Wall clock time and date at job start Tue Mar 31 2020 15:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47015 * 2 1 4 4 C 1.52999 * 109.47407 * 119.99998 * 2 1 3 5 5 C 1.50706 * 109.46834 * 175.00165 * 4 2 1 6 6 C 1.35459 * 126.06690 * 90.03006 * 5 4 2 7 7 N 1.35547 * 108.87436 * 179.97438 * 6 5 4 8 8 H 0.96997 * 125.67539 * 179.97438 * 7 6 5 9 9 C 1.37651 * 108.64285 * 359.97438 * 7 6 5 10 10 C 1.46648 * 126.23568 * 179.97438 * 9 7 6 11 11 O 1.21710 * 120.00034 * 180.02562 * 10 9 7 12 12 N 1.34778 * 119.99696 * 0.02856 * 10 9 7 13 13 C 1.39900 * 119.99496 * 175.49645 * 12 10 9 14 14 C 1.38936 * 120.00839 * 35.13584 * 13 12 10 15 15 C 1.38000 * 119.99656 * 180.02562 * 14 13 12 16 16 C 1.38906 * 120.00277 * 0.02562 * 15 14 13 17 17 O 1.35779 * 119.99446 * 179.97438 * 16 15 14 18 18 C 1.34811 * 117.00159 * 354.65507 * 17 16 15 19 19 H 1.08004 * 120.00132 * 5.03488 * 18 17 16 20 20 C 1.38627 * 120.00133 * 185.03321 * 18 17 16 21 21 N 1.31570 * 120.00086 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00019 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46557 * 90.00173 * 22 20 18 24 24 H 1.48497 * 109.47312 * 210.00065 * 22 20 18 25 25 H 1.48501 * 109.47168 * 330.00392 * 22 20 18 26 26 C 1.38911 * 120.01187 * 0.23245 * 16 15 14 27 27 C 1.37998 * 119.99964 * 359.48883 * 26 16 15 28 28 C 1.37898 * 107.53320 * 0.24565 * 9 7 6 29 29 H 1.09000 * 109.47207 * 299.99358 * 1 2 3 30 30 H 1.09001 * 109.47524 * 60.00085 * 1 2 3 31 31 H 1.09005 * 109.46476 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47504 * 240.00421 * 2 1 3 33 33 H 1.09001 * 109.46905 * 300.00294 * 3 2 1 34 34 H 1.09001 * 109.46961 * 59.99587 * 3 2 1 35 35 H 1.09000 * 109.47448 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47237 * 55.00646 * 4 2 1 37 37 H 1.08993 * 109.47118 * 294.99856 * 4 2 1 38 38 H 1.08002 * 125.56047 * 359.97438 * 6 5 4 39 39 H 0.96997 * 119.99610 * 355.49217 * 12 10 9 40 40 H 1.08002 * 120.00397 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.99838 * 179.97438 * 15 14 13 42 42 H 0.97008 * 120.00169 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.00346 * 179.74402 * 26 16 15 44 44 H 1.07997 * 120.00308 * 180.23020 * 27 26 16 45 45 H 1.07997 * 126.46044 * 179.72544 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.8293 1.1887 6 6 4.4267 0.0738 1.6751 7 7 5.6843 -0.3706 1.4340 8 1 6.5031 0.0875 1.6799 9 6 5.6060 -1.5804 0.7820 10 6 6.7377 -2.4006 0.3379 11 8 6.5368 -3.4572 -0.2319 12 7 8.0000 -1.9844 0.5607 13 6 9.0784 -2.8090 0.2224 14 6 9.0058 -3.6212 -0.9025 15 6 10.0694 -4.4349 -1.2356 16 6 11.2123 -4.4424 -0.4461 17 8 12.2585 -5.2434 -0.7738 18 6 12.0824 -6.0867 -1.8108 19 1 11.1720 -6.0469 -2.3905 20 6 13.0698 -7.0047 -2.1331 21 7 14.1787 -7.0535 -1.4266 22 14 12.8255 -8.1736 -3.5696 23 1 13.3490 -7.5486 -4.8108 24 1 13.5555 -9.4399 -3.3072 25 1 11.3778 -8.4615 -3.7329 26 6 11.2829 -3.6344 0.6816 27 6 10.2218 -2.8163 1.0119 28 6 4.2696 -1.8777 0.6170 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6765 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6055 -1.7198 1.2951 37 1 1.7517 -0.1583 2.1369 38 1 4.1717 0.9973 2.1736 39 1 8.1608 -1.1131 0.9556 40 1 8.1168 -3.6164 -1.5157 41 1 10.0129 -5.0666 -2.1098 42 1 14.8698 -7.6957 -1.6523 43 1 12.1699 -3.6433 1.2977 44 1 10.2782 -2.1853 1.8866 45 1 3.8618 -2.7554 0.1379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327362084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:58 Heat of formation + Delta-G solvation = -26.149969 kcal Electronic energy + Delta-G solvation = -26135.490774 eV Core-core repulsion = 22311.096533 eV Total energy + Delta-G solvation = -3824.394241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.44121 -41.21076 -40.16662 -38.14545 -37.18769 -35.52534 -34.20308 -32.39483 -31.91910 -30.89602 -29.40876 -27.89445 -27.45643 -26.93748 -24.60889 -23.82491 -22.58228 -21.28891 -21.14561 -20.43990 -19.95844 -19.50874 -18.84936 -17.95372 -17.01349 -16.61371 -16.29356 -15.99258 -15.90063 -15.55856 -15.41993 -15.16170 -15.05330 -14.68262 -14.55199 -14.43987 -14.30833 -14.08395 -13.60464 -13.54194 -13.31804 -13.24685 -12.97822 -12.74248 -12.71234 -12.51738 -12.33982 -12.15046 -11.77567 -11.60271 -11.46524 -11.38347 -11.30235 -10.95156 -10.60907 -9.88374 -9.76231 -9.13188 -8.63923 -8.48785 -6.15650 0.23816 0.49599 0.71423 1.33968 1.42291 1.51043 1.75981 1.96206 2.16599 2.22049 2.29548 2.79568 3.12202 3.48222 3.78086 4.04774 4.07732 4.08281 4.13421 4.23792 4.31214 4.39418 4.43928 4.55557 4.59893 4.68975 4.82132 4.90308 4.93132 5.03305 5.07059 5.08860 5.11004 5.17002 5.18971 5.27808 5.30039 5.40117 5.41209 5.53355 5.55984 5.61990 5.66571 5.82827 5.94624 6.00018 6.11044 6.41973 6.61188 6.95705 7.08761 7.73968 8.73590 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025497 B = 0.001975 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.889312 B =14171.103661 C =15004.183835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.038 4.038 5 C -0.186 4.186 6 C 0.055 3.945 7 N -0.523 5.523 8 H 0.433 0.567 9 C -0.073 4.073 10 C 0.580 3.420 11 O -0.564 6.564 12 N -0.646 5.646 13 C 0.059 3.941 14 C -0.076 4.076 15 C -0.229 4.229 16 C 0.109 3.891 17 O -0.225 6.225 18 C -0.415 4.415 19 H 0.097 0.903 20 C -0.019 4.019 21 N -0.916 5.916 22 Si 1.016 2.984 23 H -0.261 1.261 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.179 4.179 27 C -0.074 4.074 28 C -0.116 4.116 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.211 0.789 39 H 0.420 0.580 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.274 0.726 43 H 0.131 0.869 44 H 0.169 0.831 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.169 21.016 8.153 33.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.076 4.076 5 C -0.192 4.192 6 C -0.083 4.083 7 N -0.120 5.120 8 H 0.273 0.727 9 C -0.186 4.186 10 C 0.371 3.629 11 O -0.442 6.442 12 N -0.292 5.292 13 C -0.034 4.034 14 C -0.096 4.096 15 C -0.249 4.249 16 C 0.058 3.942 17 O -0.132 6.132 18 C -0.491 4.491 19 H 0.114 0.886 20 C -0.217 4.217 21 N -0.554 5.554 22 Si 0.835 3.165 23 H -0.186 1.186 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.198 4.198 27 C -0.094 4.094 28 C -0.144 4.144 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.227 0.773 39 H 0.258 0.742 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.083 0.917 43 H 0.149 0.851 44 H 0.186 0.814 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.732 20.203 7.907 32.154 hybrid contribution 0.761 -0.554 -0.719 1.184 sum -22.971 19.649 7.188 31.071 Atomic orbital electron populations 1.21836 0.94682 1.01704 1.02135 1.21081 0.95689 0.96802 0.97646 1.21847 1.01173 0.95218 1.01908 1.20035 0.88402 1.00772 0.98362 1.19604 0.96555 0.96047 1.07005 1.22457 0.81773 1.01035 1.02995 1.41904 1.09630 1.16012 1.44443 0.72684 1.19831 0.93941 0.92003 1.12813 1.17568 0.82156 0.84738 0.78466 1.90841 1.85072 1.24978 1.43349 1.42878 1.03361 1.20003 1.62964 1.17345 0.89675 0.99822 0.96600 1.20938 0.97107 0.95793 0.95769 1.21100 0.94938 1.05566 1.03298 1.19946 0.87681 0.92061 0.94538 1.83934 1.34316 1.46531 1.48373 1.21761 1.05812 1.14049 1.07449 0.88603 1.26518 0.94283 0.98921 1.02019 1.70171 1.07621 1.36720 1.40864 0.84631 0.79223 0.76607 0.76036 1.18591 1.19258 1.18270 1.20337 1.01538 1.00735 0.97207 1.20786 0.91028 0.98810 0.98788 1.21325 0.90837 1.00215 1.02022 0.91662 0.92840 0.93030 0.93243 0.93434 0.91392 0.92695 0.92022 0.89490 0.77258 0.74163 0.85819 0.86523 0.91740 0.85062 0.81377 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 71.98 0.66 -0.76 16 2 C -0.09 -1.09 2.91 -10.79 -0.03 -1.12 16 3 C -0.14 -1.34 8.91 71.98 0.64 -0.70 16 4 C -0.04 -0.44 5.18 29.85 0.15 -0.29 16 5 C -0.19 -2.81 4.82 -20.12 -0.10 -2.91 16 6 C 0.05 0.53 10.43 83.48 0.87 1.40 16 7 N -0.52 -6.00 5.99 -183.61 -1.10 -7.11 16 8 H 0.43 1.92 8.20 -92.71 -0.76 1.16 16 9 C -0.07 -1.59 7.05 40.35 0.28 -1.30 16 10 C 0.58 16.88 7.63 86.44 0.66 17.54 16 11 O -0.56 -22.09 14.32 -4.38 -0.06 -22.15 16 12 N -0.65 -15.99 5.33 -306.96 -1.64 -17.62 16 13 C 0.06 1.99 6.30 38.19 0.24 2.23 16 14 C -0.08 -3.15 8.69 22.38 0.19 -2.95 16 15 C -0.23 -10.93 9.16 22.37 0.20 -10.72 16 16 C 0.11 5.51 6.65 22.59 0.15 5.66 16 17 O -0.23 -13.69 9.75 -22.88 -0.22 -13.91 16 18 C -0.41 -24.81 9.48 67.91 0.64 -24.16 16 19 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 20 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 21 N -0.92 -56.49 13.67 21.61 0.30 -56.19 16 22 Si 1.02 44.17 29.55 68.60 2.03 46.20 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 26 C -0.18 -7.33 9.98 22.37 0.22 -7.11 16 27 C -0.07 -2.36 9.96 22.38 0.22 -2.13 16 28 C -0.12 -2.61 10.59 22.58 0.24 -2.37 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.05 0.55 6.42 -2.39 -0.02 0.53 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.21 0.29 8.06 -2.91 -0.02 0.27 16 39 H 0.42 6.13 7.96 -92.71 -0.74 5.39 16 40 H 0.12 5.19 6.22 -2.91 -0.02 5.17 16 41 H 0.12 5.75 5.63 -2.91 -0.02 5.74 16 42 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 43 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 44 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 45 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -81.54 377.66 4.57 -76.97 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.46 Total: 24.18 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 5.73 Total: -30.36 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.44 Total: -80.92 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.29 Total: -36.06 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -81.54 4.57 -76.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327362084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.818 kcal (2) G-P(sol) polarization free energy of solvation -81.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds