Wall clock time and date at job start Tue Mar 31 2020 15:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39623 * 120.06626 * 64.59872 * 3 2 1 5 5 C 1.37784 * 119.93248 * 179.80758 * 4 3 2 6 6 C 1.39083 * 120.06687 * 0.44836 * 5 4 3 7 7 N 1.39569 * 119.93516 * 179.76297 * 6 5 4 8 8 C 1.34772 * 120.00279 * 213.52911 * 7 6 5 9 9 O 1.21384 * 119.99862 * 5.27982 * 8 7 6 10 10 C 1.49339 * 120.00437 * 185.27986 * 8 7 6 11 11 O 1.21362 * 119.99738 * 359.97438 * 10 8 7 12 12 N 1.34776 * 119.99859 * 179.97438 * 10 8 7 13 13 C 1.46502 * 119.99718 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47331 * 180.02562 * 13 12 10 15 15 C 1.53011 * 109.46972 * 299.99879 * 14 13 12 16 16 C 1.53001 * 109.47384 * 59.99577 * 14 13 12 17 17 C 1.52998 * 109.47321 * 180.02562 * 14 13 12 18 18 C 1.50708 * 109.47142 * 179.97438 * 17 14 13 19 19 H 1.08000 * 119.99784 * 0.02562 * 18 17 14 20 20 C 1.37870 * 119.99842 * 180.02562 * 18 17 14 21 21 N 1.31514 * 120.00227 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99784 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47334 * 89.99771 * 22 20 18 24 24 H 1.48501 * 109.47057 * 209.99541 * 22 20 18 25 25 H 1.48500 * 109.47267 * 329.99509 * 22 20 18 26 26 C 1.39072 * 120.12793 * 359.78484 * 6 5 4 27 27 C 1.37787 * 120.06700 * 0.02562 * 26 6 5 28 28 H 4.51996 * 14.04475 * 0.02562 * 4 2 1 29 29 H 1.07996 * 120.03584 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.97092 * 180.18754 * 5 4 3 31 31 H 0.97002 * 120.00187 * 33.52396 * 7 6 5 32 32 H 0.97000 * 120.00520 * 0.02562 * 12 10 8 33 33 H 1.09003 * 109.46849 * 299.99880 * 13 12 10 34 34 H 1.09003 * 109.47275 * 59.99645 * 13 12 10 35 35 H 1.08997 * 109.46464 * 59.99697 * 15 14 13 36 36 H 1.08997 * 109.46769 * 180.02562 * 15 14 13 37 37 H 1.09003 * 109.46761 * 300.00027 * 15 14 13 38 38 H 1.09003 * 109.47049 * 60.00171 * 16 14 13 39 39 H 1.08994 * 109.47181 * 180.02562 * 16 14 13 40 40 H 1.08996 * 109.47153 * 300.00311 * 16 14 13 41 41 H 1.08999 * 109.46892 * 299.99149 * 17 14 13 42 42 H 1.08998 * 109.47425 * 59.99885 * 17 14 13 43 43 H 0.97003 * 119.99980 * 180.02562 * 21 20 18 44 44 H 1.07991 * 119.96329 * 179.97438 * 26 6 5 45 45 H 1.08001 * 120.02836 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3058 -0.5174 -1.0915 5 6 4.6836 -0.5118 -1.0904 6 6 5.3774 0.0007 0.0007 7 7 6.7731 0.0005 0.0011 8 6 7.4466 -0.1693 1.1560 9 8 6.8433 -0.4175 2.1796 10 6 8.9353 -0.0522 1.1765 11 8 9.5386 0.1955 0.1530 12 7 9.6087 -0.2215 2.3317 13 6 11.0690 -0.1061 2.3518 14 6 11.5796 -0.3414 3.7747 15 6 10.9724 0.7030 4.7137 16 6 11.1723 -1.7416 4.2378 17 6 13.1047 -0.2202 3.7959 18 6 13.6075 -0.4514 5.1977 19 1 12.9092 -0.6639 5.9937 20 6 14.9590 -0.3915 5.4639 21 7 15.8093 -0.1331 4.4944 22 14 15.5823 -0.6788 7.2012 23 1 15.8608 -2.1246 7.3945 24 1 16.8297 0.0983 7.4143 25 1 14.5522 -0.2384 8.1759 26 6 4.6831 0.5129 1.0914 27 6 3.3053 0.5135 1.0943 28 1 -1.0499 0.0002 -0.0007 29 1 2.7676 -0.9188 -1.9375 30 1 5.2255 -0.9095 -1.9357 31 1 7.2584 0.1225 -0.8299 32 1 9.1265 -0.4198 3.1496 33 1 11.5016 -0.8504 1.6833 34 1 11.3593 0.8913 2.0215 35 1 9.8860 0.6171 4.6986 36 1 11.3366 0.5356 5.7273 37 1 11.2627 1.7006 4.3838 38 1 11.6048 -2.4856 3.5689 39 1 11.5356 -1.9090 5.2516 40 1 10.0858 -1.8275 4.2228 41 1 13.5375 -0.9640 3.1270 42 1 13.3945 0.7775 3.4663 43 1 16.7602 -0.0914 4.6817 44 1 5.2245 0.9098 1.9374 45 1 2.7667 0.9111 1.9418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339889008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:10 Heat of formation + Delta-G solvation = -0.460649 kcal Electronic energy + Delta-G solvation = -26257.170423 eV Core-core repulsion = 22433.890155 eV Total energy + Delta-G solvation = -3823.280268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 4.78 seconds Orbital eigenvalues (eV) -41.28793 -39.73959 -38.53478 -37.25806 -35.73638 -33.81793 -33.32799 -32.13863 -31.44759 -29.78452 -27.44117 -26.83948 -26.56059 -25.03462 -23.40942 -23.18282 -22.21202 -20.42353 -19.36446 -19.31651 -18.17909 -17.53649 -16.67094 -16.36416 -16.24148 -16.02634 -15.48691 -15.10857 -14.61321 -14.53590 -14.45244 -14.01881 -13.83700 -13.68448 -13.37468 -13.19095 -12.85042 -12.78693 -12.25944 -12.12576 -12.09780 -11.79288 -11.63141 -11.23497 -11.04904 -10.88084 -10.84168 -10.68175 -10.49469 -10.43711 -10.30166 -9.95097 -9.84634 -9.39124 -9.23930 -9.05092 -8.98395 -8.39322 -8.37424 -6.03525 -4.04929 0.38169 0.99033 1.28831 2.11355 2.37169 2.60442 3.07795 3.29334 3.36543 3.38264 3.46432 3.62472 3.89309 4.31278 4.42993 4.49649 4.53057 4.90421 5.04893 5.13728 5.27746 5.32090 5.34808 5.50735 5.59226 5.67288 5.82379 5.88699 5.96850 6.08270 6.08699 6.09821 6.13941 6.29049 6.30549 6.49656 6.58665 6.62222 6.71217 6.99244 7.01953 7.04768 7.15381 7.24510 7.52223 7.58526 7.69723 7.91306 7.94900 8.36224 8.99574 9.58599 11.07834 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033747 B = 0.001876 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.505919 B =14921.366527 C =15474.174503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C -0.011 4.011 4 C -0.074 4.074 5 C -0.141 4.141 6 C 0.158 3.842 7 N -0.648 5.648 8 C 0.509 3.491 9 O -0.496 6.496 10 C 0.502 3.498 11 O -0.523 6.523 12 N -0.683 5.683 13 C 0.124 3.876 14 C -0.073 4.073 15 C -0.130 4.130 16 C -0.130 4.130 17 C 0.037 3.963 18 C -0.513 4.513 19 H 0.060 0.940 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.120 4.120 27 C -0.072 4.072 28 H 0.224 0.776 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.425 0.575 32 H 0.412 0.588 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.030 0.970 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.142 0.858 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.970 0.466 -10.666 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C -0.012 4.012 4 C -0.092 4.092 5 C -0.161 4.161 6 C 0.063 3.937 7 N -0.295 5.295 8 C 0.292 3.708 9 O -0.369 6.369 10 C 0.281 3.719 11 O -0.400 6.400 12 N -0.335 5.335 13 C 0.002 3.998 14 C -0.074 4.074 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.001 4.001 18 C -0.551 4.551 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.718 3.282 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.140 4.140 27 C -0.091 4.091 28 H 0.240 0.760 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.264 0.736 32 H 0.250 0.750 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.159 0.841 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.651 0.502 -10.647 27.778 hybrid contribution 0.348 -0.214 0.870 0.961 sum -25.303 0.288 -9.777 27.128 Atomic orbital electron populations 1.24884 0.95773 0.99836 0.99415 1.20016 0.91969 1.01167 1.01298 1.15968 0.86683 1.02865 0.95668 1.20970 0.93101 0.97769 0.97381 1.20846 0.94140 1.02032 0.99069 1.17865 0.82060 0.97561 0.96174 1.43187 1.04767 1.69922 1.11644 1.20592 0.89310 0.77219 0.83696 1.90793 1.69862 1.43920 1.32350 1.19710 0.87116 0.79947 0.85139 1.90785 1.69298 1.47454 1.32439 1.46079 1.09470 1.67750 1.10229 1.21890 0.75989 1.02324 0.99599 1.20951 1.00371 0.95353 0.90712 1.21797 0.97328 0.98407 1.01207 1.21793 0.97945 0.96115 1.02887 1.19094 0.85829 0.97520 0.97617 1.21174 0.91729 1.47966 0.94208 0.92186 1.25005 0.97165 0.95457 0.96817 1.69959 1.02406 1.49331 1.31652 0.86637 0.78394 0.78142 0.85068 1.20760 1.21333 1.19929 1.21113 0.93904 1.00047 0.98936 1.21087 0.93300 0.97548 0.97153 0.75965 0.85008 0.84706 0.73645 0.75044 0.90929 0.90918 0.95063 0.91161 0.93230 0.93226 0.91178 0.95052 0.96239 0.96224 0.93013 0.84053 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 19.25 29.55 0.57 -0.69 16 2 C -0.14 -1.29 13.23 -38.84 -0.51 -1.80 16 3 C -0.01 -0.10 5.73 -106.94 -0.61 -0.71 16 4 C -0.07 -0.58 9.74 -39.23 -0.38 -0.96 16 5 C -0.14 -1.10 9.94 -39.43 -0.39 -1.49 16 6 C 0.16 1.53 6.27 -83.71 -0.53 1.01 16 7 N -0.65 -6.41 5.31 -10.27 -0.05 -6.47 16 8 C 0.51 6.26 7.62 -11.64 -0.09 6.17 16 9 O -0.50 -6.85 14.16 5.47 0.08 -6.78 16 10 C 0.50 6.98 7.89 -11.64 -0.09 6.89 16 11 O -0.52 -8.27 16.48 5.49 0.09 -8.18 16 12 N -0.68 -9.68 4.95 -60.77 -0.30 -9.98 16 13 C 0.12 2.04 4.56 -4.04 -0.02 2.02 16 14 C -0.07 -1.34 0.54 -154.51 -0.08 -1.43 16 15 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 16 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 17 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 18 C -0.51 -13.32 7.65 -34.44 -0.26 -13.58 16 19 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 22 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 C -0.12 -1.23 8.63 -39.44 -0.34 -1.57 16 27 C -0.07 -0.67 9.74 -39.23 -0.38 -1.05 16 28 H 0.22 0.67 7.80 -54.09 -0.42 0.25 16 29 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.43 3.46 8.29 -40.82 -0.34 3.12 16 32 H 0.41 5.49 5.63 -40.82 -0.23 5.26 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 36 H 0.07 1.31 6.61 -51.93 -0.34 0.96 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 40 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.14 1.55 6.41 -52.49 -0.34 1.21 16 45 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -30.92 383.55 -7.39 -38.31 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.96 Total: 5.43 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.74 Total: -8.86 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.38 Total: -41.63 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.17 Total: -14.95 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.92 -7.39 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339889008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.848 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.78 seconds