Wall clock time and date at job start Tue Mar 31 2020 16:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47521 * 2 1 4 4 C 1.53008 * 109.47092 * 239.99951 * 2 1 3 5 5 N 1.46501 * 109.47116 * 120.00731 * 2 1 3 6 6 C 1.34946 * 126.04086 * 75.25014 * 5 2 1 7 7 C 1.35314 * 107.74374 * 180.14940 * 6 5 2 8 8 C 1.50704 * 126.03852 * 179.87612 * 7 6 5 9 9 O 1.45202 * 109.47239 * 269.72087 * 8 7 6 10 10 C 1.34776 * 117.00271 * 179.97438 * 9 8 7 11 11 O 1.21506 * 119.99506 * 0.02562 * 10 9 8 12 12 C 1.47498 * 120.00105 * 179.97438 * 10 9 8 13 13 C 1.40073 * 119.90076 * 359.72596 * 12 10 9 14 14 C 1.36306 * 120.09870 * 179.76213 * 13 12 10 15 15 C 1.40900 * 119.89887 * 0.50689 * 14 13 12 16 16 C 1.41091 * 120.09895 * 179.71717 * 15 14 13 17 17 H 1.07996 * 120.00162 * 204.66276 * 16 15 14 18 18 C 1.40245 * 119.99518 * 24.67179 * 16 15 14 19 19 N 1.30632 * 120.00561 * 17.86071 * 18 16 15 20 20 Si 1.86807 * 119.99529 * 197.85959 * 18 16 15 21 21 H 1.48497 * 109.46907 * 90.00094 * 20 18 16 22 22 H 1.48499 * 109.46857 * 209.99734 * 20 18 16 23 23 H 1.48497 * 109.47049 * 329.99984 * 20 18 16 24 24 C 1.40904 * 119.80082 * 359.74792 * 15 14 13 25 25 C 1.36298 * 119.90101 * 359.97438 * 24 15 14 26 26 C 1.39864 * 107.92430 * 359.61335 * 7 6 5 27 27 N 1.30837 * 108.20275 * 0.24219 * 26 7 6 28 28 H 1.08998 * 109.47110 * 300.00104 * 1 2 3 29 29 H 1.09002 * 109.46857 * 59.99641 * 1 2 3 30 30 H 1.08992 * 109.47606 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47115 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47348 * 300.00058 * 3 2 1 33 33 H 1.09003 * 109.47083 * 60.00320 * 3 2 1 34 34 H 1.09005 * 109.46936 * 300.00636 * 4 2 1 35 35 H 1.08999 * 109.46583 * 60.00074 * 4 2 1 36 36 H 1.08994 * 109.47257 * 180.02562 * 4 2 1 37 37 H 1.08004 * 126.12560 * 0.02562 * 6 5 2 38 38 H 1.08998 * 109.47107 * 149.71633 * 8 7 6 39 39 H 1.08995 * 109.47019 * 29.71653 * 8 7 6 40 40 H 1.07997 * 119.94650 * 0.02562 * 13 12 10 41 41 H 1.07997 * 120.04699 * 180.23157 * 14 13 12 42 42 H 0.96998 * 120.00155 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.04621 * 179.97438 * 24 15 14 44 44 H 1.07993 * 119.95398 * 179.97438 * 25 24 15 45 45 H 1.08001 * 125.90084 * 180.21398 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6908 1.1961 6 6 2.0210 -2.0252 1.3968 7 6 2.5482 -2.2570 2.6213 8 6 2.7419 -3.6072 3.2621 9 8 1.5574 -3.9544 4.0269 10 6 1.5681 -5.1405 4.6668 11 8 2.5408 -5.8644 4.5880 12 6 0.3996 -5.5592 5.4635 13 6 -0.7178 -4.7199 5.5584 14 6 -1.8018 -5.1050 6.2896 15 6 -1.7929 -6.3447 6.9593 16 6 -2.9103 -6.7448 7.7222 17 1 -2.7877 -7.4512 8.5299 18 6 -4.1801 -6.2252 7.4316 19 7 -4.4065 -5.6623 6.2747 20 14 -5.5479 -6.3383 8.6989 21 1 -5.5243 -5.1299 9.5617 22 1 -6.8584 -6.4263 8.0061 23 1 -5.3482 -7.5483 9.5361 24 6 -0.6645 -7.1832 6.8653 25 6 0.4128 -6.7926 6.1273 26 6 2.8871 -1.0226 3.1847 27 7 2.5699 -0.0829 2.3313 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6765 -1.7490 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7217 -1.2491 37 1 1.6643 -2.7739 0.7049 38 1 3.6060 -3.5739 3.9256 39 1 2.9069 -4.3565 2.4879 40 1 -0.7222 -3.7682 5.0480 41 1 -2.6644 -4.4589 6.3592 42 1 -5.2846 -5.3026 6.0739 43 1 -0.6532 -8.1341 7.3774 44 1 1.2782 -7.4345 6.0550 45 1 3.3332 -0.8711 4.1565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333213617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:27 Heat of formation + Delta-G solvation = -3.864235 kcal Electronic energy + Delta-G solvation = -26563.982522 eV Core-core repulsion = 22740.554663 eV Total energy + Delta-G solvation = -3823.427859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.43875 -39.42254 -37.45360 -37.04882 -35.49921 -33.92178 -31.34733 -30.73909 -30.19238 -29.47684 -27.87717 -27.77164 -26.50672 -25.35661 -22.68933 -22.20668 -20.93234 -20.19706 -19.85284 -19.51128 -17.54079 -17.08763 -16.79633 -16.00603 -15.50889 -15.45320 -15.31776 -14.78400 -14.37857 -14.04363 -13.87769 -13.63115 -13.33711 -13.22548 -12.89919 -12.73392 -12.60999 -12.55153 -12.36419 -12.15246 -12.09830 -12.06540 -11.72976 -11.53631 -11.42891 -11.37303 -11.29764 -10.97099 -10.72953 -10.59433 -10.09384 -9.99449 -9.59807 -9.44910 -9.42954 -9.35745 -8.51812 -7.72665 -7.61232 -7.07709 -4.65536 1.80112 2.10022 2.29815 2.60366 2.88256 2.93909 2.96555 3.05461 3.67872 3.72441 3.84961 4.09802 4.37068 4.47853 4.49473 4.67391 4.83547 5.05852 5.13782 5.21736 5.23747 5.27720 5.34980 5.41235 5.48618 5.54372 5.59578 5.63774 5.71317 5.81820 5.92200 6.11792 6.12332 6.24461 6.29813 6.59769 6.76508 6.82436 6.94948 7.01886 7.08879 7.20138 7.44118 7.65703 7.70666 7.81102 7.86784 8.03098 8.37897 8.58832 8.72050 8.82986 9.83592 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014352 B = 0.002478 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.532790 B =11296.283582 C =12676.489985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 C -0.142 4.142 4 C -0.160 4.160 5 N -0.362 5.362 6 C 0.082 3.918 7 C -0.241 4.241 8 C 0.148 3.852 9 O -0.357 6.357 10 C 0.514 3.486 11 O -0.555 6.555 12 C -0.273 4.273 13 C -0.042 4.042 14 C -0.186 4.186 15 C 0.131 3.869 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.765 5.765 20 Si 0.915 3.085 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.258 1.258 24 C -0.240 4.240 25 C -0.019 4.019 26 C 0.066 3.934 27 N -0.296 5.296 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.172 0.828 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.288 0.712 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.317 11.167 -12.326 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 C -0.200 4.200 4 C -0.219 4.219 5 N -0.145 5.145 6 C -0.066 4.066 7 C -0.252 4.252 8 C 0.073 3.927 9 O -0.275 6.275 10 C 0.367 3.633 11 O -0.450 6.450 12 C -0.275 4.275 13 C -0.060 4.060 14 C -0.205 4.205 15 C 0.128 3.872 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.149 4.149 19 N -0.388 5.388 20 Si 0.739 3.261 21 H -0.188 1.188 22 H -0.200 1.200 23 H -0.182 1.182 24 C -0.259 4.259 25 C -0.037 4.037 26 C -0.120 4.120 27 N -0.116 5.116 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.189 0.811 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.339 12.445 -12.895 19.009 hybrid contribution -0.595 -1.028 0.539 1.305 sum 5.744 11.417 -12.356 17.777 Atomic orbital electron populations 1.22277 0.92776 1.03460 1.03413 1.20732 0.94523 0.93686 0.81329 1.21901 1.02068 0.92958 1.03074 1.22258 1.02294 1.01204 0.96101 1.48859 1.47494 1.04073 1.14076 1.22253 0.99390 0.86583 0.98329 1.19748 1.14078 0.95316 0.96084 1.20792 0.86746 0.91266 0.93909 1.86683 1.41828 1.38324 1.60645 1.21553 0.87473 0.77802 0.76503 1.90687 1.36375 1.54412 1.63477 1.18248 0.94935 1.00620 1.13745 1.20651 0.92389 0.96995 0.96013 1.21010 0.98242 0.97558 1.03657 1.17849 0.91426 0.89933 0.88010 1.19917 0.91416 1.21386 1.13614 0.89503 1.26148 1.00739 0.92573 0.95449 1.69743 1.24316 1.25063 1.19638 0.86178 0.78815 0.80318 0.80817 1.18837 1.19956 1.18203 1.20682 0.96486 1.00555 1.08178 1.20356 0.96662 0.93333 0.93395 1.23811 0.99072 0.89972 0.99157 1.77317 1.17984 1.21883 0.94436 0.91408 0.90429 0.91553 0.91702 0.91023 0.90936 0.91463 0.90061 0.91507 0.81113 0.91042 0.91450 0.88092 0.86120 0.90065 0.88112 0.87948 0.79973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.73 37.16 0.32 -0.96 16 2 C 0.18 1.54 1.24 -131.82 -0.16 1.38 16 3 C -0.14 -1.11 8.09 37.16 0.30 -0.81 16 4 C -0.16 -1.03 8.29 37.16 0.31 -0.72 16 5 N -0.36 -4.28 3.43 -48.65 -0.17 -4.45 16 6 C 0.08 1.00 10.51 -17.22 -0.18 0.82 16 7 C -0.24 -3.37 5.74 -105.05 -0.60 -3.97 16 8 C 0.15 2.32 5.95 36.01 0.21 2.54 16 9 O -0.36 -7.05 9.43 -40.70 -0.38 -7.43 16 10 C 0.51 11.50 7.89 34.50 0.27 11.77 16 11 O -0.56 -13.03 16.11 -19.27 -0.31 -13.34 16 12 C -0.27 -6.49 5.89 -104.75 -0.62 -7.11 16 13 C -0.04 -0.99 9.55 -39.59 -0.38 -1.37 16 14 C -0.19 -4.66 8.63 -39.27 -0.34 -5.00 16 15 C 0.13 3.35 5.58 -106.80 -0.60 2.75 16 16 C -0.44 -10.75 9.04 -37.75 -0.34 -11.09 16 17 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.69 5.14 -17.31 -0.09 1.60 16 19 N -0.76 -18.29 10.95 55.56 0.61 -17.68 16 20 Si 0.92 17.10 29.60 -169.99 -5.03 12.07 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 23 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 24 C -0.24 -5.77 9.73 -39.27 -0.38 -6.15 16 25 C -0.02 -0.44 9.52 -39.59 -0.38 -0.82 16 26 C 0.07 0.90 11.96 -17.37 -0.21 0.69 16 27 N -0.30 -4.05 11.66 30.62 0.36 -3.69 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 34 H 0.07 0.41 7.36 -51.93 -0.38 0.03 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.17 1.67 7.54 -52.48 -0.40 1.28 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.10 2.24 7.59 -52.49 -0.40 1.84 16 41 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 42 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 43 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 44 H 0.10 2.29 7.63 -52.49 -0.40 1.88 16 45 H 0.18 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -29.58 383.90 -8.51 -38.09 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.52 Total: 7.10 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.85 Total: -16.46 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.80 Total: -25.82 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.69 Total: -20.77 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.58 -8.51 -38.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333213617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.225 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds