Wall clock time and date at job start Tue Mar 31 2020 16:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 H 1.08997 * 109.47298 * 305.00526 * 4 3 2 6 6 N 1.46503 * 109.46849 * 65.00080 * 4 3 2 7 7 C 1.34780 * 119.99890 * 275.00184 * 6 4 3 8 8 O 1.21344 * 119.99900 * 359.97438 * 7 6 4 9 9 C 1.49456 * 119.99593 * 180.02562 * 7 6 4 10 10 O 1.21344 * 120.00507 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99593 * 179.97438 * 9 7 6 12 12 C 1.46495 * 120.00042 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47460 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47500 * 180.02562 * 13 12 11 15 15 C 1.50690 * 109.47442 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99972 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00051 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00253 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99905 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46839 * 89.99978 * 19 17 15 21 21 H 1.48498 * 109.47261 * 209.99825 * 19 17 15 22 22 H 1.48499 * 109.47254 * 330.00032 * 19 17 15 23 23 C 1.50699 * 109.47132 * 184.99713 * 4 3 2 24 24 C 1.38229 * 120.00268 * 279.73202 * 23 4 3 25 25 C 1.38234 * 120.00148 * 179.79230 * 24 23 4 26 26 C 1.38232 * 119.99604 * 0.43465 * 25 24 23 27 27 C 1.38233 * 120.00500 * 359.81424 * 26 25 24 28 28 C 1.38231 * 119.99496 * 100.00308 * 23 4 3 29 29 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 31 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 32 32 H 0.97004 * 119.99935 * 94.99705 * 6 4 3 33 33 H 0.97004 * 120.00175 * 359.97438 * 11 9 7 34 34 H 1.09002 * 109.46854 * 299.99741 * 12 11 9 35 35 H 1.09006 * 109.47286 * 59.99428 * 12 11 9 36 36 H 1.09002 * 109.46972 * 299.99787 * 13 12 11 37 37 H 1.08992 * 109.47195 * 59.99363 * 13 12 11 38 38 H 1.09002 * 109.46715 * 299.99799 * 14 13 12 39 39 H 1.09006 * 109.47383 * 59.99461 * 14 13 12 40 40 H 0.97004 * 120.00196 * 180.02562 * 18 17 15 41 41 H 1.08005 * 119.99764 * 359.97438 * 24 23 4 42 42 H 1.08002 * 120.00172 * 180.27420 * 25 24 23 43 43 H 1.08005 * 119.99795 * 179.83856 * 26 25 24 44 44 H 1.07999 * 120.00631 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.00444 * 359.97438 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 1 2.7210 0.6389 -2.0562 6 7 2.7673 2.3115 -0.7917 7 6 1.5497 2.7651 -1.1498 8 8 0.7753 2.0320 -1.7288 9 6 1.1540 4.1715 -0.8349 10 8 1.9286 4.9048 -0.2563 11 7 -0.0634 4.6253 -1.1935 12 6 -0.4516 6.0036 -0.8843 13 6 -1.8703 6.2610 -1.3962 14 6 -2.2755 7.7007 -1.0739 15 6 -3.6726 7.9543 -1.5785 16 1 -4.2169 7.1675 -2.0795 17 6 -4.2559 9.1909 -1.4007 18 7 -3.5929 10.1492 -0.7912 19 14 -5.9875 9.5055 -2.0270 20 1 -6.9675 9.1663 -0.9641 21 1 -6.1292 10.9379 -2.3921 22 1 -6.2423 8.6624 -3.2226 23 6 4.6575 0.8405 -1.1822 24 6 5.4427 1.5377 -0.2833 25 6 6.8203 1.4494 -0.3553 26 6 7.4128 0.6709 -1.3319 27 6 6.6277 -0.0223 -2.2341 28 6 5.2500 0.0627 -2.1594 29 1 -1.0502 -0.0001 0.0004 30 1 3.0092 0.3479 0.9672 31 1 3.0098 -1.0104 -0.1831 32 1 3.3866 2.8976 -0.3291 33 1 -0.6825 4.0393 -1.6563 34 1 -0.4209 6.1564 0.1945 35 1 0.2397 6.6933 -1.3687 36 1 -1.9006 6.1083 -2.4750 37 1 -2.5618 5.5715 -0.9122 38 1 -2.2452 7.8538 0.0049 39 1 -1.5838 8.3900 -1.5582 40 1 -4.0035 11.0191 -0.6657 41 1 4.9798 2.1492 0.4772 42 1 7.4338 1.9906 0.3499 43 1 8.4892 0.6039 -1.3897 44 1 7.0906 -0.6302 -2.9973 45 1 4.6365 -0.4789 -2.8643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328616472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:02 Heat of formation + Delta-G solvation = -23.819138 kcal Electronic energy + Delta-G solvation = -26147.177907 eV Core-core repulsion = 22322.884738 eV Total energy + Delta-G solvation = -3824.293168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90165 -40.54553 -39.49932 -37.33529 -36.90394 -35.25729 -34.28728 -33.05851 -32.55036 -31.76513 -29.89161 -28.97831 -26.63593 -25.23037 -24.08741 -23.46187 -22.38177 -21.80510 -21.23278 -19.85638 -18.89502 -18.51279 -18.00528 -17.74592 -17.22749 -16.87437 -16.50655 -16.31313 -16.20547 -15.94937 -15.53068 -15.21162 -15.10041 -14.88088 -14.29960 -14.27910 -14.16826 -14.04523 -13.78631 -13.53039 -13.45159 -13.02152 -12.85818 -12.76422 -12.55361 -12.41039 -12.05673 -11.88698 -11.71038 -11.58800 -11.48636 -11.24168 -11.05198 -10.69353 -10.55291 -10.31983 -10.20801 -9.82150 -9.69690 -8.19849 -6.30792 0.28832 0.36162 0.49925 1.28897 1.41825 1.42657 1.53788 1.95085 1.99595 2.15301 2.41138 2.59131 2.89170 3.13964 3.32602 3.41376 3.80416 3.90636 4.07179 4.08920 4.16663 4.19478 4.25249 4.32061 4.51182 4.58037 4.61484 4.69055 4.84558 4.85851 4.90276 5.03090 5.09561 5.13836 5.18182 5.20843 5.22064 5.50843 5.55446 5.60785 5.64369 5.69834 5.83775 5.88010 6.08502 6.22291 6.30899 6.69437 6.82006 6.86037 6.90846 7.38503 8.91996 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.001937 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.118466 B =14449.938798 C =15193.149991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.212 4.212 3 C -0.014 4.014 4 C 0.198 3.802 5 H 0.095 0.905 6 N -0.688 5.688 7 C 0.515 3.485 8 O -0.519 6.519 9 C 0.500 3.500 10 O -0.550 6.550 11 N -0.685 5.685 12 C 0.127 3.873 13 C -0.105 4.105 14 C 0.025 3.975 15 C -0.542 4.542 16 H 0.064 0.936 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.262 1.262 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.111 4.111 29 H 0.225 0.775 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.416 0.584 33 H 0.419 0.581 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.067 0.933 38 H -0.004 1.004 39 H -0.004 1.004 40 H 0.263 0.737 41 H 0.128 0.872 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.039 -25.514 -0.313 33.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.212 4.212 3 C -0.051 4.051 4 C 0.095 3.905 5 H 0.113 0.887 6 N -0.343 5.343 7 C 0.294 3.706 8 O -0.394 6.394 9 C 0.281 3.719 10 O -0.428 6.428 11 N -0.338 5.338 12 C 0.004 3.996 13 C -0.143 4.143 14 C -0.013 4.013 15 C -0.580 4.580 16 H 0.082 0.918 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.186 1.186 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.130 4.130 29 H 0.241 0.759 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.255 0.745 33 H 0.256 0.744 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.072 0.928 41 H 0.146 0.854 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 22.015 -25.341 -0.275 33.569 hybrid contribution -1.185 0.820 -0.051 1.442 sum 20.830 -24.521 -0.327 32.176 Atomic orbital electron populations 1.25339 0.96790 1.00016 0.99809 1.23271 0.95161 1.01318 1.01416 1.19214 0.84299 1.01651 0.99929 1.19857 0.91268 0.79952 0.99445 0.88672 1.45865 1.15357 1.14398 1.58672 1.19868 0.83352 0.87160 0.80176 1.90784 1.51093 1.57299 1.40230 1.20413 0.82889 0.88486 0.80134 1.90739 1.51733 1.58573 1.41765 1.45862 1.15639 1.14760 1.57502 1.21470 0.96790 0.80742 1.00562 1.21631 0.93241 0.98401 1.01025 1.18932 0.95299 0.91656 0.95399 1.21670 1.01033 0.97755 1.37551 0.91764 1.25992 1.02464 0.96087 0.95460 1.70097 1.39373 1.04032 1.43787 0.85437 0.79229 0.77337 0.78972 1.19844 1.20939 1.18649 1.19669 0.92744 1.00185 0.97824 1.21137 0.94485 0.99300 0.98899 1.21422 0.94568 0.99043 0.99120 1.21552 1.01216 0.96297 0.94776 1.21448 0.93386 0.99642 0.99574 1.21222 0.95716 0.98558 0.97481 0.75870 0.88269 0.86331 0.74512 0.74354 0.91822 0.91816 0.91492 0.91445 0.98548 0.98553 0.92788 0.85370 0.84273 0.84051 0.83888 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.58 17.92 74.32 1.33 -3.25 16 2 C -0.21 -4.59 11.17 31.13 0.35 -4.24 16 3 C -0.01 -0.20 5.37 28.79 0.15 -0.05 16 4 C 0.20 3.15 2.44 44.25 0.11 3.26 16 5 H 0.10 1.73 7.44 -2.39 -0.02 1.71 16 6 N -0.69 -13.61 4.98 -447.42 -2.23 -15.84 16 7 C 0.51 13.21 7.20 87.27 0.63 13.84 16 8 O -0.52 -14.59 13.33 -3.23 -0.04 -14.63 16 9 C 0.50 14.92 7.89 87.27 0.69 15.61 16 10 O -0.55 -18.75 16.48 -3.23 -0.05 -18.81 16 11 N -0.69 -20.34 5.55 -464.41 -2.58 -22.92 16 12 C 0.13 4.41 5.67 86.38 0.49 4.90 16 13 C -0.11 -4.07 5.27 30.59 0.16 -3.91 16 14 C 0.02 1.28 4.97 29.84 0.15 1.43 16 15 C -0.54 -30.30 9.11 25.60 0.23 -30.06 16 16 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 17 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 18 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 19 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 23 C -0.10 -1.35 4.96 -19.87 -0.10 -1.45 16 24 C -0.12 -1.47 9.06 22.27 0.20 -1.27 16 25 C -0.12 -1.32 10.05 22.27 0.22 -1.09 16 26 C -0.12 -1.14 10.05 22.27 0.22 -0.92 16 27 C -0.12 -1.18 10.05 22.27 0.22 -0.96 16 28 C -0.11 -1.26 9.67 22.27 0.22 -1.05 16 29 H 0.22 4.09 7.80 -4.41 -0.03 4.05 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.42 7.55 6.33 -92.71 -0.59 6.96 16 33 H 0.42 11.14 7.95 -92.71 -0.74 10.40 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.13 1.38 6.90 -2.91 -0.02 1.36 16 42 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.14 0.75 8.06 -2.91 -0.02 0.73 16 44 H 0.14 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.14 1.19 8.04 -2.91 -0.02 1.16 16 Total: -1.00 -70.94 390.58 2.84 -68.11 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.32 Total: 23.31 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.74 Total: -8.89 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -4.52 Total: -95.09 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.10 Total: -33.44 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.94 2.84 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328616472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.289 kcal (2) G-P(sol) polarization free energy of solvation -70.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds