Wall clock time and date at job start Tue Mar 31 2020 16:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47521 * 2 1 4 4 C 1.53008 * 109.47092 * 239.99951 * 2 1 3 5 5 N 1.46501 * 109.47116 * 120.00731 * 2 1 3 6 6 C 1.34946 * 126.04086 * 75.25014 * 5 2 1 7 7 C 1.35314 * 107.74374 * 180.14940 * 6 5 2 8 8 C 1.50704 * 126.03852 * 179.87612 * 7 6 5 9 9 O 1.45202 * 109.47239 * 269.72087 * 8 7 6 10 10 C 1.34776 * 117.00271 * 179.97438 * 9 8 7 11 11 O 1.21506 * 119.99506 * 0.02562 * 10 9 8 12 12 C 1.47498 * 120.00105 * 179.97438 * 10 9 8 13 13 C 1.40073 * 119.90076 * 359.72596 * 12 10 9 14 14 C 1.36306 * 120.09870 * 179.76213 * 13 12 10 15 15 C 1.40900 * 119.89887 * 0.50689 * 14 13 12 16 16 C 1.41091 * 120.09895 * 179.71717 * 15 14 13 17 17 H 1.07996 * 120.00162 * 204.66276 * 16 15 14 18 18 C 1.40245 * 119.99518 * 24.67179 * 16 15 14 19 19 N 1.30632 * 120.00561 * 17.86071 * 18 16 15 20 20 Si 1.86807 * 119.99529 * 197.85959 * 18 16 15 21 21 H 1.48497 * 109.46907 * 90.00094 * 20 18 16 22 22 H 1.48499 * 109.46857 * 209.99734 * 20 18 16 23 23 H 1.48497 * 109.47049 * 329.99984 * 20 18 16 24 24 C 1.40904 * 119.80082 * 359.74792 * 15 14 13 25 25 C 1.36298 * 119.90101 * 359.97438 * 24 15 14 26 26 C 1.39864 * 107.92430 * 359.61335 * 7 6 5 27 27 N 1.30837 * 108.20275 * 0.24219 * 26 7 6 28 28 H 1.08998 * 109.47110 * 300.00104 * 1 2 3 29 29 H 1.09002 * 109.46857 * 59.99641 * 1 2 3 30 30 H 1.08992 * 109.47606 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47115 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47348 * 300.00058 * 3 2 1 33 33 H 1.09003 * 109.47083 * 60.00320 * 3 2 1 34 34 H 1.09005 * 109.46936 * 300.00636 * 4 2 1 35 35 H 1.08999 * 109.46583 * 60.00074 * 4 2 1 36 36 H 1.08994 * 109.47257 * 180.02562 * 4 2 1 37 37 H 1.08004 * 126.12560 * 0.02562 * 6 5 2 38 38 H 1.08998 * 109.47107 * 149.71633 * 8 7 6 39 39 H 1.08995 * 109.47019 * 29.71653 * 8 7 6 40 40 H 1.07997 * 119.94650 * 0.02562 * 13 12 10 41 41 H 1.07997 * 120.04699 * 180.23157 * 14 13 12 42 42 H 0.96998 * 120.00155 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.04621 * 179.97438 * 24 15 14 44 44 H 1.07993 * 119.95398 * 179.97438 * 25 24 15 45 45 H 1.08001 * 125.90084 * 180.21398 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6908 1.1961 6 6 2.0210 -2.0252 1.3968 7 6 2.5482 -2.2570 2.6213 8 6 2.7419 -3.6072 3.2621 9 8 1.5574 -3.9544 4.0269 10 6 1.5681 -5.1405 4.6668 11 8 2.5408 -5.8644 4.5880 12 6 0.3996 -5.5592 5.4635 13 6 -0.7178 -4.7199 5.5584 14 6 -1.8018 -5.1050 6.2896 15 6 -1.7929 -6.3447 6.9593 16 6 -2.9103 -6.7448 7.7222 17 1 -2.7877 -7.4512 8.5299 18 6 -4.1801 -6.2252 7.4316 19 7 -4.4065 -5.6623 6.2747 20 14 -5.5479 -6.3383 8.6989 21 1 -5.5243 -5.1299 9.5617 22 1 -6.8584 -6.4263 8.0061 23 1 -5.3482 -7.5483 9.5361 24 6 -0.6645 -7.1832 6.8653 25 6 0.4128 -6.7926 6.1273 26 6 2.8871 -1.0226 3.1847 27 7 2.5699 -0.0829 2.3313 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6765 -1.7490 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7217 -1.2491 37 1 1.6643 -2.7739 0.7049 38 1 3.6060 -3.5739 3.9256 39 1 2.9069 -4.3565 2.4879 40 1 -0.7222 -3.7682 5.0480 41 1 -2.6644 -4.4589 6.3592 42 1 -5.2846 -5.3026 6.0739 43 1 -0.6532 -8.1341 7.3774 44 1 1.2782 -7.4345 6.0550 45 1 3.3332 -0.8711 4.1565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333213617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:26 Heat of formation + Delta-G solvation = -16.879913 kcal Electronic energy + Delta-G solvation = -26564.546924 eV Core-core repulsion = 22740.554663 eV Total energy + Delta-G solvation = -3823.992261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.40738 -41.10324 -39.23606 -37.87034 -37.09820 -35.72932 -32.63769 -31.89022 -31.64960 -31.35629 -28.55745 -28.38443 -28.06747 -26.68762 -24.07575 -23.48255 -22.80663 -21.61809 -21.20738 -20.37470 -19.38868 -18.52337 -18.07053 -17.51012 -17.07055 -16.98364 -16.23862 -15.77297 -15.61331 -15.32468 -15.17682 -14.90542 -14.63936 -14.49329 -14.43062 -13.99386 -13.80033 -13.60222 -13.41193 -13.23574 -13.18563 -13.14783 -12.96788 -12.86637 -12.76292 -12.64054 -12.39043 -12.21887 -12.14743 -11.79960 -11.72998 -11.41345 -11.37242 -11.21191 -11.11844 -10.40473 -9.61498 -9.56745 -9.51132 -8.83609 -6.53652 0.27781 0.81201 1.14932 1.37605 1.39897 1.42264 1.52135 1.54553 1.93019 2.15573 2.42011 2.70048 3.36165 3.64385 3.74508 3.79364 3.86718 3.92156 4.09386 4.24145 4.28505 4.37984 4.43719 4.53026 4.57641 4.58665 4.69015 4.71181 4.78963 4.81349 4.82783 4.94075 4.99866 5.01694 5.09237 5.14084 5.21025 5.24421 5.24661 5.51230 5.57591 5.60604 5.84964 5.93206 5.98424 6.08040 6.16691 6.50788 6.66268 6.71818 6.83794 7.10466 8.11153 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014352 B = 0.002478 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.532790 B =11296.283582 C =12676.489985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 C -0.138 4.138 4 C -0.156 4.156 5 N -0.358 5.358 6 C 0.088 3.912 7 C -0.265 4.265 8 C 0.149 3.851 9 O -0.361 6.361 10 C 0.520 3.480 11 O -0.569 6.569 12 C -0.289 4.289 13 C -0.038 4.038 14 C -0.204 4.204 15 C 0.105 3.895 16 C -0.460 4.460 17 H 0.093 0.907 18 C 0.035 3.965 19 N -0.792 5.792 20 Si 0.991 3.009 21 H -0.260 1.260 22 H -0.265 1.265 23 H -0.253 1.253 24 C -0.250 4.250 25 C -0.023 4.023 26 C 0.057 3.943 27 N -0.317 5.317 28 H 0.046 0.954 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.196 0.804 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.299 0.701 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 11.635 -13.405 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.087 3.913 3 C -0.196 4.196 4 C -0.214 4.214 5 N -0.140 5.140 6 C -0.061 4.061 7 C -0.276 4.276 8 C 0.074 3.926 9 O -0.279 6.279 10 C 0.373 3.627 11 O -0.465 6.465 12 C -0.291 4.291 13 C -0.057 4.057 14 C -0.223 4.223 15 C 0.101 3.899 16 C -0.487 4.487 17 H 0.111 0.889 18 C -0.185 4.185 19 N -0.415 5.415 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.189 1.189 23 H -0.177 1.177 24 C -0.269 4.269 25 C -0.042 4.042 26 C -0.129 4.129 27 N -0.138 5.138 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.213 0.787 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.526 12.942 -14.002 19.852 hybrid contribution -0.319 -1.089 0.747 1.359 sum 5.207 11.853 -13.255 18.529 Atomic orbital electron populations 1.22278 0.92194 1.03303 1.03833 1.21168 0.94989 0.94180 0.81001 1.21890 1.01464 0.92624 1.03591 1.22263 1.01934 1.01487 0.95692 1.49244 1.46366 1.04101 1.14318 1.22628 0.98016 0.87312 0.98101 1.19710 1.16254 0.94596 0.97084 1.20998 0.85355 0.92442 0.93775 1.86661 1.43856 1.36795 1.60553 1.21266 0.86705 0.78380 0.76372 1.90668 1.36712 1.55083 1.64074 1.18486 0.95613 1.00817 1.14188 1.20735 0.92062 0.97377 0.95553 1.21002 0.98525 0.97796 1.04970 1.18194 0.92478 0.90450 0.88761 1.20233 0.92203 1.22279 1.13945 0.88900 1.27037 1.02688 0.91577 0.97181 1.69769 1.25615 1.24953 1.21160 0.85055 0.75621 0.80384 0.77919 1.18445 1.18896 1.17673 1.20869 0.96392 1.01064 1.08563 1.20524 0.96885 0.93585 0.93168 1.24097 0.99099 0.89862 0.99827 1.77280 1.18731 1.22469 0.95272 0.93451 0.87548 0.91972 0.92568 0.88097 0.92806 0.91083 0.87463 0.92061 0.78728 0.90665 0.90622 0.87026 0.87004 0.88988 0.86771 0.86884 0.78721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 8.73 71.98 0.63 -1.61 16 2 C 0.17 2.58 1.24 3.60 0.00 2.58 16 3 C -0.14 -1.95 8.09 71.98 0.58 -1.37 16 4 C -0.16 -1.57 8.29 71.98 0.60 -0.98 16 5 N -0.36 -8.11 3.43 -307.84 -1.06 -9.17 16 6 C 0.09 2.05 10.51 83.54 0.88 2.93 16 7 C -0.26 -7.27 5.74 -20.14 -0.12 -7.38 16 8 C 0.15 4.59 5.95 71.24 0.42 5.01 16 9 O -0.36 -14.17 9.43 -56.87 -0.54 -14.70 16 10 C 0.52 23.22 7.89 70.26 0.55 23.77 16 11 O -0.57 -26.56 16.11 19.82 0.32 -26.24 16 12 C -0.29 -13.83 5.89 -19.95 -0.12 -13.94 16 13 C -0.04 -1.85 9.55 22.26 0.21 -1.64 16 14 C -0.20 -10.46 8.63 22.47 0.19 -10.27 16 15 C 0.10 5.42 5.58 -21.28 -0.12 5.30 16 16 C -0.46 -22.80 9.04 23.46 0.21 -22.59 16 17 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 18 C 0.04 1.61 5.14 85.36 0.44 2.05 16 19 N -0.79 -37.86 10.95 21.87 0.24 -37.62 16 20 Si 0.99 34.15 29.60 68.60 2.03 36.18 16 21 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 22 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 23 H -0.25 -8.47 7.11 99.48 0.71 -7.77 16 24 C -0.25 -12.15 9.73 22.47 0.22 -11.93 16 25 C -0.02 -1.10 9.52 22.26 0.21 -0.89 16 26 C 0.06 1.53 11.96 85.23 1.02 2.55 16 27 N -0.32 -8.60 11.66 -57.03 -0.66 -9.26 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.96 8.04 -2.39 -0.02 0.94 16 34 H 0.07 0.68 7.36 -2.38 -0.02 0.66 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.20 3.43 7.54 -2.91 -0.02 3.41 16 38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.11 5.01 7.59 -2.91 -0.02 4.98 16 41 H 0.11 5.84 6.16 -2.91 -0.02 5.82 16 42 H 0.30 12.66 8.29 -92.71 -0.77 11.89 16 43 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 44 H 0.11 5.04 7.63 -2.91 -0.02 5.02 16 45 H 0.20 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -63.75 383.90 7.14 -56.61 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.99 Total: 32.61 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 5.82 Total: -28.40 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -1.48 Total: -56.05 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.22 Total: -40.95 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal Total: -63.75 7.14 -56.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333213617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.729 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds