Wall clock time and date at job start Tue Mar 31 2020 16:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 H 1.08997 * 109.47298 * 305.00526 * 4 3 2 6 6 N 1.46503 * 109.46849 * 65.00080 * 4 3 2 7 7 C 1.34780 * 119.99890 * 275.00184 * 6 4 3 8 8 O 1.21344 * 119.99900 * 359.97438 * 7 6 4 9 9 C 1.49456 * 119.99593 * 180.02562 * 7 6 4 10 10 O 1.21344 * 120.00507 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99593 * 179.97438 * 9 7 6 12 12 C 1.46495 * 120.00042 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47460 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47500 * 180.02562 * 13 12 11 15 15 C 1.50690 * 109.47442 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99972 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00051 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00253 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99905 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46839 * 89.99978 * 19 17 15 21 21 H 1.48498 * 109.47261 * 209.99825 * 19 17 15 22 22 H 1.48499 * 109.47254 * 330.00032 * 19 17 15 23 23 C 1.50699 * 109.47132 * 184.99713 * 4 3 2 24 24 C 1.38229 * 120.00268 * 279.73202 * 23 4 3 25 25 C 1.38234 * 120.00148 * 179.79230 * 24 23 4 26 26 C 1.38232 * 119.99604 * 0.43465 * 25 24 23 27 27 C 1.38233 * 120.00500 * 359.81424 * 26 25 24 28 28 C 1.38231 * 119.99496 * 100.00308 * 23 4 3 29 29 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 31 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 32 32 H 0.97004 * 119.99935 * 94.99705 * 6 4 3 33 33 H 0.97004 * 120.00175 * 359.97438 * 11 9 7 34 34 H 1.09002 * 109.46854 * 299.99741 * 12 11 9 35 35 H 1.09006 * 109.47286 * 59.99428 * 12 11 9 36 36 H 1.09002 * 109.46972 * 299.99787 * 13 12 11 37 37 H 1.08992 * 109.47195 * 59.99363 * 13 12 11 38 38 H 1.09002 * 109.46715 * 299.99799 * 14 13 12 39 39 H 1.09006 * 109.47383 * 59.99461 * 14 13 12 40 40 H 0.97004 * 120.00196 * 180.02562 * 18 17 15 41 41 H 1.08005 * 119.99764 * 359.97438 * 24 23 4 42 42 H 1.08002 * 120.00172 * 180.27420 * 25 24 23 43 43 H 1.08005 * 119.99795 * 179.83856 * 26 25 24 44 44 H 1.07999 * 120.00631 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.00444 * 359.97438 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 1 2.7210 0.6389 -2.0562 6 7 2.7673 2.3115 -0.7917 7 6 1.5497 2.7651 -1.1498 8 8 0.7753 2.0320 -1.7288 9 6 1.1540 4.1715 -0.8349 10 8 1.9286 4.9048 -0.2563 11 7 -0.0634 4.6253 -1.1935 12 6 -0.4516 6.0036 -0.8843 13 6 -1.8703 6.2610 -1.3962 14 6 -2.2755 7.7007 -1.0739 15 6 -3.6726 7.9543 -1.5785 16 1 -4.2169 7.1675 -2.0795 17 6 -4.2559 9.1909 -1.4007 18 7 -3.5929 10.1492 -0.7912 19 14 -5.9875 9.5055 -2.0270 20 1 -6.9675 9.1663 -0.9641 21 1 -6.1292 10.9379 -2.3921 22 1 -6.2423 8.6624 -3.2226 23 6 4.6575 0.8405 -1.1822 24 6 5.4427 1.5377 -0.2833 25 6 6.8203 1.4494 -0.3553 26 6 7.4128 0.6709 -1.3319 27 6 6.6277 -0.0223 -2.2341 28 6 5.2500 0.0627 -2.1594 29 1 -1.0502 -0.0001 0.0004 30 1 3.0092 0.3479 0.9672 31 1 3.0098 -1.0104 -0.1831 32 1 3.3866 2.8976 -0.3291 33 1 -0.6825 4.0393 -1.6563 34 1 -0.4209 6.1564 0.1945 35 1 0.2397 6.6933 -1.3687 36 1 -1.9006 6.1083 -2.4750 37 1 -2.5618 5.5715 -0.9122 38 1 -2.2452 7.8538 0.0049 39 1 -1.5838 8.3900 -1.5582 40 1 -4.0035 11.0191 -0.6657 41 1 4.9798 2.1492 0.4772 42 1 7.4338 1.9906 0.3499 43 1 8.4892 0.6039 -1.3897 44 1 7.0906 -0.6302 -2.9973 45 1 4.6365 -0.4789 -2.8643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328616472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:03 Heat of formation + Delta-G solvation = -3.350039 kcal Electronic energy + Delta-G solvation = -26146.290300 eV Core-core repulsion = 22322.884738 eV Total energy + Delta-G solvation = -3823.405562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90551 -39.78620 -38.49145 -36.36928 -35.56071 -33.54665 -33.26389 -31.89062 -31.30612 -31.23783 -29.22741 -27.26762 -25.46108 -24.07117 -23.20372 -22.48522 -21.13440 -20.73609 -20.14096 -18.81046 -18.01702 -17.24078 -16.94728 -16.37359 -16.12627 -15.82246 -15.64760 -15.08621 -14.96136 -14.83767 -14.45508 -14.34047 -14.01427 -13.86189 -13.77728 -13.41377 -13.22671 -12.91120 -12.38492 -12.31305 -11.89245 -11.79378 -11.67228 -11.57711 -11.40975 -10.91662 -10.76523 -10.65245 -10.59868 -10.24599 -9.90459 -9.77653 -9.47317 -9.37527 -9.31065 -9.15203 -9.12485 -8.97054 -8.38296 -6.03002 -4.06000 0.81686 0.95110 1.46217 2.34374 2.79646 2.83766 3.27329 3.30794 3.34286 3.37187 3.40314 3.67794 3.98611 4.40608 4.43468 4.47139 4.52789 4.55228 4.69860 4.82870 4.84536 5.04147 5.10940 5.25033 5.32938 5.43956 5.50718 5.58795 5.59684 5.69179 5.90220 5.95963 6.00640 6.07771 6.08043 6.16283 6.28092 6.51648 6.53930 6.69542 6.92688 6.95001 7.41677 7.61385 7.64979 7.73073 7.75362 7.95333 8.07146 8.36648 9.00479 9.58316 11.08230 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.001937 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.118466 B =14449.938798 C =15193.149991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.201 4.201 3 C -0.013 4.013 4 C 0.193 3.807 5 H 0.105 0.895 6 N -0.701 5.701 7 C 0.510 3.490 8 O -0.505 6.505 9 C 0.500 3.500 10 O -0.528 6.528 11 N -0.691 5.691 12 C 0.114 3.886 13 C -0.122 4.122 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.096 4.096 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.103 4.103 29 H 0.213 0.787 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.412 0.588 33 H 0.411 0.589 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.477 -23.888 0.353 32.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.201 4.201 3 C -0.051 4.051 4 C 0.088 3.912 5 H 0.122 0.878 6 N -0.356 5.356 7 C 0.291 3.709 8 O -0.379 6.379 9 C 0.280 3.720 10 O -0.405 6.405 11 N -0.343 5.343 12 C -0.008 4.008 13 C -0.160 4.160 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.097 4.097 24 C -0.128 4.128 25 C -0.133 4.133 26 C -0.134 4.134 27 C -0.135 4.135 28 C -0.122 4.122 29 H 0.230 0.770 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.249 0.751 33 H 0.247 0.753 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 21.431 -23.676 0.393 31.937 hybrid contribution -1.118 0.337 -0.277 1.200 sum 20.313 -23.339 0.116 30.941 Atomic orbital electron populations 1.24777 0.95831 0.99434 0.99279 1.22542 0.94024 1.01721 1.01806 1.19057 0.85953 1.00496 0.99590 1.19831 0.90244 0.81300 0.99796 0.87754 1.45836 1.16457 1.13474 1.59867 1.20283 0.82527 0.88298 0.79833 1.90781 1.50485 1.57400 1.39239 1.20030 0.83409 0.87656 0.80891 1.90750 1.51171 1.57725 1.40832 1.46053 1.15187 1.15620 1.57400 1.21837 0.98247 0.79512 1.01224 1.21921 0.91849 1.01952 1.00305 1.19031 0.96440 0.88545 0.97316 1.21197 0.99859 0.97355 1.37676 0.92573 1.25030 0.97926 0.96240 0.95282 1.69962 1.37335 1.03508 1.42471 0.86572 0.84704 0.77396 0.79191 1.20653 1.21206 1.19870 1.19785 0.93817 0.99130 0.96941 1.21004 0.93985 0.99110 0.98717 1.21174 0.94635 0.98828 0.98622 1.21241 1.00081 0.96899 0.95216 1.21168 0.93584 0.99596 0.99170 1.21023 0.95081 0.98577 0.97511 0.76996 0.89278 0.88487 0.75062 0.75342 0.91137 0.91128 0.92446 0.92454 0.96207 0.96197 0.92919 0.85770 0.85649 0.85898 0.85730 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 17.92 29.55 0.53 -1.50 16 2 C -0.20 -2.26 11.17 -37.12 -0.41 -2.68 16 3 C -0.01 -0.11 5.37 -29.51 -0.16 -0.27 16 4 C 0.19 1.64 2.44 -69.08 -0.17 1.47 16 5 H 0.10 1.00 7.44 -51.93 -0.39 0.61 16 6 N -0.70 -7.25 4.98 -55.36 -0.28 -7.52 16 7 C 0.51 6.72 7.20 -11.58 -0.08 6.64 16 8 O -0.51 -7.29 13.33 5.50 0.07 -7.22 16 9 C 0.50 7.58 7.89 -11.58 -0.09 7.49 16 10 O -0.53 -9.06 16.48 5.50 0.09 -8.97 16 11 N -0.69 -10.45 5.55 -60.73 -0.34 -10.79 16 12 C 0.11 1.97 5.67 -4.05 -0.02 1.95 16 13 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 14 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.10 -0.70 4.96 -104.63 -0.52 -1.21 16 24 C -0.11 -0.75 9.06 -39.59 -0.36 -1.11 16 25 C -0.11 -0.71 10.05 -39.58 -0.40 -1.11 16 26 C -0.12 -0.68 10.05 -39.59 -0.40 -1.07 16 27 C -0.12 -0.69 10.05 -39.58 -0.40 -1.09 16 28 C -0.10 -0.68 9.67 -39.58 -0.38 -1.06 16 29 H 0.21 1.96 7.80 -54.08 -0.42 1.54 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.41 3.91 6.33 -40.82 -0.26 3.65 16 33 H 0.41 5.67 7.95 -40.82 -0.32 5.34 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.12 0.74 6.90 -52.48 -0.36 0.38 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.48 8.06 -52.48 -0.42 0.06 16 44 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 45 H 0.13 0.65 8.04 -52.48 -0.42 0.23 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -33.22 390.58 -8.77 -41.99 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.37 Total: 5.05 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -3.55 Total: -8.96 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.12 Total: -44.27 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.16 Total: -16.19 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.22 -8.77 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328616472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.635 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds