Wall clock time and date at job start Tue Mar 31 2020 15:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47015 * 2 1 4 4 C 1.52999 * 109.47407 * 119.99998 * 2 1 3 5 5 C 1.50706 * 109.46834 * 175.00165 * 4 2 1 6 6 C 1.35459 * 126.06690 * 90.03006 * 5 4 2 7 7 N 1.35547 * 108.87436 * 179.97438 * 6 5 4 8 8 H 0.96997 * 125.67539 * 179.97438 * 7 6 5 9 9 C 1.37651 * 108.64285 * 359.97438 * 7 6 5 10 10 C 1.46648 * 126.23568 * 179.97438 * 9 7 6 11 11 O 1.21710 * 120.00034 * 180.02562 * 10 9 7 12 12 N 1.34778 * 119.99696 * 0.02856 * 10 9 7 13 13 C 1.39900 * 119.99496 * 175.49645 * 12 10 9 14 14 C 1.38936 * 120.00839 * 35.13584 * 13 12 10 15 15 C 1.38000 * 119.99656 * 180.02562 * 14 13 12 16 16 C 1.38906 * 120.00277 * 0.02562 * 15 14 13 17 17 O 1.35779 * 119.99446 * 179.97438 * 16 15 14 18 18 C 1.34811 * 117.00159 * 354.65507 * 17 16 15 19 19 H 1.08004 * 120.00132 * 5.03488 * 18 17 16 20 20 C 1.38627 * 120.00133 * 185.03321 * 18 17 16 21 21 N 1.31570 * 120.00086 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00019 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46557 * 90.00173 * 22 20 18 24 24 H 1.48497 * 109.47312 * 210.00065 * 22 20 18 25 25 H 1.48501 * 109.47168 * 330.00392 * 22 20 18 26 26 C 1.38911 * 120.01187 * 0.23245 * 16 15 14 27 27 C 1.37998 * 119.99964 * 359.48883 * 26 16 15 28 28 C 1.37898 * 107.53320 * 0.24565 * 9 7 6 29 29 H 1.09000 * 109.47207 * 299.99358 * 1 2 3 30 30 H 1.09001 * 109.47524 * 60.00085 * 1 2 3 31 31 H 1.09005 * 109.46476 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47504 * 240.00421 * 2 1 3 33 33 H 1.09001 * 109.46905 * 300.00294 * 3 2 1 34 34 H 1.09001 * 109.46961 * 59.99587 * 3 2 1 35 35 H 1.09000 * 109.47448 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47237 * 55.00646 * 4 2 1 37 37 H 1.08993 * 109.47118 * 294.99856 * 4 2 1 38 38 H 1.08002 * 125.56047 * 359.97438 * 6 5 4 39 39 H 0.96997 * 119.99610 * 355.49217 * 12 10 9 40 40 H 1.08002 * 120.00397 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.99838 * 179.97438 * 15 14 13 42 42 H 0.97008 * 120.00169 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.00346 * 179.74402 * 26 16 15 44 44 H 1.07997 * 120.00308 * 180.23020 * 27 26 16 45 45 H 1.07997 * 126.46044 * 179.72544 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.8293 1.1887 6 6 4.4267 0.0738 1.6751 7 7 5.6843 -0.3706 1.4340 8 1 6.5031 0.0875 1.6799 9 6 5.6060 -1.5804 0.7820 10 6 6.7377 -2.4006 0.3379 11 8 6.5368 -3.4572 -0.2319 12 7 8.0000 -1.9844 0.5607 13 6 9.0784 -2.8090 0.2224 14 6 9.0058 -3.6212 -0.9025 15 6 10.0694 -4.4349 -1.2356 16 6 11.2123 -4.4424 -0.4461 17 8 12.2585 -5.2434 -0.7738 18 6 12.0824 -6.0867 -1.8108 19 1 11.1720 -6.0469 -2.3905 20 6 13.0698 -7.0047 -2.1331 21 7 14.1787 -7.0535 -1.4266 22 14 12.8255 -8.1736 -3.5696 23 1 13.3490 -7.5486 -4.8108 24 1 13.5555 -9.4399 -3.3072 25 1 11.3778 -8.4615 -3.7329 26 6 11.2829 -3.6344 0.6816 27 6 10.2218 -2.8163 1.0119 28 6 4.2696 -1.8777 0.6170 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6765 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6055 -1.7198 1.2951 37 1 1.7517 -0.1583 2.1369 38 1 4.1717 0.9973 2.1736 39 1 8.1608 -1.1131 0.9556 40 1 8.1168 -3.6164 -1.5157 41 1 10.0129 -5.0666 -2.1098 42 1 14.8698 -7.6957 -1.6523 43 1 12.1699 -3.6433 1.2977 44 1 10.2782 -2.1853 1.8866 45 1 3.8618 -2.7554 0.1379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327362084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:59 Heat of formation + Delta-G solvation = -4.439796 kcal Electronic energy + Delta-G solvation = -26134.549350 eV Core-core repulsion = 22311.096533 eV Total energy + Delta-G solvation = -3823.452817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60416 -39.80175 -38.53860 -36.67214 -36.45178 -34.06767 -32.21963 -31.68278 -30.26733 -29.87896 -28.01421 -27.43472 -26.42102 -25.29140 -23.38774 -22.21702 -21.14175 -20.70607 -20.18779 -19.41284 -18.77802 -17.94735 -17.24301 -16.37220 -15.96744 -15.37904 -15.33880 -14.65762 -14.50932 -14.18693 -14.16687 -13.94947 -13.73024 -13.63666 -13.53831 -13.43377 -12.89674 -12.88261 -12.60015 -12.53001 -12.14239 -11.80729 -11.77636 -11.60442 -11.54703 -11.23793 -11.10286 -11.02865 -10.86923 -10.79779 -10.43816 -9.92936 -9.66444 -9.23314 -9.00083 -8.72969 -8.35573 -8.23260 -6.96566 -6.45054 -4.02611 1.29802 2.13533 2.24196 2.51396 2.85995 3.14005 3.15822 3.19818 3.21308 3.42082 3.98025 4.52795 4.59046 4.65345 4.72932 4.79844 4.80829 5.04852 5.08702 5.19236 5.24066 5.34570 5.40893 5.45251 5.56219 5.63374 5.65480 5.68685 5.73833 5.81342 5.90093 5.95356 6.04065 6.08754 6.13045 6.16855 6.30976 6.55130 6.68491 6.72143 6.85247 6.97880 7.06742 7.13973 7.29149 7.42143 7.64127 7.74299 7.99989 8.28189 9.00737 9.69262 10.72675 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025497 B = 0.001975 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.889312 B =14171.103661 C =15004.183835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.041 4.041 5 C -0.172 4.172 6 C 0.022 3.978 7 N -0.541 5.541 8 H 0.415 0.585 9 C -0.046 4.046 10 C 0.579 3.421 11 O -0.514 6.514 12 N -0.660 5.660 13 C 0.031 3.969 14 C -0.062 4.062 15 C -0.220 4.220 16 C 0.147 3.853 17 O -0.176 6.176 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.266 1.266 26 C -0.178 4.178 27 C -0.092 4.092 28 C -0.102 4.102 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.167 0.833 39 H 0.394 0.606 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.270 0.730 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.785 17.655 6.305 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.079 4.079 5 C -0.179 4.179 6 C -0.114 4.114 7 N -0.137 5.137 8 H 0.253 0.747 9 C -0.159 4.159 10 C 0.367 3.633 11 O -0.389 6.389 12 N -0.304 5.304 13 C -0.061 4.061 14 C -0.082 4.082 15 C -0.240 4.240 16 C 0.093 3.907 17 O -0.079 6.079 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.198 4.198 27 C -0.112 4.112 28 C -0.129 4.129 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.185 0.815 39 H 0.228 0.772 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.080 0.920 43 H 0.140 0.860 44 H 0.131 0.869 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.324 16.749 6.022 27.776 hybrid contribution 0.374 0.172 -0.326 0.525 sum -20.950 16.921 5.695 27.526 Atomic orbital electron populations 1.21854 0.95410 1.01705 1.01559 1.21106 0.95060 0.96423 0.98635 1.21869 1.01501 0.95867 1.01181 1.20022 0.89585 1.00768 0.97513 1.19387 0.95383 0.96417 1.06705 1.21794 0.82821 1.00884 1.05863 1.41969 1.08354 1.17552 1.45783 0.74750 1.20458 0.95483 0.90145 1.09846 1.17121 0.81392 0.85116 0.79685 1.90859 1.84342 1.22581 1.41090 1.43037 1.04737 1.19369 1.63231 1.17204 0.88738 1.01616 0.98523 1.20871 0.97930 0.95054 0.94339 1.21117 0.94378 1.04959 1.03539 1.19414 0.87575 0.91091 0.92606 1.83971 1.32167 1.44569 1.47175 1.21350 1.05201 1.13269 1.06856 0.88958 1.25291 0.94852 0.97390 0.98980 1.70046 1.06339 1.35029 1.38292 0.85708 0.78928 0.79042 0.79774 1.19866 1.20243 1.19085 1.19985 1.00080 1.01274 0.98429 1.20346 0.93045 0.99873 0.97971 1.21210 0.90095 0.99775 1.01786 0.92822 0.92855 0.92676 0.91043 0.93178 0.93023 0.92310 0.91191 0.91560 0.81538 0.77234 0.85596 0.85090 0.92016 0.86007 0.86855 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.09 -0.64 2.91 -90.62 -0.26 -0.90 16 3 C -0.15 -0.91 8.91 37.16 0.33 -0.58 16 4 C -0.04 -0.29 5.18 -27.88 -0.14 -0.43 16 5 C -0.17 -1.54 4.82 -105.01 -0.51 -2.04 16 6 C 0.02 0.16 10.43 -16.90 -0.18 -0.02 16 7 N -0.54 -4.25 5.99 -9.39 -0.06 -4.30 16 8 H 0.42 2.01 8.20 -40.82 -0.33 1.68 16 9 C -0.05 -0.55 7.05 -81.98 -0.58 -1.13 16 10 C 0.58 8.80 7.63 -12.87 -0.10 8.70 16 11 O -0.51 -9.92 14.32 5.18 0.07 -9.85 16 12 N -0.66 -9.13 5.33 -11.01 -0.06 -9.19 16 13 C 0.03 0.56 6.30 -83.65 -0.53 0.03 16 14 C -0.06 -1.27 8.69 -39.41 -0.34 -1.61 16 15 C -0.22 -5.01 9.16 -39.42 -0.36 -5.37 16 16 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 17 O -0.18 -5.02 9.75 0.01 0.00 -5.02 16 18 C -0.39 -11.02 9.48 30.88 0.29 -10.73 16 19 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 22 Si 0.94 20.80 29.55 -169.99 -5.02 15.77 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.18 -3.69 9.98 -39.42 -0.39 -4.09 16 27 C -0.09 -1.60 9.96 -39.40 -0.39 -1.99 16 28 C -0.10 -1.19 10.59 -39.11 -0.41 -1.60 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.40 6.42 -51.93 -0.33 0.06 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.39 3.78 7.96 -40.82 -0.32 3.46 16 40 H 0.13 2.56 6.22 -52.49 -0.33 2.24 16 41 H 0.13 3.00 5.63 -52.49 -0.30 2.70 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 44 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 45 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -34.01 377.66 -8.30 -42.31 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.10 Total: 7.12 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -3.59 Total: -17.96 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.64 Total: -38.06 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.07 Total: -14.87 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.01 -8.30 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327362084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.865 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds