4.50665 4.58725 4.62476 4.64836 4.78277 4.84590 4.89182 4.92605 4.96247 5.01150 5.16453 5.20608 5.30457 5.34559 5.36656 5.39824 5.46510 5.72495 5.76765 5.96243 6.20320 6.32594 6.56753 6.60907 7.19245 7.22383 7.36024 8.80180 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.003305 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.035496 B = 8469.543686 C = 9349.762836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.019 4.019 3 C -0.139 4.139 4 C 0.022 3.978 5 C -0.195 4.195 6 C -0.047 4.047 7 C 0.206 3.794 8 N -0.719 5.719 9 C 0.539 3.461 10 O -0.577 6.577 11 C 0.026 3.974 12 H 0.080 0.920 13 C -0.504 4.504 14 H 0.037 0.963 15 C 0.036 3.964 16 N -0.931 5.931 17 Si 0.921 3.079 18 H -0.263 1.263 19 H -0.231 1.231 20 H -0.286 1.286 21 C -0.056 4.056 22 C -0.104 4.104 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.125 4.125 26 C -0.150 4.150 27 O 0.080 5.920 28 N -0.391 5.391 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.202 0.798 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.410 0.590 40 H 0.269 0.731 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 15.516 -7.503 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.197 4.197 4 C -0.137 4.137 5 C -0.217 4.217 6 C -0.110 4.110 7 C 0.082 3.918 8 N -0.372 5.372 9 C 0.327 3.673 10 O -0.457 6.457 11 C 0.005 3.995 12 H 0.098 0.902 13 C -0.541 4.541 14 H 0.055 0.945 15 C -0.165 4.165 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.187 1.187 19 H -0.155 1.155 20 H -0.212 1.212 21 C -0.057 4.057 22 C -0.122 4.122 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.143 4.143 26 C -0.168 4.168 27 O 0.016 5.984 28 N -0.097 5.097 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.219 0.781 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.245 0.755 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.166 0.834 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.581 14.518 -8.009 17.202 hybrid contribution -1.071 -0.092 0.056 1.077 sum 3.509 14.425 -7.953 16.842 Atomic orbital electron populations 1.21828 0.92742 1.01728 1.03703 1.19695 0.96591 0.96473 0.91035 1.21827 1.01243 0.92706 1.03901 1.24191 1.00815 0.89972 0.98705 1.22786 1.04774 1.02505 0.91596 1.24476 1.03894 0.87217 0.95460 1.19622 0.88629 1.04164 0.79345 1.45868 1.13528 1.71997 1.05814 1.20938 0.90277 0.73761 0.82306 1.90591 1.31320 1.50968 1.72789 1.18418 0.93478 0.98207 0.89425 0.90228 1.20469 0.92616 0.94381 1.46681 0.94484 1.25754 0.99986 0.97455 0.93287 1.70024 1.16115 1.20616 1.50117 0.86088 0.78384 0.81026 0.80119 1.18749 1.15454 1.21215 1.20075 0.95199 0.94290 0.96134 1.20834 0.97709 0.97918 0.95732 1.21346 1.00834 0.99864 0.93216 1.21345 0.98076 0.95534 1.00517 1.21361 0.98362 0.99792 0.94770 1.21251 1.01606 0.98920 0.95038 1.84842 1.63288 1.35741 1.14547 1.73876 1.17396 1.18545 0.99902 0.91854 0.89337 0.94195 0.89758 0.92496 0.89793 0.91186 0.78079 0.86223 0.90198 0.75498 0.92147 0.89314 0.84964 0.83339 0.83396 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.17 71.98 0.66 -1.58 16 2 C -0.02 -0.32 3.39 -11.54 -0.04 -0.36 16 3 C -0.14 -1.60 8.82 71.98 0.63 -0.96 16 4 C 0.02 0.53 6.21 43.58 0.27 0.80 16 5 C -0.20 -4.18 10.28 22.40 0.23 -3.95 16 6 C -0.05 -1.23 6.86 25.04 0.17 -1.06 16 7 C 0.21 5.67 6.24 85.63 0.53 6.20 16 8 N -0.72 -24.73 5.45 -466.78 -2.54 -27.27 16 9 C 0.54 22.37 7.04 87.66 0.62 22.99 16 10 O -0.58 -25.98 15.42 -3.04 -0.05 -26.02 16 11 C 0.03 1.16 1.98 -13.03 -0.03 1.13 16 12 H 0.08 3.31 4.81 -2.39 -0.01 3.30 16 13 C -0.50 -26.49 8.00 25.60 0.20 -26.28 16 14 H 0.04 2.23 8.06 -2.91 -0.02 2.20 16 15 C 0.04 1.91 5.47 84.65 0.46 2.37 16 16 N -0.93 -54.70 13.96 21.45 0.30 -54.40 16 17 Si 0.92 39.68 27.31 68.60 1.87 41.56 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.23 -8.67 6.41 99.48 0.64 -8.03 16 20 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.06 -2.45 4.30 -19.87 -0.09 -2.54 16 22 C -0.10 -4.58 8.32 22.27 0.19 -4.39 16 23 C -0.13 -4.89 10.05 22.27 0.22 -4.67 16 24 C -0.14 -4.27 10.05 22.27 0.22 -4.04 16 25 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 26 C -0.15 -5.64 9.67 22.27 0.22 -5.43 16 27 O 0.08 2.50 11.20 71.62 0.80 3.30 16 28 N -0.39 -11.90 12.07 -49.55 -0.60 -12.49 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.71 7.50 -2.39 -0.02 0.69 16 36 H 0.20 2.96 7.67 -2.91 -0.02 2.94 16 37 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.41 13.98 8.35 -92.71 -0.77 13.21 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.09 4.28 7.89 -2.91 -0.02 4.26 16 42 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 44 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 45 H 0.12 4.13 7.95 -2.91 -0.02 4.11 16 Total: -1.00 -69.38 381.75 4.65 -64.72 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.16 Total: 36.13 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: 4.71 Total: -25.52 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -2.84 Total: -94.17 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.76 Total: -22.72 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.87 Total: 41.56 kcal Total: -69.38 4.65 -64.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265113795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.229 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds